Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009017

Physical Location & Seq

Genomic Coordinates Forward (+)

2849738 .. 2852153

Gene Structure 2416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGCTTATGAAAAAGTCCCAAAGGCTAAGTCTTTCTTGGTCACAATGCTGCTGGTTCTTGCTTTGATGGCTCATAAAGGTTCGAGCTTTGGAGTCAACTGGGGCACTATGGCAACGCGCCAGCTCCCACCTGAGAAAGTGGTTCAAATGCTTCAAGAAAATGGGTTTACTAAGCTCAAGCTCTTTGAAGCTGACCATAAGATTTTGGATGCTCTTGTTGGGACTCAAATTGAGGTCATGTTGGCCATACCCAATTTCATGTTGCAGGATATGAGTATTGACACTGTTGCTGCAATTTCTTGGGTTGATGCCAATGTCAGCAGTTATTGCTATGATGGTGGAGTCAATATCAAGTATGTTGCAGTAGGCAATGAGCCCTTTCTTAAAGCATACAATGGCACCTATTTAAAGACTACATTACCAGCCCTGAAGAACATCCAGGAAGCTCTCAACCGCTTCGGGCTTGGTTCACAGGTCAAAGTCACTGTGCCCTTCAATGCTGACATCTACTTCTCCCCTGACTCAGACCCAGTTCCATCCACAGGCGACTTTCTGCCTGAACTTAAGGACCATGTGATTGAGATAATCCAATACCTATACACCAATGAAGCACCATTCACAGTCAACATCTACCCTTTTCTCAGCCTGTATGGAAATGCCTACTTCCCTTTTGAATTTGCTTTCTTTGATGGAAAAAGCAAGCCCATTAGAGATGGTGACCTGCTCTATACCAATGTGTTTGATGCAAACTTTGACACCCTTGTTTGGTCTCTAACCAAAGCTGGGTTCCCTGAGATAAAGATCATAGTTGGAGAGGTGGGTTGGCCAACTGATGGGGTTGTAAATGCCAATATCCCAAATGCCAAAAGGTTTAATCAGGGAATGCTTAAACATGCTCTGAGTGGGAATGGAACTCCAGCTAGGAAAGGCATGATTGATGTCTATCTTTTCAGCCTCATTGATGAAAATGCTAAAAGCATTGCTCCTGGCTGCTTTGAGAGGCATTGGGGGCTGTTCGAGTTTGATGGGAAGCCGAAATACGAATTGGATTTGTCGGGTTCACTGCAGAATAAGGGACTTGTAGCTGTGGAAGGTGTGGATTATATGTCCAAAAGGTGGTGTGTGCTGAATCCAGATGCTAAAGATTTGTATGGTTTGGCAAGTAGCATTGACTATGCTTGTAGCCTTTCAGATTGTACTGCCTTGGGTTATGGTTCTTCTTGCAATAATCTTAGCCTGGAAGGGAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTGGTTTGGCGGTGGAGACCGATGAAGATCCATCAGTCGGAAATTGCCAATTCCCAGTGATGATAGCTTATGCTCCTTCACTGTTGCAGCATAGGGGACTTCTACACATGCTGGTAGAAGTTATTGGAGGGTGTATGCTGTATTGGATTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

490

Amino Acids

54.18

Weight (kDa)

4.9

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	31 - 350	2.1e-59	Glycosyl hydrolases family 17
X8	PF07983	373 - 441	1.4e-15	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24330
fragaria_vesca	FvH4_1g05390
malus_domestica	MD15G1190100.v1.1
prunus_persica	Prupe.7G227000_v2.0.a1
pyrus_communis	pycom02g04350 pycom15g17040
rosa_chinensis	RchiOBHm_Chr2g0091081
rosa_laevigata	RLG00000016175 RLG00000016182
rosa_multiflora	Rmu_sc0005171.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150520 Rroxscaffold_2G00150610
rosa_rugosa	Rorug02G0012400 Rorug02G0013200
rosa_samantha	Rh2AG058500 Rh2BG057000 Rh2BG058000 Rh2CG059100 Rh2CG059800 Rh2DG058500 Rh2DG058800
rosa_wichuraiana	Rw2G005070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	398
AccB7I	CCANNNNNTGG	2 cut(s)	833, 1116
AccII	CGCG	1 cut(s)	118
AciI	CCGC	2 cut(s)	454, 1322
AclWI	GGATC	1 cut(s)	1334
AcoI	YGGCCR	2 cut(s)	243, 824
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	1198
AfiI	CCNNNNNNNGG	6 cut(s)	542, 765, 783, 833, 1116, 1349
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	1266
AgsI	TTSAA	5 cut(s)	146, 155, 188, 496, 674
AjnI	CCWGG	3 cut(s)	438, 985, 1236
AjuI	GAANNNNNNNTTGG	4 cut(s)	770, 802, 1028, 1060
Alw26I	GTCTC	2 cut(s)	774, 1322
AlwI	GGATC	1 cut(s)	1334
AoxI	GGCC	2 cut(s)	243, 824
ApeKI	GCWGC	4 cut(s)	49, 290, 990, 1399
ApoI	RAATTY	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	568, 1299
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	2 cut(s)	568, 1299
BaeGI	GKGCMC	2 cut(s)	107, 492
BalI	TGGCCA	2 cut(s)	245, 826
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	1022, 1054
BbvI	GCAGC	4 cut(s)	36, 277, 977, 1411
BccI	CCATC	8 cut(s)	61, 329, 544, 683, 707, 827, 1019, 1351
BciT130I	CCWGG	3 cut(s)	440, 987, 1238
BcoDI	GTCTC	2 cut(s)	774, 1322
BfaI	CTAG	1 cut(s)	921
BfmI	CTRYAG	2 cut(s)	1064, 1466
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	729
BisI	GCNGC	4 cut(s)	50, 291, 991, 1400
BlsI	GCNGC	4 cut(s)	51, 292, 992, 1401
Bme1390I	CCNGG	3 cut(s)	440, 987, 1238
Bme18I	GGWCC	2 cut(s)	568, 1299
BmgT120I	GGNCC	2 cut(s)	568, 1299
BmiI	GGNNCC	2 cut(s)	400, 788
BmrFI	CCNGG	3 cut(s)	440, 987, 1238
BmrI	ACTGGG	3 cut(s)	109, 524, 1361
BmsI	GCATC	4 cut(s)	199, 298, 733, 1126
BmuI	ACTGGG	3 cut(s)	109, 524, 1361
BpmI	CTGGAG	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	3 cut(s)	800, 942, 1338
BsaI	GGTCTC	2 cut(s)	774, 1322
BsaJI	CCNNGG	1 cut(s)	1203
Bsc4I	CCNNNNNNNGG	6 cut(s)	542, 765, 783, 833, 1116, 1349
Bse1I	ACTGG	3 cut(s)	104, 530, 1367
Bse3DI	GCAATG	2 cut(s)	376, 978
Bse8I	GATNNNNATC	3 cut(s)	800, 942, 1338
BseBI	CCWGG	3 cut(s)	440, 987, 1238
BseDI	CCNNGG	1 cut(s)	1203
BseGI	GGATG	3 cut(s)	214, 435, 536
BseJI	GATNNNNATC	3 cut(s)	800, 942, 1338
BseLI	CCNNNNNNNGG	6 cut(s)	542, 765, 783, 833, 1116, 1349
BseMI	GCAATG	2 cut(s)	376, 978
BseMII	CTCAG	5 cut(s)	123, 537, 655, 783, 890
BseNI	ACTGG	3 cut(s)	104, 530, 1367
BseSI	GKGCMC	2 cut(s)	107, 492
BseXI	GCAGC	4 cut(s)	36, 277, 977, 1411
BseYI	CCCAGC	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	245, 826
BshNI	GGYRCC	1 cut(s)	398
BslFI	GGGAC	4 cut(s)	2, 235, 1089, 1422
BslI	CCNNNNNNNGG	6 cut(s)	542, 765, 783, 833, 1116, 1349
BsmAI	GTCTC	2 cut(s)	774, 1322
BsmFI	GGGAC	4 cut(s)	2, 235, 1089, 1422
BsmI	GAATGC	2 cut(s)	888, 1252
BsnI	GGCC	2 cut(s)	245, 826
Bso31I	GGTCTC	2 cut(s)	774, 1322
Bsp1286I	GDGCHC	3 cut(s)	107, 378, 492
Bsp143I	GATC	2 cut(s)	801, 1339
BspACI	CCGC	2 cut(s)	454, 1322
BspANI	GGCC	2 cut(s)	245, 826
BspCNI	CTCAG	5 cut(s)	124, 536, 654, 784, 891
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	400, 788
BspMAI	CTGCAG	1 cut(s)	1068
BspMI	ACCTGC	1 cut(s)	729
BspPI	GGATC	1 cut(s)	1334
BspT107I	GGYRCC	1 cut(s)	398
BspTI	CTTAAG	1 cut(s)	563
BspTNI	GGTCTC	2 cut(s)	774, 1322
BsrDI	GCAATG	2 cut(s)	376, 978
BsrI	ACTGG	3 cut(s)	104, 530, 1367
BssECI	CCNNGG	1 cut(s)	1203
BssMI	GATC	2 cut(s)	801, 1339
BssT1I	CCWWGG	1 cut(s)	1203
Bst2UI	CCWGG	3 cut(s)	440, 987, 1238
Bst4CI	ACNGT	4 cut(s)	286, 487, 622, 1395
BstAFI	CTTAAG	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	122, 701
BstDEI	CTNAG	8 cut(s)	27, 132, 171, 523, 641, 792, 899, 1232
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	214, 435, 536
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	804, 1342
BstMAI	GTCTC	2 cut(s)	774, 1322
BstMBI	GATC	2 cut(s)	801, 1339
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 327, 1009, 1256
BstNI	CCWGG	3 cut(s)	440, 987, 1238
BstNSI	RCATGY	3 cut(s)	896, 1270, 1423
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	3 cut(s)	438, 985, 1236
BstSFI	CTRYAG	2 cut(s)	1064, 1466
BstSLI	GKGCMC	2 cut(s)	107, 492
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	4 cut(s)	36, 277, 977, 1411
BstX2I	RGATCY	1 cut(s)	1339
BstYI	RGATCY	1 cut(s)	1339
BsuRI	GGCC	2 cut(s)	245, 826
BtsCI	GGATG	3 cut(s)	214, 435, 536
BtsI	GCAGTG	1 cut(s)	1061
BtsIMutI	CAGTG	5 cut(s)	282, 483, 1061, 1374, 1391
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	2 cut(s)	122, 701
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	568, 1299
Csp6I	GTAC	1 cut(s)	1197
CviAII	CATG	7 cut(s)	238, 259, 572, 893, 931, 1267, 1420
CviQI	GTAC	1 cut(s)	1197
DdeI	CTNAG	8 cut(s)	27, 132, 171, 523, 641, 792, 899, 1232
DpnI	GATC	2 cut(s)	803, 1341
DpnII	GATC	2 cut(s)	801, 1339
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	2 cut(s)	243, 824
Eco130I	CCWWGG	1 cut(s)	1203
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	2 cut(s)	774, 1322
Eco47I	GGWCC	2 cut(s)	568, 1299
Eco57I	CTGAAG	1 cut(s)	449
Eco91I	GGTNACC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	716
EcoRII	CCWGG	3 cut(s)	438, 985, 1236
EcoT14I	CCWWGG	1 cut(s)	1203
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	1203
FaeI	CATG	7 cut(s)	241, 262, 575, 896, 934, 1270, 1423
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	4 cut(s)	2, 235, 1089, 1422
FatI	CATG	7 cut(s)	237, 258, 571, 892, 930, 1266, 1419
Fnu4HI	GCNGC	4 cut(s)	50, 291, 991, 1400
FokI	GGATG	3 cut(s)	221, 422, 523
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	4 cut(s)	50, 291, 991, 1400
FspBI	CTAG	1 cut(s)	921
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	4 cut(s)	50, 291, 991, 1400
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	245, 826
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	7 cut(s)	241, 262, 575, 896, 934, 1270, 1423
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	97, 625
HindII	GTYRAC	2 cut(s)	97, 625
HinfI	GANTC	6 cut(s)	93, 223, 342, 521, 1129, 1459
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	5 cut(s)	97, 168, 470, 625, 1061
Hpy188I	TCNGA	4 cut(s)	526, 900, 1192, 1352
Hpy188III	TCNNGA	2 cut(s)	155, 1133
Hpy8I	GTNNAC	5 cut(s)	97, 168, 470, 625, 1061
HpyAV	CCTTC	4 cut(s)	502, 1085, 1235, 1398
HpyCH4III	ACNGT	4 cut(s)	286, 487, 622, 1395
HpyCH4V	TGCA	7 cut(s)	265, 293, 362, 746, 1066, 1224, 1399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 327, 1009, 1256
HpyF3I	CTNAG	8 cut(s)	27, 132, 171, 523, 641, 792, 899, 1232
Hsp92II	CATG	7 cut(s)	241, 262, 575, 896, 934, 1270, 1423
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	801, 1339
LmnI	GCTCC	3 cut(s)	129, 988, 1390
Lsp1109I	GCAGC	4 cut(s)	36, 277, 977, 1411
LweI	GCATC	4 cut(s)	199, 298, 733, 1126
MaeI	CTAG	1 cut(s)	921
MaeIII	GTNAC	4 cut(s)	40, 481, 716, 1304
MalI	GATC	2 cut(s)	803, 1341
MboI	GATC	2 cut(s)	801, 1339
MboII	GAAGA	3 cut(s)	442, 1209, 1349
MflI	RGATCY	1 cut(s)	1339
MhlI	GDGCHC	3 cut(s)	107, 378, 492
MlsI	TGGCCA	2 cut(s)	245, 826
MluCI	AATT	7 cut(s)	228, 253, 294, 674, 1043, 1354, 1361
MluNI	TGGCCA	2 cut(s)	245, 826
MlyI	GAGTC	4 cut(s)	102, 217, 351, 515
MmeI	TCCRAC	2 cut(s)	790, 1330
MnlI	CCTC	5 cut(s)	226, 808, 965, 993, 1433
Mox20I	TGGCCA	2 cut(s)	245, 826
MscI	TGGCCA	2 cut(s)	245, 826
MseI	TTAA	6 cut(s)	384, 407, 564, 873, 888, 1263
Msp20I	TGGCCA	2 cut(s)	245, 826
MspCI	CTTAAG	1 cut(s)	563
MspR9I	CCNGG	3 cut(s)	440, 987, 1238
Mva1269I	GAATGC	2 cut(s)	888, 1252
MvaI	CCWGG	3 cut(s)	440, 987, 1238
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	68, 327, 1009, 1256
NdeII	GATC	2 cut(s)	801, 1339
NlaIII	CATG	7 cut(s)	241, 262, 575, 896, 934, 1270, 1423
NlaIV	GGNNCC	2 cut(s)	400, 788
NmuCI	GTSAC	4 cut(s)	40, 481, 716, 1304
NspI	RCATGY	3 cut(s)	896, 1270, 1423
PciI	ACATGT	1 cut(s)	1266
PctI	GAATGC	2 cut(s)	888, 1252
PfeI	GAWTC	2 cut(s)	1129, 1459
PflMI	CCANNNNNTGG	2 cut(s)	833, 1116
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	51, 292, 992, 1401
PleI	GAGTC	4 cut(s)	101, 217, 350, 515
PpsI	GAGTC	4 cut(s)	101, 217, 350, 515
PscI	ACATGT	1 cut(s)	1266
Psp6I	CCWGG	3 cut(s)	438, 985, 1236
PspEI	GGTNACC	1 cut(s)	716
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	3 cut(s)	438, 985, 1236
PspN4I	GGNNCC	2 cut(s)	400, 788
PspPI	GGNCC	2 cut(s)	568, 1299
PstI	CTGCAG	1 cut(s)	1068
PsuI	RGATCY	1 cut(s)	1339
RsaI	GTAC	1 cut(s)	1198
RsaNI	GTAC	1 cut(s)	1197
SaqAI	TTAA	6 cut(s)	384, 407, 564, 873, 888, 1263
SatI	GCNGC	4 cut(s)	50, 291, 991, 1400
Sau3AI	GATC	2 cut(s)	801, 1339
Sau96I	GGNCC	2 cut(s)	568, 1299
SchI	GAGTC	4 cut(s)	102, 217, 351, 515
ScrFI	CCNGG	3 cut(s)	440, 987, 1238
SduI	GDGCHC	3 cut(s)	107, 378, 492
SfaNI	GCATC	4 cut(s)	199, 298, 733, 1126
SfcI	CTRYAG	2 cut(s)	1064, 1466
SinI	GGWCC	2 cut(s)	568, 1299
SmlI	CTYRAG	2 cut(s)	176, 563
SmoI	CTYRAG	2 cut(s)	176, 563
Sse9I	AATT	7 cut(s)	228, 253, 294, 674, 1043, 1354, 1361
SsiI	CCGC	2 cut(s)	454, 1322
SspMI	CTAG	1 cut(s)	921
StyD4I	CCNGG	3 cut(s)	438, 985, 1236
StyI	CCWWGG	1 cut(s)	1203
TaaI	ACNGT	4 cut(s)	286, 487, 622, 1395
TaqI	TCGA	2 cut(s)	83, 1017
TaqII	GACCGA	1 cut(s)	1346
TasI	AATT	7 cut(s)	228, 253, 294, 674, 1043, 1354, 1361
TatI	WGTACW	1 cut(s)	1196
TfiI	GAWTC	2 cut(s)	1129, 1459
Tru1I	TTAA	6 cut(s)	384, 407, 564, 873, 888, 1263
Tru9I	TTAA	6 cut(s)	384, 407, 564, 873, 888, 1263
TscAI	CASTG	5 cut(s)	289, 490, 1068, 1374, 1398
TseFI	GTSAC	4 cut(s)	40, 481, 716, 1304
TseI	GCWGC	4 cut(s)	49, 290, 990, 1399
Tsp45I	GTSAC	4 cut(s)	40, 481, 716, 1304
TspDTI	ATGAA	5 cut(s)	24, 247, 621, 978, 1350
TspRI	CASTG	5 cut(s)	289, 490, 1068, 1374, 1398
Van91I	CCANNNNNTGG	2 cut(s)	833, 1116
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	568, 1299
XapI	RAATTY	1 cut(s)	674
XceI	RCATGY	3 cut(s)	896, 1270, 1423
XspI	CTAG	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.