Rh2DG058800

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009017
Physical Location & Seq
Forward (+)
4310237 .. 4310680
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG058800.1

Sequence Viewer

Length: 444 bp
ATGACTAATTATTTTAAAATTTTCAATAAATTTTCAGTGCAGAATAAGGGACTTGTAGCTGTGGAAGGTGTGGATTATATGTCCAAAAGGTGGTGTGTGCTGAATCCAGATGCTAAAGATTTGTATGGTTTGCCAAGTAGCATTGACTATGCTTGTAGCCTTTCAGATTGTACTGCCTTGGGTTATGGTTCTTCTTGCAATAACCTTAGCCTGGAAAGAAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTTGTTTGGCGATGGAAACTGATAAAGATCCATCAGTAGGGGATTGCCAATTCCCAGTGATGGTAGCTTATGCTCCTTCACTGTTGCAGAAGGAGGGTGATGAAAATATGGTGATGAAAATTATTGGAGGGTGTATGTTGTATTGGATTCTGCTATAG

Protein Analysis

147

Amino Acids

16.55

Weight (kDa)

4.54

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 31 - 99 7.8e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 2 cut(s) 18, 29
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 4 cut(s) 90, 211, 323, 346
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 59, 353
AluI AGCT 2 cut(s) 59, 353
AlwI GGATC 1 cut(s) 308
ApoI RAATTY 2 cut(s) 18, 29
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 395, 409
AvaII GGWCC 1 cut(s) 273
BccI CCATC 3 cut(s) 292, 325, 340
BciT130I CCWGG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 211, 323, 346
Bse1I ACTGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 4 cut(s) 90, 211, 323, 346
BseNI ACTGG 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 4 cut(s) 90, 211, 323, 346
BsmFI GGGAC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 313
BspPI GGATC 1 cut(s) 308
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 206
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 311
BtsIMutI CAGTG 3 cut(s) 42, 348, 365
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 241
CviJI RGCY 4 cut(s) 59, 159, 210, 353
CviKI_1 RGCY 4 cut(s) 59, 159, 210, 353
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraI TTTAAA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 244
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 240
Hin1II CATG 1 cut(s) 244
HinfI GANTC 2 cut(s) 103, 433
HphI GGTGA 2 cut(s) 395, 409
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 3 cut(s) 59, 370, 372
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 40, 198, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 1 cut(s) 244
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 6 cut(s) 120, 197, 224, 275, 289, 354
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 313
MluCI AATT 5 cut(s) 7, 18, 29, 335, 405
MnlI CCTC 2 cut(s) 373, 407
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 2 cut(s) 15, 237
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 313
NlaIII CATG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 244
PciI ACATGT 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 103, 433
PflMI CCANNNNNTGG 1 cut(s) 90
PscI ACATGT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 15, 237
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 212
SetI ASST 6 cut(s) 61, 70, 92, 207, 278, 355
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 273
Sse9I AATT 5 cut(s) 7, 18, 29, 335, 405
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 369
TasI AATT 5 cut(s) 7, 18, 29, 335, 405
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 2 cut(s) 103, 433
Tru1I TTAA 2 cut(s) 15, 237
Tru9I TTAA 2 cut(s) 15, 237
TscAI CASTG 3 cut(s) 42, 348, 372
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 402, 416
TspRI CASTG 3 cut(s) 42, 348, 372
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 2 cut(s) 18, 29
XceI RCATGY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.