Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009017

Physical Location & Seq

Genomic Coordinates Reverse (-)

87877039 .. 87878340

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCAAAGCCACTGCTCCCTTCAATGCTGGCATCTGCTTCTTCCCTGACGCAGATCCAGTTCCATCCACATGTGATTGACACAGTCCAATACCTATATACCAATGAAGCTCCATTCACCGTCAACATTTACCTTTTTCTTAGCCTGTATGAAAATGCGTATTTCCCTTTTGAATTTGCTTTCTTTGATGGAACAAGCAAGCCCAGTAGAAACGGTGACCTGCTCTACACCAATGTGTTCGATGCAAACTTTGACACCCTAGTTTGGTCTCTAACCAAAGCTGGGTTCCCTGAAATGAAGATCATAGTTGGAGAGGTGGGTTGGCCGACTGATGGAGTTGTAAATTCCAATACCCCAAATGCCAAAAGATTTAATCAGGATATGCTTAAACATGCCTTAAGTGGAAATGGAACTCCAGCTAGGAAAGGCATGATTGATGTCTATCTTTTTAGCCTCATTGATGAAAATACCAAAAGCATTGCTCCTGGCTGCTTTGAGAGGCAATGGGGGCTGTTCGAGTTTGATGGGAAGCCGAAATACGAATTGGATTTGTCGGGTTCAGTGCAGAATAAGAGACTTGTAGCTGTGGAAGGTGTGGATTATATGTCCACAAGGTGGTGTGTGCTGAATCCAGATGCTAAAGATTTGTATGGTTTGCCAAGTAGCATTGACTATGCTTGTAGCCTTTCAGATTGTACTGCCTTGGGTTATGGTTCTTCTTGCAATAACCTTAGCCTGGAAAGAAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTTGTTTGGCGATGGAAACCGATAAAGATCCATCAGTAGGGGATTGCCAATTCTCAGTGATGATAGCTTATGCTCCTTCACTGTTGCAGAAGGAGGGTGATGAAAATTATTGGAGGGTGTATGTTGTATTGGATTCTGCTATAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

319

Amino Acids

35.77

Weight (kDa)

4.59

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	17 - 183	8.6e-31	Glycosyl hydrolases family 17
X8	PF07983	206 - 274	3.8e-14	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24330
fragaria_vesca	FvH4_1g05390
malus_domestica	MD15G1190100.v1.1
prunus_persica	Prupe.7G227000_v2.0.a1
pyrus_communis	pycom02g04350 pycom15g17040
rosa_chinensis	RchiOBHm_Chr2g0091081
rosa_laevigata	RLG00000016175 RLG00000016182
rosa_multiflora	Rmu_sc0005171.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150520 Rroxscaffold_2G00150610
rosa_rugosa	Rorug02G0012400 Rorug02G0013200
rosa_samantha	Rh2AG058500 Rh2BG057000 Rh2BG058000 Rh2CG059100 Rh2CG059800 Rh2DG058500 Rh2DG058800
rosa_wichuraiana	Rw2G005070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	615
AclWI	GGATC	2 cut(s)	49, 833
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	173, 343
AdeI	CACNNNGTG	1 cut(s)	615
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	2 cut(s)	70, 765
AgsI	TTSAA	2 cut(s)	24, 173
AjnI	CCWGG	2 cut(s)	484, 735
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 527, 559
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	5 cut(s)	110, 281, 419, 584, 878
AluI	AGCT	5 cut(s)	110, 281, 419, 584, 878
Alw26I	GTCTC	2 cut(s)	273, 568
AlwI	GGATC	2 cut(s)	49, 833
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	489
ApoI	RAATTY	2 cut(s)	173, 343
Asp700I	GAANNNNTTC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	798
AsuHPI	GGTGA	3 cut(s)	109, 227, 920
AvaII	GGWCC	1 cut(s)	798
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	6 cut(s)	72, 182, 326, 518, 817, 850
BciT130I	CCWGG	2 cut(s)	486, 737
BcoDI	GTCTC	2 cut(s)	273, 568
BfaI	CTAG	2 cut(s)	260, 420
BfmI	CTRYAG	1 cut(s)	951
BfrI	CTTAAG	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	1 cut(s)	490
BlsI	GCNGC	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	486, 737
Bme18I	GGWCC	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	798
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	486, 737
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	41, 232, 625
BmuI	ACTGGG	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	731
BsaBI	GATNNNNATC	2 cut(s)	441, 837
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
Bse1I	ACTGG	2 cut(s)	58, 204
Bse3DI	GCAATG	2 cut(s)	477, 509
Bse8I	GATNNNNATC	2 cut(s)	441, 837
BseBI	CCWGG	2 cut(s)	486, 737
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	1 cut(s)	64
BseJI	GATNNNNATC	2 cut(s)	441, 837
BseLI	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
BseMI	GCAATG	2 cut(s)	477, 509
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	2 cut(s)	58, 204
BseXI	GCAGC	1 cut(s)	476
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	584
BshFI	GGCC	1 cut(s)	325
BslI	CCNNNNNNNGG	6 cut(s)	264, 282, 332, 615, 736, 848
BsmAI	GTCTC	2 cut(s)	273, 568
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	54, 300, 838
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	878
BspLI	GGNNCC	1 cut(s)	287
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	49, 833
BspTI	CTTAAG	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	2 cut(s)	477, 509
BsrI	ACTGG	2 cut(s)	58, 204
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	3 cut(s)	54, 300, 838
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	486, 737
Bst4CI	ACNGT	4 cut(s)	85, 121, 215, 894
BstAFI	CTTAAG	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	30, 200
BstDEI	CTNAG	3 cut(s)	140, 731, 865
BstEII	GGTNACC	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	57, 303, 841
BstMAI	GTCTC	2 cut(s)	273, 568
BstMBI	GATC	3 cut(s)	54, 300, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 755
BstNI	CCWGG	2 cut(s)	486, 737
BstNSI	RCATGY	3 cut(s)	74, 395, 769
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	484, 735
BstSFI	CTRYAG	1 cut(s)	951
BstV1I	GCAGC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	54, 838
BstYI	RGATCY	2 cut(s)	54, 838
BsuRI	GGCC	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	836
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	4 cut(s)	11, 567, 873, 890
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	30, 200
Cfr13I	GGNCC	1 cut(s)	798
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	4 cut(s)	71, 392, 430, 766
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	3 cut(s)	140, 731, 865
DpnI	GATC	3 cut(s)	56, 302, 840
DpnII	GATC	3 cut(s)	54, 300, 838
DraIII	CACNNNGTG	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	798
Eco91I	GGTNACC	1 cut(s)	215
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	484, 735
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	4 cut(s)	74, 395, 433, 769
FalI	AAGNNNNNCTT	2 cut(s)	733, 765
FatI	CATG	4 cut(s)	70, 391, 429, 765
Fnu4HI	GCNGC	1 cut(s)	490
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	2 cut(s)	260, 420
GluI	GCNGC	1 cut(s)	490
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	325
HgaI	GACGC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	74, 395, 433, 769
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	628, 944
HphI	GGTGA	3 cut(s)	109, 227, 920
Hpy166II	GTNNAC	2 cut(s)	124, 609
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	2 cut(s)	377, 632
Hpy8I	GTNNAC	2 cut(s)	124, 609
HpyAV	CCTTC	4 cut(s)	30, 584, 895, 897
HpyCH4III	ACNGT	4 cut(s)	85, 121, 215, 894
HpyCH4V	TGCA	4 cut(s)	245, 565, 723, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 755
HpyF3I	CTNAG	3 cut(s)	140, 731, 865
Hsp92II	CATG	4 cut(s)	74, 395, 433, 769
Kzo9I	GATC	3 cut(s)	54, 300, 838
LmnI	GCTCC	4 cut(s)	21, 115, 487, 889
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	3 cut(s)	41, 232, 625
MaeI	CTAG	2 cut(s)	260, 420
MaeIII	GTNAC	2 cut(s)	215, 803
MalI	GATC	3 cut(s)	56, 302, 840
MboI	GATC	3 cut(s)	54, 300, 838
MboII	GAAGA	3 cut(s)	33, 310, 708
MflI	RGATCY	2 cut(s)	54, 838
MluCI	AATT	5 cut(s)	173, 343, 542, 860, 916
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	307, 464, 492, 898, 918
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	4 cut(s)	372, 387, 398, 762
MslI	CAYNNNNRTG	2 cut(s)	69, 233
MspCI	CTTAAG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	486, 737
MvaI	CCWGG	2 cut(s)	486, 737
MwoI	GCNNNNNNNGC	2 cut(s)	508, 755
NdeII	GATC	3 cut(s)	54, 300, 838
NlaIII	CATG	4 cut(s)	74, 395, 433, 769
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	2 cut(s)	215, 803
NspI	RCATGY	3 cut(s)	74, 395, 769
OliI	CACNNNNGTG	1 cut(s)	233
PciI	ACATGT	2 cut(s)	70, 765
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	628, 944
PflFI	GACNNNGTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	615
PkrI	GCNGC	1 cut(s)	491
PscI	ACATGT	2 cut(s)	70, 765
Psp6I	CCWGG	2 cut(s)	484, 735
PspEI	GGTNACC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	484, 735
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	798
PsuI	RGATCY	2 cut(s)	54, 838
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	2 cut(s)	69, 233
SaqAI	TTAA	4 cut(s)	372, 387, 398, 762
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	3 cut(s)	54, 300, 838
Sau96I	GGNCC	1 cut(s)	798
ScrFI	CCNGG	2 cut(s)	486, 737
SfaNI	GCATC	3 cut(s)	41, 232, 625
SfcI	CTRYAG	1 cut(s)	951
SinI	GGWCC	1 cut(s)	798
SmiMI	CAYNNNNRTG	2 cut(s)	69, 233
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	5 cut(s)	173, 343, 542, 860, 916
SspMI	CTAG	2 cut(s)	260, 420
StyD4I	CCNGG	2 cut(s)	484, 735
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	4 cut(s)	85, 121, 215, 894
TaqI	TCGA	2 cut(s)	240, 516
TasI	AATT	5 cut(s)	173, 343, 542, 860, 916
TatI	WGTACW	1 cut(s)	695
TfiI	GAWTC	2 cut(s)	628, 944
Tru1I	TTAA	4 cut(s)	372, 387, 398, 762
Tru9I	TTAA	4 cut(s)	372, 387, 398, 762
TscAI	CASTG	4 cut(s)	18, 567, 873, 897
TseFI	GTSAC	2 cut(s)	215, 803
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	2 cut(s)	215, 803
TspDTI	ATGAA	5 cut(s)	120, 165, 311, 477, 927
TspRI	CASTG	4 cut(s)	18, 567, 873, 897
Tth111I	GACNNNGTC	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	615
Vha464I	CTTAAG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	798
XapI	RAATTY	2 cut(s)	173, 343
XceI	RCATGY	3 cut(s)	74, 395, 769
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	2 cut(s)	260, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.