Rh2CG059100

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009017
Physical Location & Seq
Forward (+)
4781616 .. 4785022
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG059100.1

Sequence Viewer

Length: 1119 bp
ATGAGAATGGTGCATGAAAAAGTCCCAAAGGCCAAGTCTTTCTTGGTCACAATGCTGCTGGTTCTTGTTTTCATGGCCCATAAAGGTTGGAGCTTTGGAGTCAACTGGGGGACTATGGCAACGCACCAGCTCCCACCTGAGAAAGTGGTTCAAATGCTTGAAGATAATGGGTTTACTAAGCTCAAGCTGTTTGAAGCTGATCAGAAAATTTTAGAGGCTCTTACTGGGACTAAAATTGAGGTCATGTTGGCCATACCCAATTTCATGTTGCAGGAGATGAGTATAGACCCTGTTGCTGCATTTTCTTGGGTCGATGCCAATGTCACCTCTTATTGCTATGATGGTGGAGTCAATATCAAGTATGTCGCAGTAGGCAATGAACCCTTTCTCAAAGCATACAATGGCACCTATTTAAAGACTACATTACCAGCCCTGAAGAACATCCAGGAAGCTCTCAACCGCGCTGGGCTTGGCTCACAGGTCAAAGCCACAGTGCCCTTCAATGCTGACATCTACTTCTCCCCTGACTCAAACCCAGTTCCATCCACAGGCGACTTTCGGCCTGAACTTAAAGACAATGTGATTGAGATAGTCCAATACCTATATACCAATGAGGCTCCATTCACAGTCAACATCTACCCTTTTCTGAGCCTCTATGGAAATGCCTATTTCCCTTTCGAATTTGCTTTCTTTGATGGAACAAGCAAGCCCATTAGAGATGGTGACCTGCTCTACACCAATGTGTTTGATGCAAACTTGGACACCCTTGTTTGGTCTCTAACCAAAGCTGGGTTCCCTGAAATGAAGATCATAGTCGGAGAGGTGGGTTGGCCAACTGATGGAGTTGTAAATGCCAATATCCCAAATGCCAAAAGATTTAATCAGGGAATGCTTAAACATGCTTTGAGTGGAAATGGAACTCCAGCTAGGAAGGGCATGATTGATGTCTATCTTTTTAGCCTCATCGATGAAAATGCCAAAAGCATTGCTCCCGGCTGCTTTGAGAGGCATTGGGGGCTGTTCGAGTTTGATGGGAAGCCGAAGTACGAATTGGATTTGTCGGGTTCAGTGCAGAATAAGGGACTTGTAGCTGTGGAAGGTATGAGTAGAAGAAAATAA

Protein Analysis

372

Amino Acids

41.42

Weight (kDa)

5.83

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 33 - 352 1.4e-61 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 839
AccII CGCG 1 cut(s) 462
AciI CCGC 1 cut(s) 460
AcoI YGGCCR 2 cut(s) 249, 830
AcsI RAATTY 2 cut(s) 207, 680
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 1 cut(s) 1046
AfiI CCNNNNNNNGG 4 cut(s) 548, 771, 789, 839
AgsI TTSAA 4 cut(s) 152, 161, 194, 502
AjnI CCWGG 1 cut(s) 444
AjuI GAANNNNNNNTTGG 4 cut(s) 776, 808, 1034, 1066
AleI CACNNNNGTG 1 cut(s) 740
AluBI AGCT 9 cut(s) 93, 130, 181, 187, 197, 452, 788, 926, 1091
AluI AGCT 9 cut(s) 93, 130, 181, 187, 197, 452, 788, 926, 1091
Alw26I GTCTC 1 cut(s) 780
AoxI GGCC 5 cut(s) 30, 75, 249, 560, 830
ApeKI GCWGC 3 cut(s) 55, 296, 996
ApoI RAATTY 2 cut(s) 207, 680
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 993
AsuHPI GGTGA 2 cut(s) 316, 734
AsuII TTCGAA 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 498
BalI TGGCCA 2 cut(s) 251, 832
BanI GGYRCC 1 cut(s) 404
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BbvI GCAGC 3 cut(s) 42, 283, 983
BccI CCATC 6 cut(s) 335, 550, 689, 713, 833, 1025
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 1 cut(s) 446
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 993
BcoDI GTCTC 1 cut(s) 780
BfaI CTAG 1 cut(s) 927
BfuAI ACCTGC 1 cut(s) 735
BisI GCNGC 3 cut(s) 56, 297, 997
BlsI GCNGC 3 cut(s) 57, 298, 998
Bme1390I CCNGG 2 cut(s) 446, 993
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 3 cut(s) 406, 618, 794
BmrFI CCNGG 2 cut(s) 446, 993
BmrI ACTGGG 3 cut(s) 115, 234, 530
BmsI GCATC 2 cut(s) 304, 739
BmuI ACTGGG 3 cut(s) 115, 234, 530
BpmI CTGGAG 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 993
Bsa29I ATCGAT 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 948
BsaI GGTCTC 1 cut(s) 780
Bsc4I CCNNNNNNNGG 4 cut(s) 548, 771, 789, 839
Bse1I ACTGG 3 cut(s) 110, 229, 536
Bse3DI GCAATG 2 cut(s) 382, 984
Bse8I GATNNNNATC 1 cut(s) 948
BseBI CCWGG 1 cut(s) 446
BseCI ATCGAT 1 cut(s) 966
BseGI GGATG 2 cut(s) 441, 542
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 4 cut(s) 548, 771, 789, 839
BseMI GCAATG 2 cut(s) 382, 984
BseMII CTCAG 2 cut(s) 129, 638
BseNI ACTGG 3 cut(s) 110, 229, 536
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 3 cut(s) 42, 283, 983
BseYI CCCAGC 2 cut(s) 464, 788
BsgI GTGCAG 1 cut(s) 1091
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 5 cut(s) 32, 77, 251, 562, 832
BshNI GGYRCC 1 cut(s) 404
BshVI ATCGAT 1 cut(s) 966
BsiSI CCGG 1 cut(s) 993
BslFI GGGAC 4 cut(s) 8, 124, 241, 1095
BslI CCNNNNNNNGG 4 cut(s) 548, 771, 789, 839
BsmAI GTCTC 1 cut(s) 780
BsmFI GGGAC 4 cut(s) 8, 124, 241, 1095
BsmI GAATGC 1 cut(s) 894
BsnI GGCC 5 cut(s) 32, 77, 251, 562, 832
Bso31I GGTCTC 1 cut(s) 780
Bsp119I TTCGAA 1 cut(s) 678
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 2 cut(s) 199, 807
BspACI CCGC 1 cut(s) 460
BspANI GGCC 5 cut(s) 32, 77, 251, 562, 832
BspCNI CTCAG 2 cut(s) 130, 639
BspDI ATCGAT 1 cut(s) 966
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 3 cut(s) 406, 618, 794
BspMI ACCTGC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 780
BsrDI GCAATG 2 cut(s) 382, 984
BsrI ACTGG 3 cut(s) 110, 229, 536
BssMI GATC 2 cut(s) 199, 807
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 2 cut(s) 493, 628
BstBI TTCGAA 1 cut(s) 678
BstC8I GCNNGC 1 cut(s) 707
BstDEI CTNAG 3 cut(s) 138, 177, 647
BstEII GGTNACC 1 cut(s) 722
BstF5I GGATG 2 cut(s) 441, 542
BstFNI CGCG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 2 cut(s) 202, 810
BstMAI GTCTC 1 cut(s) 780
BstMBI GATC 2 cut(s) 199, 807
BstMWI GCNNNNNNNGC 1 cut(s) 1015
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 902
BstPI GGTNACC 1 cut(s) 722
BstSCI CCNGG 2 cut(s) 444, 991
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 42, 283, 983
Bsu15I ATCGAT 1 cut(s) 966
BsuRI GGCC 5 cut(s) 32, 77, 251, 562, 832
BsuTUI ATCGAT 1 cut(s) 966
BtsCI GGATG 2 cut(s) 441, 542
BtsIMutI CAGTG 2 cut(s) 498, 1074
BveI ACCTGC 1 cut(s) 735
Cac8I GCNNGC 1 cut(s) 707
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 76
ClaI ATCGAT 1 cut(s) 966
Csp6I GTAC 1 cut(s) 1045
CviAII CATG 6 cut(s) 14, 73, 244, 265, 899, 937
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 3 cut(s) 138, 177, 647
DpnI GATC 2 cut(s) 201, 809
DpnII GATC 2 cut(s) 199, 807
DraI TTTAAA 1 cut(s) 414
EaeI YGGCCR 2 cut(s) 249, 830
Eco31I GGTCTC 1 cut(s) 780
Eco57I CTGAAG 1 cut(s) 455
Eco91I GGTNACC 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 444
FaeI CATG 6 cut(s) 17, 76, 247, 268, 902, 940
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 4 cut(s) 8, 124, 241, 1095
FatI CATG 6 cut(s) 13, 72, 243, 264, 898, 936
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 56, 297, 997
FokI GGATG 2 cut(s) 428, 529
Fsp4HI GCNGC 3 cut(s) 56, 297, 997
FspBI CTAG 1 cut(s) 927
GlaI GCGC 1 cut(s) 463
GluI GCNGC 3 cut(s) 56, 297, 997
GsaI CCCAGC 2 cut(s) 468, 792
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 5 cut(s) 32, 77, 251, 562, 832
HapII CCGG 1 cut(s) 993
HhaI GCGC 1 cut(s) 464
Hin1II CATG 6 cut(s) 17, 76, 247, 268, 902, 940
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 2 cut(s) 103, 631
HindII GTYRAC 2 cut(s) 103, 631
HinfI GANTC 3 cut(s) 99, 348, 527
HpaII CCGG 1 cut(s) 993
HphI GGTGA 2 cut(s) 316, 734
Hpy166II GTNNAC 3 cut(s) 103, 174, 631
Hpy188I TCNGA 3 cut(s) 204, 648, 818
Hpy8I GTNNAC 3 cut(s) 103, 174, 631
HpyAV CCTTC 3 cut(s) 508, 925, 1091
HpyCH4III ACNGT 2 cut(s) 493, 628
HpyCH4V TGCA 5 cut(s) 13, 271, 299, 752, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 1015
HpyF3I CTNAG 3 cut(s) 138, 177, 647
Hsp92II CATG 6 cut(s) 17, 76, 247, 268, 902, 940
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 199, 807
LmnI GCTCC 4 cut(s) 90, 135, 622, 994
Lsp1109I GCAGC 3 cut(s) 42, 283, 983
LweI GCATC 2 cut(s) 304, 739
MaeI CTAG 1 cut(s) 927
MaeIII GTNAC 3 cut(s) 46, 322, 722
MalI GATC 2 cut(s) 201, 809
MboI GATC 2 cut(s) 199, 807
MboII GAAGA 3 cut(s) 173, 448, 817
MhlI GDGCHC 1 cut(s) 498
MlsI TGGCCA 2 cut(s) 251, 832
MluCI AATT 5 cut(s) 207, 234, 259, 680, 1049
MluNI TGGCCA 2 cut(s) 251, 832
MlyI GAGTC 3 cut(s) 108, 357, 521
MmeI TCCRAC 2 cut(s) 68, 796
MnlI CCTC 8 cut(s) 208, 232, 337, 607, 662, 814, 971, 999
Mox20I TGGCCA 2 cut(s) 251, 832
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 2 cut(s) 251, 832
MseI TTAA 4 cut(s) 413, 570, 879, 894
MslI CAYNNNNRTG 1 cut(s) 740
Msp20I TGGCCA 2 cut(s) 251, 832
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 2 cut(s) 446, 993
Mva1269I GAATGC 1 cut(s) 894
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 1015
NciI CCSGG 1 cut(s) 993
NdeII GATC 2 cut(s) 199, 807
NlaIII CATG 6 cut(s) 17, 76, 247, 268, 902, 940
NlaIV GGNNCC 3 cut(s) 406, 618, 794
NmuCI GTSAC 3 cut(s) 46, 322, 722
NspI RCATGY 1 cut(s) 902
NspV TTCGAA 1 cut(s) 678
OliI CACNNNNGTG 1 cut(s) 740
PctI GAATGC 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 3 cut(s) 57, 298, 998
PleI GAGTC 3 cut(s) 107, 356, 521
PpsI GAGTC 3 cut(s) 107, 356, 521
Psp6I CCWGG 1 cut(s) 444
PspEI GGTNACC 1 cut(s) 722
PspFI CCCAGC 2 cut(s) 464, 788
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 3 cut(s) 406, 618, 794
PspPI GGNCC 1 cut(s) 76
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
RseI CAYNNNNRTG 1 cut(s) 740
SaqAI TTAA 4 cut(s) 413, 570, 879, 894
SatI GCNGC 3 cut(s) 56, 297, 997
Sau3AI GATC 2 cut(s) 199, 807
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 3 cut(s) 108, 357, 521
ScrFI CCNGG 2 cut(s) 446, 993
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 2 cut(s) 304, 739
SfuI TTCGAA 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 5 cut(s) 207, 234, 259, 680, 1049
SsiI CCGC 1 cut(s) 460
SspMI CTAG 1 cut(s) 927
StyD4I CCNGG 2 cut(s) 444, 991
TaaI ACNGT 2 cut(s) 493, 628
TaqI TCGA 4 cut(s) 312, 678, 966, 1023
TasI AATT 5 cut(s) 207, 234, 259, 680, 1049
Tru1I TTAA 4 cut(s) 413, 570, 879, 894
Tru9I TTAA 4 cut(s) 413, 570, 879, 894
TscAI CASTG 2 cut(s) 498, 1074
TseFI GTSAC 3 cut(s) 46, 322, 722
TseI GCWGC 3 cut(s) 55, 296, 996
Tsp45I GTSAC 3 cut(s) 46, 322, 722
TspDTI ATGAA 6 cut(s) 30, 61, 253, 393, 818, 984
TspRI CASTG 2 cut(s) 498, 1074
Van91I CCANNNNNTGG 1 cut(s) 839
XapI RAATTY 2 cut(s) 207, 680
XceI RCATGY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.