Rh2CG059800

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009017
Physical Location & Seq
Forward (+)
4870578 .. 4870943
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG059800.1

Sequence Viewer

Length: 366 bp
ATGTCCAAAAGGTGGTGTGTGCTGAATCCAGATGCTAAAGATTTGTATGGTTTGCCAAGTAGCATTGACTATGCTTGTAGCCTTTCAGATTGTACTGCCTTGGGTTATGGTTCTTCTTGCAATAACCTTAGCCTGGAAAGAAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTTGTTTGGCGATGGAAACCGATAAAGATCCATCAGTAGGGGATTGCCAATTCCCAGTGATGGTAGCTTATGCTCCTTCACGGTTGCAGAAGGAGGGTGATGAAAATATGGTGATGAAAATTATTGGAGGGTGTATGTTGTATTGGATTCTGCTATAG

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

4.44

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 5 - 73 4.7e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AclWI GGATC 1 cut(s) 230
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 4 cut(s) 12, 133, 245, 268
AflIII ACRYGT 1 cut(s) 162
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 317, 331
AvaII GGWCC 1 cut(s) 195
BccI CCATC 3 cut(s) 214, 247, 262
BciT130I CCWGG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 133, 245, 268
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 4 cut(s) 12, 133, 245, 268
BseNI ACTGG 1 cut(s) 263
BslI CCNNNNNNNGG 4 cut(s) 12, 133, 245, 268
Bsp143I GATC 1 cut(s) 235
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 93
CviAII CATG 1 cut(s) 163
CviJI RGCY 3 cut(s) 81, 132, 275
CviKI_1 RGCY 3 cut(s) 81, 132, 275
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 166
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 1 cut(s) 162
Hin1II CATG 1 cut(s) 166
HinfI GANTC 2 cut(s) 25, 355
HphI GGTGA 2 cut(s) 317, 331
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 292, 294
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 120, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 42, 119, 146, 197, 211, 276
LweI GCATC 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 1 cut(s) 105
MflI RGATCY 1 cut(s) 235
MluCI AATT 2 cut(s) 257, 327
MnlI CCTC 2 cut(s) 295, 329
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 166
PciI ACATGT 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 25, 355
PflMI CCANNNNNTGG 1 cut(s) 12
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 134
SetI ASST 4 cut(s) 14, 129, 200, 277
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 362
SinI GGWCC 1 cut(s) 195
Sse9I AATT 2 cut(s) 257, 327
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 291
TasI AATT 2 cut(s) 257, 327
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 2 cut(s) 25, 355
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 324, 338
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 195
XceI RCATGY 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.