Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009017

Physical Location & Seq

Genomic Coordinates Forward (+)

4536001 .. 4538572

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGCTTTTGCAGGAAGCTCTCAACCGCGCCTAGCTTGGTTCACATGTCAAAGCCACTGCTCCTTTCAATGCTGACATCTGCTTCTCCCCTGACTCAGATCCAGTTTCATCCACATGTGATTGACATAGTCCAATACCTATATACCAATGAAGCTCCATTTACTGTCAACATCTACCTTTTTCTTAGCCTGTATGAAAATGCCTATTTCCCTTTTGAATTTGCTTTCTTTGATGGAACAAGCAAGCCCAGTAGAAATGGTGACCTGCTCTACACCAATGTGTTCGATGCAAACTTTGACACCCTAGTTTGGTCTCTAACCAAAGTTGGGTTCCCTGAAATGAAGATCATAGTTGGAGAGGGAATGCTTAAACATGCCTTAAGTGGAAATGGAACTCCAACTAGGAAAGGCATGATTGGTGTTTATCTTTTTAGCCTCATTGATGAAAATGCCAAAAGCATTGCTCCTGGCTGCTTTGAGAGGCAATGGGGGCTGTTTGAGTTTGATGGGAAGCCGAAATACGAATTGGATTTGTCTGATGCTAAAGATTTGTATGGTTTGCCAAGTAGCATTGACTATGCTTGTGGCCTTTCAGATTGTACTGCCTTAGGTTATGGTTCTTCTTGCAATAACCTTAGCCAGGAAAGAAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTTGTTTGGCGATGGAAACCGATAAAGATCCATCAGTAGGGGATTGCCAATTCCCAGTGATGATAGCTTATGCTCCTTCACTGTTGCAGAAGGAGGGTGATGAAAATATGGTGATGAAAATTATTAGAGGGTGTATGTTGTATTGGATTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

291

Amino Acids

32.61

Weight (kDa)

4.84

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	23 - 120	5.2e-08	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	129 - 177	5e-08	Glycosyl hydrolases family 17
X8	PF07983	187 - 242	1.2e-11	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24330
fragaria_vesca	FvH4_1g05390
malus_domestica	MD15G1190100.v1.1
prunus_persica	Prupe.7G227000_v2.0.a1
pyrus_communis	pycom02g04350 pycom15g17040
rosa_chinensis	RchiOBHm_Chr2g0091081
rosa_laevigata	RLG00000016175 RLG00000016182
rosa_multiflora	Rmu_sc0005171.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150520 Rroxscaffold_2G00150610
rosa_rugosa	Rorug02G0012400 Rorug02G0013200
rosa_samantha	Rh2AG058500 Rh2BG057000 Rh2BG058000 Rh2CG059100 Rh2CG059800 Rh2DG058500 Rh2DG058800
rosa_wichuraiana	Rw2G005070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AccII	CGCG	1 cut(s)	29
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	94, 737
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	309, 327, 640, 752
AflII	CTTAAG	1 cut(s)	379
AflIII	ACRYGT	3 cut(s)	45, 115, 669
AgsI	TTSAA	2 cut(s)	69, 218
AjnI	CCWGG	2 cut(s)	466, 639
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 509, 541
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	4 cut(s)	19, 36, 155, 782
AluI	AGCT	4 cut(s)	19, 36, 155, 782
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	94, 737
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	652
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	702
AsuHPI	GGTGA	3 cut(s)	272, 824, 838
AvaII	GGWCC	1 cut(s)	702
AxyI	CCTNAGG	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	4 cut(s)	227, 500, 721, 754
BciT130I	CCWGG	2 cut(s)	468, 641
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	3 cut(s)	33, 305, 402
BfmI	CTRYAG	1 cut(s)	869
BfrI	CTTAAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	273
BisI	GCNGC	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	473
Bme1390I	CCNGG	2 cut(s)	468, 641
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	468, 641
BmrI	ACTGGG	2 cut(s)	243, 764
BmsI	GCATC	2 cut(s)	277, 529
BmuI	ACTGGG	2 cut(s)	243, 764
Bpu10I	CCTNAGC	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	741
BsaI	GGTCTC	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	4 cut(s)	309, 327, 640, 752
Bse1I	ACTGG	3 cut(s)	103, 249, 770
Bse21I	CCTNAGG	1 cut(s)	607
Bse3DI	GCAATG	2 cut(s)	459, 491
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	468, 641
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	4 cut(s)	309, 327, 640, 752
BseMI	GCAATG	2 cut(s)	459, 491
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	103, 249, 770
BseXI	GCAGC	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	588
BslI	CCNNNNNNNGG	4 cut(s)	309, 327, 640, 752
BsmAI	GTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	588
Bso31I	GGTCTC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	99, 345, 742
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	332
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	94, 737
BspTI	CTTAAG	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	459, 491
BsrI	ACTGG	3 cut(s)	103, 249, 770
BssMI	GATC	3 cut(s)	99, 345, 742
Bst2UI	CCWGG	2 cut(s)	468, 641
Bst4CI	ACNGT	2 cut(s)	166, 798
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	4 cut(s)	96, 185, 607, 635
BstEII	GGTNACC	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	638
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	102, 348, 745
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	3 cut(s)	99, 345, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 659
BstNI	CCWGG	2 cut(s)	468, 641
BstNSI	RCATGY	4 cut(s)	49, 119, 377, 673
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	466, 639
BstSFI	CTRYAG	1 cut(s)	869
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	99, 742
BstYI	RGATCY	2 cut(s)	99, 742
Bsu36I	CCTNAGG	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	588
BtgZI	GCGATG	1 cut(s)	740
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	3 cut(s)	56, 777, 794
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	5 cut(s)	46, 116, 374, 412, 670
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	4 cut(s)	96, 185, 607, 635
DpnI	GATC	3 cut(s)	101, 347, 744
DpnII	GATC	3 cut(s)	99, 345, 742
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	702
Eco81I	CCTNAGG	1 cut(s)	607
Eco91I	GGTNACC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	466, 639
FaeI	CATG	5 cut(s)	49, 119, 377, 415, 673
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FatI	CATG	5 cut(s)	45, 115, 373, 411, 669
Fnu4HI	GCNGC	1 cut(s)	472
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	472
FspBI	CTAG	3 cut(s)	33, 305, 402
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	588
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	5 cut(s)	49, 119, 377, 415, 673
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	94, 862
HphI	GGTGA	3 cut(s)	272, 824, 838
Hpy166II	GTNNAC	2 cut(s)	43, 169
Hpy188I	TCNGA	3 cut(s)	99, 538, 595
Hpy8I	GTNNAC	2 cut(s)	43, 169
HpyAV	CCTTC	2 cut(s)	799, 801
HpyCH4III	ACNGT	2 cut(s)	166, 798
HpyCH4V	TGCA	4 cut(s)	12, 290, 627, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 659
HpyF3I	CTNAG	4 cut(s)	96, 185, 607, 635
Hsp92II	CATG	5 cut(s)	49, 119, 377, 415, 673
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	99, 345, 742
LmnI	GCTCC	4 cut(s)	66, 160, 469, 793
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	2 cut(s)	277, 529
MaeI	CTAG	3 cut(s)	33, 305, 402
MaeIII	GTNAC	2 cut(s)	260, 707
MalI	GATC	3 cut(s)	101, 347, 744
MboI	GATC	3 cut(s)	99, 345, 742
MboII	GAAGA	2 cut(s)	355, 612
MflI	RGATCY	2 cut(s)	99, 742
MluCI	AATT	4 cut(s)	218, 524, 764, 834
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	334, 422
MnlI	CCTC	5 cut(s)	352, 446, 474, 802, 836
MroXI	GAANNNNTTC	1 cut(s)	652
MseI	TTAA	3 cut(s)	369, 380, 666
MslI	CAYNNNNRTG	2 cut(s)	114, 278
MspCI	CTTAAG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	468, 641
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	468, 641
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	490, 659
NdeII	GATC	3 cut(s)	99, 345, 742
NlaIII	CATG	5 cut(s)	49, 119, 377, 415, 673
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	2 cut(s)	260, 707
NspI	RCATGY	4 cut(s)	49, 119, 377, 673
OliI	CACNNNNGTG	1 cut(s)	278
PciI	ACATGT	3 cut(s)	45, 115, 669
PctI	GAATGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	652
PfeI	GAWTC	1 cut(s)	862
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	473
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	3 cut(s)	45, 115, 669
Psp6I	CCWGG	2 cut(s)	466, 639
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	2 cut(s)	466, 639
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	702
PsuI	RGATCY	2 cut(s)	99, 742
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	2 cut(s)	114, 278
SaqAI	TTAA	3 cut(s)	369, 380, 666
SatI	GCNGC	1 cut(s)	472
Sau3AI	GATC	3 cut(s)	99, 345, 742
Sau96I	GGNCC	1 cut(s)	702
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	468, 641
SfaNI	GCATC	2 cut(s)	277, 529
SfcI	CTRYAG	1 cut(s)	869
SinI	GGWCC	1 cut(s)	702
SmiMI	CAYNNNNRTG	2 cut(s)	114, 278
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	4 cut(s)	218, 524, 764, 834
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	3 cut(s)	33, 305, 402
StyD4I	CCNGG	2 cut(s)	466, 639
TaaI	ACNGT	2 cut(s)	166, 798
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	218, 524, 764, 834
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	1 cut(s)	862
Tru1I	TTAA	3 cut(s)	369, 380, 666
Tru9I	TTAA	3 cut(s)	369, 380, 666
TscAI	CASTG	3 cut(s)	63, 777, 801
TseFI	GTSAC	2 cut(s)	260, 707
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	2 cut(s)	260, 707
TspDTI	ATGAA	7 cut(s)	98, 165, 210, 356, 459, 831, 845
TspRI	CASTG	3 cut(s)	63, 777, 801
Tth111I	GACNNNGTC	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	702
XagI	CCTNNNNNAGG	1 cut(s)	638
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	4 cut(s)	49, 119, 377, 673
XmnI	GAANNNNTTC	1 cut(s)	652
XspI	CTAG	3 cut(s)	33, 305, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.