Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005171.1

Orthogroup ID

OG0009017

Physical Location & Seq

Genomic Coordinates Reverse (-)

42487 .. 44597

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005171.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

atgctgctggttcttgttttcatggcccataaaggttggagctttggagtcaactgggggactatggcaacgcaccagctcccacctgagaaagtggttcaaatgcttgaagataatgggtttactaagctcaagctgtttgaagctgatcagaaaattttagaggctcttactgggactaaaattgaggtcatgttggccatacccaatttcatgttgcaggagatgagtatagaccctgttgctgcattttcttgggtcgatgccaatgtcacctcttattgctatgatggtggagtgaatatcaagtatgtcgcagtaggcaatgaaccctttctcaaagcgtacaatggcacctatttaaggactacattaccagccctgaagaacatccaggaagctctcaaccgcgccgggcttggctcacaggtcaaagccacagtgcccttcaatgctgacatctacttctcccctgactcaaacccagttccatccacaggcgactttcggcctgaacttaaagacaatgtgattgagatagtccaatacctatataccaatgaggctccattcacagtcaacatctacccttttctgagcctctatggaaatgcctatttccctttcgaatttgctttctttgatggaacaagcaagcccattagagatggtgacctgctctacaccaatgtgtttgatgcaaactttgacacccttgtttggtctctaaccaaagctgggttccctgacatgaagatcatagtcggagaggtgggttggccaactgatggagttgtaaatgccaatatcccaaatgccaaaagatttaatcagggaatgcttaaacatgccttaagtggaaatggaactccagctaggaaaggcatgattgatgtctatctttttagcctcatcgatgaaaatgccaaaagcattgctcccggctgctttgagaggcattgggggctgttcgagtttgatgggaagccgaagtacgaattggatttgtcgggttcagtgcagaataagggacttgtagctgtggaaggtgtggattatctgtccaaaaggtggtgtgtgctgaatccagaggctaaagatttgtatggtttgccaagtagcattgactatgcttgtagcctctcagattgtactgccttgggttatggttcttcttgcaataaccttagcctggagaataagggacttgtagctgtggaaggtgtggattatatgtccaaaaggtggtgtgtgctgaatccagaggctaaagatttgtatggtttgccaagtagcattgactatgcttgtagcctctcagattgtactgccttgggttatggttcttcttgcaataaccttagcctggaagggaatgcttcttatgcttttaacatgtattaccaagtgaatgaccagaaaatatggacctgtgacttctctggtttggcgatggtgacagataaagatccatcagtagggggttgccaattcccagtgatgatagcttatgctccttcacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

508

Amino Acids

55.97

Weight (kDa)

4.74

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24330
fragaria_vesca	FvH4_1g05390
malus_domestica	MD15G1190100.v1.1
prunus_persica	Prupe.7G227000_v2.0.a1
pyrus_communis	pycom02g04350 pycom15g17040
rosa_chinensis	RchiOBHm_Chr2g0091081
rosa_laevigata	RLG00000016175 RLG00000016182
rosa_multiflora	Rmu_sc0005171.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150520 Rroxscaffold_2G00150610
rosa_rugosa	Rorug02G0012400 Rorug02G0013200
rosa_samantha	Rh2AG058500 Rh2BG057000 Rh2BG058000 Rh2CG059100 Rh2CG059800 Rh2DG058500 Rh2DG058800
rosa_wichuraiana	Rw2G005070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	684
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	3 cut(s)	788, 1071, 1245
AccII	CGCG	1 cut(s)	411
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	1 cut(s)	1463
AcoI	YGGCCR	2 cut(s)	198, 779
AcsI	RAATTY	2 cut(s)	156, 629
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	4 cut(s)	347, 995, 1153, 1327
AflII	CTTAAG	1 cut(s)	853
AflIII	ACRYGT	1 cut(s)	1395
AgsI	TTSAA	4 cut(s)	101, 110, 143, 451
AjnI	CCWGG	3 cut(s)	393, 1191, 1365
AjuI	GAANNNNNNNTTGG	4 cut(s)	725, 757, 983, 1015
AleI	CACNNNNGTG	1 cut(s)	689
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	1463
AoxI	GGCC	4 cut(s)	24, 198, 509, 779
ApeKI	GCWGC	3 cut(s)	4, 245, 945
ApoI	RAATTY	2 cut(s)	156, 629
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	25, 1428
AsuC2I	CCSGG	2 cut(s)	415, 942
AsuHPI	GGTGA	3 cut(s)	265, 683, 1468
AsuII	TTCGAA	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	1428
BaeGI	GKGCMC	1 cut(s)	447
BalI	TGGCCA	2 cut(s)	200, 781
BanI	GGYRCC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	977, 1009
BbvI	GCAGC	2 cut(s)	232, 932
BccI	CCATC	8 cut(s)	284, 499, 638, 662, 782, 974, 1447, 1480
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	3 cut(s)	395, 1193, 1367
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	415, 942
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	1 cut(s)	876
BfrI	CTTAAG	1 cut(s)	853
BfuAI	ACCTGC	1 cut(s)	684
BisI	GCNGC	3 cut(s)	5, 246, 946
BlsI	GCNGC	3 cut(s)	6, 247, 947
Bme1390I	CCNGG	5 cut(s)	395, 415, 942, 1193, 1367
Bme18I	GGWCC	1 cut(s)	1428
BmgT120I	GGNCC	2 cut(s)	25, 1428
BmiI	GGNNCC	3 cut(s)	355, 567, 743
BmrFI	CCNGG	5 cut(s)	395, 415, 942, 1193, 1367
BmrI	ACTGGG	4 cut(s)	64, 183, 479, 1490
BmsI	GCATC	2 cut(s)	253, 688
BmuI	ACTGGG	4 cut(s)	64, 183, 479, 1490
BpmI	CTGGAG	2 cut(s)	855, 1214
Bpu10I	CCTNAGC	2 cut(s)	1187, 1361
Bpu14I	TTCGAA	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	2 cut(s)	415, 942
Bsa29I	ATCGAT	1 cut(s)	915
BsaBI	GATNNNNATC	2 cut(s)	897, 1467
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	1158, 1332
Bse1I	ACTGG	4 cut(s)	59, 178, 485, 1496
Bse3DI	GCAATG	2 cut(s)	331, 933
Bse8I	GATNNNNATC	2 cut(s)	897, 1467
BseBI	CCWGG	3 cut(s)	395, 1193, 1367
BseCI	ATCGAT	1 cut(s)	915
BseDI	CCNNGG	2 cut(s)	1158, 1332
BseGI	GGATG	2 cut(s)	390, 491
BseJI	GATNNNNATC	2 cut(s)	897, 1467
BseMI	GCAATG	2 cut(s)	331, 933
BseMII	CTCAG	4 cut(s)	78, 587, 1158, 1332
BseNI	ACTGG	4 cut(s)	59, 178, 485, 1496
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	232, 932
BseYI	CCCAGC	1 cut(s)	737
BsgI	GTGCAG	1 cut(s)	1040
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	26, 200, 511, 781
BshNI	GGYRCC	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	915
BsiSI	CCGG	2 cut(s)	414, 942
BslFI	GGGAC	4 cut(s)	73, 190, 1044, 1218
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	4 cut(s)	73, 190, 1044, 1218
BsmI	GAATGC	2 cut(s)	843, 1381
BsnI	GGCC	4 cut(s)	26, 200, 511, 781
Bso31I	GGTCTC	1 cut(s)	729
Bsp119I	TTCGAA	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	148, 756, 1468
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	4 cut(s)	26, 200, 511, 781
BspCNI	CTCAG	4 cut(s)	79, 588, 1157, 1331
BspDI	ATCGAT	1 cut(s)	915
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	355, 567, 743
BspMI	ACCTGC	1 cut(s)	684
BspPI	GGATC	1 cut(s)	1463
BspT104I	TTCGAA	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	853
BspTNI	GGTCTC	1 cut(s)	729
BsrDI	GCAATG	2 cut(s)	331, 933
BsrI	ACTGG	4 cut(s)	59, 178, 485, 1496
BssECI	CCNNGG	2 cut(s)	1158, 1332
BssMI	GATC	3 cut(s)	148, 756, 1468
BssT1I	CCWWGG	2 cut(s)	1158, 1332
Bst2UI	CCWGG	3 cut(s)	395, 1193, 1367
Bst4CI	ACNGT	2 cut(s)	442, 577
BstAFI	CTTAAG	1 cut(s)	853
BstBI	TTCGAA	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	7 cut(s)	87, 126, 596, 1144, 1187, 1318, 1361
BstEII	GGTNACC	1 cut(s)	671
BstENI	CCTNNNNNAGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	390, 491
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	3 cut(s)	151, 759, 1471
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	3 cut(s)	148, 756, 1468
BstMWI	GCNNNNNNNGC	2 cut(s)	964, 1385
BstNI	CCWGG	3 cut(s)	395, 1193, 1367
BstNSI	RCATGY	2 cut(s)	851, 1399
BstPI	GGTNACC	1 cut(s)	671
BstSCI	CCNGG	5 cut(s)	393, 413, 940, 1191, 1365
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	232, 932
BstX2I	RGATCY	1 cut(s)	1468
BstYI	RGATCY	1 cut(s)	1468
Bsu15I	ATCGAT	1 cut(s)	915
BsuRI	GGCC	4 cut(s)	26, 200, 511, 781
BsuTUI	ATCGAT	1 cut(s)	915
BtgZI	GCGATG	1 cut(s)	1466
BtsCI	GGATG	2 cut(s)	390, 491
BtsIMutI	CAGTG	3 cut(s)	447, 1023, 1503
BveI	ACCTGC	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	656
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	25, 1428
ClaI	ATCGAT	1 cut(s)	915
Csp6I	GTAC	4 cut(s)	346, 994, 1152, 1326
CviAII	CATG	7 cut(s)	22, 193, 214, 751, 848, 886, 1396
CviQI	GTAC	4 cut(s)	346, 994, 1152, 1326
DdeI	CTNAG	7 cut(s)	87, 126, 596, 1144, 1187, 1318, 1361
DpnI	GATC	3 cut(s)	150, 758, 1470
DpnII	GATC	3 cut(s)	148, 756, 1468
EaeI	YGGCCR	2 cut(s)	198, 779
Eco130I	CCWWGG	2 cut(s)	1158, 1332
Eco31I	GGTCTC	1 cut(s)	729
Eco47I	GGWCC	1 cut(s)	1428
Eco57I	CTGAAG	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	671
EcoNI	CCTNNNNNAGG	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	671
EcoRII	CCWGG	3 cut(s)	393, 1191, 1365
EcoT14I	CCWWGG	2 cut(s)	1158, 1332
ErhI	CCWWGG	2 cut(s)	1158, 1332
FaeI	CATG	7 cut(s)	25, 196, 217, 754, 851, 889, 1399
FaqI	GGGAC	4 cut(s)	73, 190, 1044, 1218
FatI	CATG	7 cut(s)	21, 192, 213, 750, 847, 885, 1395
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	5, 246, 946
FokI	GGATG	2 cut(s)	377, 478
Fsp4HI	GCNGC	3 cut(s)	5, 246, 946
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	3 cut(s)	5, 246, 946
GsaI	CCCAGC	1 cut(s)	741
GsuI	CTGGAG	2 cut(s)	855, 1214
HaeIII	GGCC	4 cut(s)	26, 200, 511, 781
HapII	CCGG	2 cut(s)	414, 942
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	7 cut(s)	25, 196, 217, 754, 851, 889, 1399
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	2 cut(s)	52, 580
HindII	GTYRAC	2 cut(s)	52, 580
HinfI	GANTC	4 cut(s)	48, 476, 1084, 1258
HpaII	CCGG	2 cut(s)	414, 942
HphI	GGTGA	3 cut(s)	265, 683, 1468
Hpy166II	GTNNAC	3 cut(s)	52, 123, 580
Hpy188I	TCNGA	5 cut(s)	153, 597, 767, 1147, 1321
Hpy188III	TCNNGA	2 cut(s)	1088, 1262
Hpy8I	GTNNAC	3 cut(s)	52, 123, 580
HpyAV	CCTTC	5 cut(s)	457, 1040, 1214, 1364, 1527
HpyCH4III	ACNGT	2 cut(s)	442, 577
HpyCH4V	TGCA	6 cut(s)	220, 248, 701, 1021, 1179, 1353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	964, 1385
HpyF3I	CTNAG	7 cut(s)	87, 126, 596, 1144, 1187, 1318, 1361
Hsp92II	CATG	7 cut(s)	25, 196, 217, 754, 851, 889, 1399
HspAI	GCGC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	148, 756, 1468
LmnI	GCTCC	5 cut(s)	39, 84, 571, 943, 1519
Lsp1109I	GCAGC	2 cut(s)	232, 932
LweI	GCATC	2 cut(s)	253, 688
MaeI	CTAG	1 cut(s)	876
MaeIII	GTNAC	4 cut(s)	271, 671, 1433, 1456
MalI	GATC	3 cut(s)	150, 758, 1470
MboI	GATC	3 cut(s)	148, 756, 1468
MboII	GAAGA	5 cut(s)	122, 397, 766, 1164, 1338
MflI	RGATCY	1 cut(s)	1468
MhlI	GDGCHC	1 cut(s)	447
MlsI	TGGCCA	2 cut(s)	200, 781
MluCI	AATT	6 cut(s)	156, 183, 208, 629, 998, 1490
MluNI	TGGCCA	2 cut(s)	200, 781
MlyI	GAGTC	2 cut(s)	57, 470
MmeI	TCCRAC	2 cut(s)	17, 745
Mox20I	TGGCCA	2 cut(s)	200, 781
MroXI	GAANNNNTTC	1 cut(s)	333
MscI	TGGCCA	2 cut(s)	200, 781
MseI	TTAA	6 cut(s)	362, 519, 828, 843, 854, 1392
MslI	CAYNNNNRTG	1 cut(s)	689
Msp20I	TGGCCA	2 cut(s)	200, 781
MspCI	CTTAAG	1 cut(s)	853
MspI	CCGG	2 cut(s)	414, 942
MspR9I	CCNGG	5 cut(s)	395, 415, 942, 1193, 1367
Mva1269I	GAATGC	2 cut(s)	843, 1381
MvaI	CCWGG	3 cut(s)	395, 1193, 1367
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	964, 1385
NciI	CCSGG	2 cut(s)	415, 942
NdeII	GATC	3 cut(s)	148, 756, 1468
NlaIII	CATG	7 cut(s)	25, 196, 217, 754, 851, 889, 1399
NlaIV	GGNNCC	3 cut(s)	355, 567, 743
NmuCI	GTSAC	4 cut(s)	271, 671, 1433, 1456
NspI	RCATGY	2 cut(s)	851, 1399
NspV	TTCGAA	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	689
PciI	ACATGT	1 cut(s)	1395
PctI	GAATGC	2 cut(s)	843, 1381
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	1084, 1258
PflMI	CCANNNNNTGG	3 cut(s)	788, 1071, 1245
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	6, 247, 947
PleI	GAGTC	2 cut(s)	56, 470
PpsI	GAGTC	2 cut(s)	56, 470
PscI	ACATGT	1 cut(s)	1395
Psp6I	CCWGG	3 cut(s)	393, 1191, 1365
PspEI	GGTNACC	1 cut(s)	671
PspFI	CCCAGC	1 cut(s)	737
PspGI	CCWGG	3 cut(s)	393, 1191, 1365
PspN4I	GGNNCC	3 cut(s)	355, 567, 743
PspPI	GGNCC	2 cut(s)	25, 1428
PsuI	RGATCY	1 cut(s)	1468
RsaI	GTAC	4 cut(s)	347, 995, 1153, 1327
RsaNI	GTAC	4 cut(s)	346, 994, 1152, 1326
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	6 cut(s)	362, 519, 828, 843, 854, 1392
SatI	GCNGC	3 cut(s)	5, 246, 946
Sau3AI	GATC	3 cut(s)	148, 756, 1468
Sau96I	GGNCC	2 cut(s)	25, 1428
SchI	GAGTC	2 cut(s)	57, 470
ScrFI	CCNGG	5 cut(s)	395, 415, 942, 1193, 1367
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	253, 688
SfuI	TTCGAA	1 cut(s)	627
SinI	GGWCC	1 cut(s)	1428
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	2 cut(s)	131, 853
SmoI	CTYRAG	2 cut(s)	131, 853
Sse9I	AATT	6 cut(s)	156, 183, 208, 629, 998, 1490
SsiI	CCGC	1 cut(s)	409
SspMI	CTAG	1 cut(s)	876
StyD4I	CCNGG	5 cut(s)	393, 413, 940, 1191, 1365
StyI	CCWWGG	2 cut(s)	1158, 1332
TaaI	ACNGT	2 cut(s)	442, 577
TaqI	TCGA	4 cut(s)	261, 627, 915, 972
TasI	AATT	6 cut(s)	156, 183, 208, 629, 998, 1490
TatI	WGTACW	2 cut(s)	1151, 1325
TfiI	GAWTC	2 cut(s)	1084, 1258
Tru1I	TTAA	6 cut(s)	362, 519, 828, 843, 854, 1392
Tru9I	TTAA	6 cut(s)	362, 519, 828, 843, 854, 1392
TscAI	CASTG	3 cut(s)	447, 1023, 1503
TseFI	GTSAC	4 cut(s)	271, 671, 1433, 1456
TseI	GCWGC	3 cut(s)	4, 245, 945
Tsp45I	GTSAC	4 cut(s)	271, 671, 1433, 1456
TspDTI	ATGAA	5 cut(s)	10, 202, 342, 767, 933
TspRI	CASTG	3 cut(s)	447, 1023, 1503
Van91I	CCANNNNNTGG	3 cut(s)	788, 1071, 1245
Vha464I	CTTAAG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	1428
XagI	CCTNNNNNAGG	1 cut(s)	361
XapI	RAATTY	2 cut(s)	156, 629
XceI	RCATGY	2 cut(s)	851, 1399
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.