RLG00000016175

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
4460312 .. 4462338
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016175

Sequence Viewer

Length: 1470 bp
ATGGTGCATGAAAAAGTCCCAAAGGCCAAGTCTTTCTTGGTCACAATGCTGCTGGTTCTTGTTTTCATGGCCCATAAAGGTTGGAGCTTTGGAGTCAACTGGGGGACTATGGCAACGCACCAGCTCCCACCTGAGAAAGTGGTTCAAATGCTTGAAGATAATGGGTTTACTAAGCTCAAGCTGTTTGAAGCTGACCAGAAAATTTTAGAGGCTCTTACTGGGACTAAAATTGAGGTCATGTTGGCCATACCCAATTTGATGTTGCAGGAGATGAGTATAGATCCTGTTGCTGCATTTTCTTGGGTCGATGCCAATGTCACCTCTTATTGCTATGATGGTGGAGTCAATATCAAGTATGTCGCAGTAGGCAATGAACCCTTTCTCAAAGCATACAATGGCACCTATTTAAAGACTACATTACCAGCCCTGAAGAACATCCAGGAAGCTCTCAACCGCGCCGGGCTTGGCTCACAGGTCAAAGCCACAGTGCCCTTCAATGCTGACATCTACTTCTCCCCTGACTCAAACCCAGTTCCATCCACAGGCGACTTTCGGCCTGAACTTAAAGACAATGTGATTGAGATAGTCCAATACCTATATACCAATGAGGCTCCATTCACGGTCAACATCTACCCTTTTCTGAGCCTCTATGGAAATGCCTATTTCCCTTTCGAATTTGCTTTCTTTGATGGAACAAGCAAGCCCATTAGAGATGGTGACCTGCTCTACACCAACGTGTTTGATGCAAACTTTGACACCCTTGTTTGGTCTCTAACCAAAGCTGGGTTCCCTGAAATGAAGATCATAGTAGGAGAGGTGGGTTGGCCAACTGATGGAGTTGTAAATGCCAATATCCCAAATGCCAAAAGATTTAATCAGGGAATGCTTAAACATGCCTTAAGTGGAAATGGAACTCCAGCTAGGAAAGGCATGATTGATGTCTATCTTTTTAGCCTCATCGATGAAAATGCCAAAAGCATTGCTCCCGGCTGCTTTGAGAGGCATTGGGGGCTGTTCGAGTTTGATGGGAAGCCGAAGTACGAATTGGATTTGTCGGGTTCAGTGCAGAATAAGGGACTTGTAGCTGTGGAAGGTGTGGATTATATGTCCAAAAGGTGGTGTGTGCTGAATCCAGAGGCTAGAGATTTGTATGGTTTGCCAAGTAGCATTGACTATGCTTGTAGCCTCTCAGATTGTACTGCCTTGGGTTATGGTTCTTCTTGCAATAACCTTAGCCTGGAAGGGAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTGGTTTGGCAATGGTGACCGATAAAGATCCATCAGTAGGGGGTTGCCAATTCCCAGTGATGATAGCTTATGCTCCTTCACTGTTGCAGAATAGGGGGATTTTACACATGGTGATGAAAATTATTGGAGGGTGTATGCTGTTTTGGATTCTGCTATAG

Protein Analysis

490

Amino Acids

54.22

Weight (kDa)

5.14

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 31 - 350 1.2e-60 Glycosyl hydrolases family 17
X8 PF07983 373 - 442 1.6e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 398
AccB7I CCANNNNNTGG 2 cut(s) 833, 1116
AccII CGCG 1 cut(s) 456
AciI CCGC 1 cut(s) 454
AclWI GGATC 2 cut(s) 275, 1334
AcoI YGGCCR 2 cut(s) 243, 824
AcsI RAATTY 2 cut(s) 201, 674
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 1423
AfaI GTAC 2 cut(s) 1040, 1198
AfiI CCNNNNNNNGG 7 cut(s) 542, 765, 783, 833, 1116, 1237, 1349
AflII CTTAAG 1 cut(s) 898
AflIII ACRYGT 2 cut(s) 735, 1266
AgsI TTSAA 4 cut(s) 146, 155, 188, 496
AjnI CCWGG 2 cut(s) 438, 1236
AjuI GAANNNNNNNTTGG 4 cut(s) 770, 802, 1028, 1060
AleI CACNNNNGTG 1 cut(s) 734
Alw26I GTCTC 1 cut(s) 774
AlwI GGATC 2 cut(s) 275, 1334
AoxI GGCC 5 cut(s) 24, 69, 243, 554, 824
ApeKI GCWGC 3 cut(s) 49, 290, 990
ApoI RAATTY 2 cut(s) 201, 674
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 70, 1299
AsuC2I CCSGG 2 cut(s) 460, 987
AsuHPI GGTGA 4 cut(s) 310, 728, 1339, 1435
AsuII TTCGAA 1 cut(s) 672
AvaII GGWCC 1 cut(s) 1299
BaeGI GKGCMC 1 cut(s) 492
BalI TGGCCA 2 cut(s) 245, 826
BanI GGYRCC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 1022, 1054
BbvI GCAGC 3 cut(s) 36, 277, 977
BccI CCATC 7 cut(s) 329, 544, 683, 707, 827, 1019, 1351
BcgI CGANNNNNNTGC 2 cut(s) 950, 984
BciT130I CCWGG 2 cut(s) 440, 1238
BcnI CCSGG 2 cut(s) 460, 987
BcoDI GTCTC 1 cut(s) 774
BfaI CTAG 2 cut(s) 921, 1140
BfmI CTRYAG 1 cut(s) 1466
BfrI CTTAAG 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 729
BisI GCNGC 3 cut(s) 50, 291, 991
BlsI GCNGC 3 cut(s) 51, 292, 992
Bme1390I CCNGG 4 cut(s) 440, 460, 987, 1238
Bme18I GGWCC 1 cut(s) 1299
BmgT120I GGNCC 2 cut(s) 70, 1299
BmiI GGNNCC 3 cut(s) 400, 612, 788
BmrFI CCNGG 4 cut(s) 440, 460, 987, 1238
BmrI ACTGGG 4 cut(s) 109, 228, 524, 1361
BmsI GCATC 2 cut(s) 298, 733
BmuI ACTGGG 4 cut(s) 109, 228, 524, 1361
BpmI CTGGAG 1 cut(s) 900
Bpu10I CCTNAGC 1 cut(s) 1232
Bpu14I TTCGAA 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 2 cut(s) 460, 987
Bsa29I ATCGAT 1 cut(s) 960
BsaBI GATNNNNATC 2 cut(s) 942, 1338
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 1203
Bsc4I CCNNNNNNNGG 7 cut(s) 542, 765, 783, 833, 1116, 1237, 1349
Bse1I ACTGG 4 cut(s) 104, 223, 530, 1367
Bse3DI GCAATG 3 cut(s) 376, 978, 1329
Bse8I GATNNNNATC 2 cut(s) 942, 1338
BseBI CCWGG 2 cut(s) 440, 1238
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 1 cut(s) 1203
BseGI GGATG 2 cut(s) 435, 536
BseJI GATNNNNATC 2 cut(s) 942, 1338
BseLI CCNNNNNNNGG 7 cut(s) 542, 765, 783, 833, 1116, 1237, 1349
BseMI GCAATG 3 cut(s) 376, 978, 1329
BseMII CTCAG 3 cut(s) 123, 632, 1203
BseNI ACTGG 4 cut(s) 104, 223, 530, 1367
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 3 cut(s) 36, 277, 977
BseYI CCCAGC 1 cut(s) 782
BsgI GTGCAG 1 cut(s) 1085
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 5 cut(s) 26, 71, 245, 556, 826
BshNI GGYRCC 1 cut(s) 398
BshVI ATCGAT 1 cut(s) 960
BsiSI CCGG 2 cut(s) 459, 987
BslFI GGGAC 4 cut(s) 2, 118, 235, 1089
BslI CCNNNNNNNGG 7 cut(s) 542, 765, 783, 833, 1116, 1237, 1349
BsmAI GTCTC 1 cut(s) 774
BsmFI GGGAC 4 cut(s) 2, 118, 235, 1089
BsmI GAATGC 2 cut(s) 888, 1252
BsnI GGCC 5 cut(s) 26, 71, 245, 556, 826
Bso31I GGTCTC 1 cut(s) 774
Bsp119I TTCGAA 1 cut(s) 672
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 3 cut(s) 280, 801, 1339
BspACI CCGC 1 cut(s) 454
BspANI GGCC 5 cut(s) 26, 71, 245, 556, 826
BspCNI CTCAG 3 cut(s) 124, 633, 1202
BspDI ATCGAT 1 cut(s) 960
BspFNI CGCG 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 400, 612, 788
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 2 cut(s) 275, 1334
BspT104I TTCGAA 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 398
BspTI CTTAAG 1 cut(s) 898
BspTNI GGTCTC 1 cut(s) 774
BsrDI GCAATG 3 cut(s) 376, 978, 1329
BsrI ACTGG 4 cut(s) 104, 223, 530, 1367
BssECI CCNNGG 1 cut(s) 1203
BssMI GATC 3 cut(s) 280, 801, 1339
BssT1I CCWWGG 1 cut(s) 1203
Bst2UI CCWGG 2 cut(s) 440, 1238
Bst4CI ACNGT 3 cut(s) 487, 622, 1395
BstAFI CTTAAG 1 cut(s) 898
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 5 cut(s) 132, 171, 641, 1189, 1232
BstEII GGTNACC 2 cut(s) 716, 1327
BstF5I GGATG 2 cut(s) 435, 536
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 3 cut(s) 283, 804, 1342
BstMAI GTCTC 1 cut(s) 774
BstMBI GATC 3 cut(s) 280, 801, 1339
BstMWI GCNNNNNNNGC 2 cut(s) 1009, 1256
BstNI CCWGG 2 cut(s) 440, 1238
BstNSI RCATGY 2 cut(s) 896, 1270
BstPI GGTNACC 2 cut(s) 716, 1327
BstSCI CCNGG 4 cut(s) 438, 458, 985, 1236
BstSFI CTRYAG 1 cut(s) 1466
BstSLI GKGCMC 1 cut(s) 492
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 3 cut(s) 36, 277, 977
BstX2I RGATCY 2 cut(s) 280, 1339
BstYI RGATCY 2 cut(s) 280, 1339
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 5 cut(s) 26, 71, 245, 556, 826
BsuTUI ATCGAT 1 cut(s) 960
BtsCI GGATG 2 cut(s) 435, 536
BtsIMutI CAGTG 4 cut(s) 492, 1068, 1374, 1391
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 701
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 70, 1299
ClaI ATCGAT 1 cut(s) 960
Csp6I GTAC 2 cut(s) 1039, 1197
CviAII CATG 7 cut(s) 8, 67, 238, 893, 931, 1267, 1420
CviQI GTAC 2 cut(s) 1039, 1197
DdeI CTNAG 5 cut(s) 132, 171, 641, 1189, 1232
DpnI GATC 3 cut(s) 282, 803, 1341
DpnII GATC 3 cut(s) 280, 801, 1339
DraI TTTAAA 1 cut(s) 408
DraIII CACNNNGTG 1 cut(s) 1423
EaeI YGGCCR 2 cut(s) 243, 824
Eco130I CCWWGG 1 cut(s) 1203
Eco31I GGTCTC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 1299
Eco57I CTGAAG 1 cut(s) 449
Eco91I GGTNACC 2 cut(s) 716, 1327
EcoO65I GGTNACC 2 cut(s) 716, 1327
EcoRII CCWGG 2 cut(s) 438, 1236
EcoT14I CCWWGG 1 cut(s) 1203
ErhI CCWWGG 1 cut(s) 1203
FaeI CATG 7 cut(s) 11, 70, 241, 896, 934, 1270, 1423
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 4 cut(s) 2, 118, 235, 1089
FatI CATG 7 cut(s) 7, 66, 237, 892, 930, 1266, 1419
Fnu4HI GCNGC 3 cut(s) 50, 291, 991
FokI GGATG 2 cut(s) 422, 523
Fsp4HI GCNGC 3 cut(s) 50, 291, 991
FspBI CTAG 2 cut(s) 921, 1140
GlaI GCGC 1 cut(s) 457
GluI GCNGC 3 cut(s) 50, 291, 991
GsaI CCCAGC 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 900
HaeIII GGCC 5 cut(s) 26, 71, 245, 556, 826
HapII CCGG 2 cut(s) 459, 987
HhaI GCGC 1 cut(s) 458
Hin1II CATG 7 cut(s) 11, 70, 241, 896, 934, 1270, 1423
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 2 cut(s) 97, 625
HindII GTYRAC 2 cut(s) 97, 625
HinfI GANTC 5 cut(s) 93, 342, 521, 1129, 1459
HpaII CCGG 2 cut(s) 459, 987
HphI GGTGA 4 cut(s) 310, 728, 1339, 1435
Hpy166II GTNNAC 3 cut(s) 97, 168, 625
Hpy188I TCNGA 2 cut(s) 642, 1192
Hpy188III TCNNGA 1 cut(s) 1133
Hpy8I GTNNAC 3 cut(s) 97, 168, 625
HpyAV CCTTC 4 cut(s) 502, 1085, 1235, 1398
HpyCH4III ACNGT 3 cut(s) 487, 622, 1395
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 7 cut(s) 7, 265, 293, 746, 1066, 1224, 1399
HpyF10VI GCNNNNNNNGC 2 cut(s) 1009, 1256
HpyF3I CTNAG 5 cut(s) 132, 171, 641, 1189, 1232
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 7 cut(s) 11, 70, 241, 896, 934, 1270, 1423
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 280, 801, 1339
LmnI GCTCC 5 cut(s) 84, 129, 616, 988, 1390
Lsp1109I GCAGC 3 cut(s) 36, 277, 977
LweI GCATC 2 cut(s) 298, 733
MaeI CTAG 2 cut(s) 921, 1140
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 5 cut(s) 40, 316, 716, 1304, 1327
MalI GATC 3 cut(s) 282, 803, 1341
MboI GATC 3 cut(s) 280, 801, 1339
MboII GAAGA 4 cut(s) 167, 442, 811, 1209
MflI RGATCY 2 cut(s) 280, 1339
MhlI GDGCHC 1 cut(s) 492
MlsI TGGCCA 2 cut(s) 245, 826
MluCI AATT 7 cut(s) 201, 228, 253, 674, 1043, 1361, 1431
MluNI TGGCCA 2 cut(s) 245, 826
MlyI GAGTC 3 cut(s) 102, 351, 515
MmeI TCCRAC 1 cut(s) 62
Mox20I TGGCCA 2 cut(s) 245, 826
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 2 cut(s) 245, 826
MseI TTAA 6 cut(s) 407, 564, 873, 888, 899, 1263
MslI CAYNNNNRTG 2 cut(s) 734, 1424
Msp20I TGGCCA 2 cut(s) 245, 826
MspCI CTTAAG 1 cut(s) 898
MspI CCGG 2 cut(s) 459, 987
MspR9I CCNGG 4 cut(s) 440, 460, 987, 1238
Mva1269I GAATGC 2 cut(s) 888, 1252
MvaI CCWGG 2 cut(s) 440, 1238
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 2 cut(s) 1009, 1256
NciI CCSGG 2 cut(s) 460, 987
NdeII GATC 3 cut(s) 280, 801, 1339
NlaIII CATG 7 cut(s) 11, 70, 241, 896, 934, 1270, 1423
NlaIV GGNNCC 3 cut(s) 400, 612, 788
NmuCI GTSAC 5 cut(s) 40, 316, 716, 1304, 1327
NspI RCATGY 2 cut(s) 896, 1270
NspV TTCGAA 1 cut(s) 672
OliI CACNNNNGTG 1 cut(s) 734
PciI ACATGT 1 cut(s) 1266
PctI GAATGC 2 cut(s) 888, 1252
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 2 cut(s) 1129, 1459
PflMI CCANNNNNTGG 2 cut(s) 833, 1116
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 3 cut(s) 51, 292, 992
PleI GAGTC 3 cut(s) 101, 350, 515
PpsI GAGTC 3 cut(s) 101, 350, 515
PscI ACATGT 1 cut(s) 1266
Psp6I CCWGG 2 cut(s) 438, 1236
PspEI GGTNACC 2 cut(s) 716, 1327
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 2 cut(s) 438, 1236
PspN4I GGNNCC 3 cut(s) 400, 612, 788
PspPI GGNCC 2 cut(s) 70, 1299
PsuI RGATCY 2 cut(s) 280, 1339
RsaI GTAC 2 cut(s) 1040, 1198
RsaNI GTAC 2 cut(s) 1039, 1197
RseI CAYNNNNRTG 2 cut(s) 734, 1424
SaqAI TTAA 6 cut(s) 407, 564, 873, 888, 899, 1263
SatI GCNGC 3 cut(s) 50, 291, 991
Sau3AI GATC 3 cut(s) 280, 801, 1339
Sau96I GGNCC 2 cut(s) 70, 1299
SchI GAGTC 3 cut(s) 102, 351, 515
ScrFI CCNGG 4 cut(s) 440, 460, 987, 1238
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 2 cut(s) 298, 733
SfcI CTRYAG 1 cut(s) 1466
SfuI TTCGAA 1 cut(s) 672
SinI GGWCC 1 cut(s) 1299
SmiMI CAYNNNNRTG 2 cut(s) 734, 1424
SmlI CTYRAG 2 cut(s) 176, 898
SmoI CTYRAG 2 cut(s) 176, 898
Sse9I AATT 7 cut(s) 201, 228, 253, 674, 1043, 1361, 1431
SsiI CCGC 1 cut(s) 454
SspMI CTAG 2 cut(s) 921, 1140
StyD4I CCNGG 4 cut(s) 438, 458, 985, 1236
StyI CCWWGG 1 cut(s) 1203
TaaI ACNGT 3 cut(s) 487, 622, 1395
TaiI ACGT 1 cut(s) 738
TaqI TCGA 4 cut(s) 306, 672, 960, 1017
TaqII GACCGA 1 cut(s) 1346
TasI AATT 7 cut(s) 201, 228, 253, 674, 1043, 1361, 1431
TatI WGTACW 1 cut(s) 1196
TfiI GAWTC 2 cut(s) 1129, 1459
Tru1I TTAA 6 cut(s) 407, 564, 873, 888, 899, 1263
Tru9I TTAA 6 cut(s) 407, 564, 873, 888, 899, 1263
TscAI CASTG 4 cut(s) 492, 1068, 1374, 1398
TseFI GTSAC 5 cut(s) 40, 316, 716, 1304, 1327
TseI GCWGC 3 cut(s) 49, 290, 990
Tsp45I GTSAC 5 cut(s) 40, 316, 716, 1304, 1327
TspDTI ATGAA 6 cut(s) 24, 55, 387, 812, 978, 1442
TspRI CASTG 4 cut(s) 492, 1068, 1374, 1398
Van91I CCANNNNNTGG 2 cut(s) 833, 1116
Vha464I CTTAAG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 1299
XapI RAATTY 2 cut(s) 201, 674
XceI RCATGY 2 cut(s) 896, 1270
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 2 cut(s) 921, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.