Rh2BG057000

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
4216721 .. 4219278
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG057000.1

Sequence Viewer

Length: 1476 bp
ATGAGAATGGTGCATGAAAAAGTCCCAAAGGCCAAGTCTTTCTTGGTCACAATGCTGCTGGTTCTTGTTTTCATGGCCCATAAAGGTTGGAGCTTTGGAGTCAACTGGGGGACTATGGCAACGCACCAGCTCCCACCTGAGAAAGTGGTTCAAATGCTTGAAGATAATGGGTTTACTAAGCTCAAGCTGTTTGAAGCTGATCAGAAAATTTTAGAGGCTCTTACTGGGACTAAAATTGAGGTCATGTTGGCCATACCCAATTTCATGTTGCAGGAGATGAGTATAGACCCTGTTGCTGCATTTTCTTGGGTCGATGCCAATGTCACCTCTTATTGCTATGATGGTGGAGTCAATATCAAGTATGTCGCAGTAGGCAATGAACCCTTTCTCAAAGCATACAATGGCACCTATTTAAAGACTACATTACCAGCCCTGAAGAACATCCAGGAAGCTCTCAACCGCGCTGGGCTTGGCTCACAGGTCAAAGCCACAGTGCCCTTCAATGCTGACATCTACTTCTCCCCTGACTCAAACCCAGTTCCATCCACAGGCGACTTTCGGCCTGAACTTAAAGACAATGTGATTGAGATAGTCCAATACCTATATACCAATGAGGCTCCATTCACAGTCAACATCTACCCTTTTCTGAGCCTCTATGGAAATGCCTATTTCCCTTTCGAATTTGCTTTCTTTGATGGAACAAGCAAGCCCATTAGAGATGGTGACCTGCTCTACACCAATGTGTTTGATGCAAACTTGGACACCCTTGTTTGGTCTCTAACCAAAGCTGGGTTCCCTGAAATGAAGATCATAGTCGGAGAGGTGGGTTGGCCAACTGATGGAGTTGTAAATGCCAATATCCCAAATGCCAAAAGATTTAATCAGGGAATGCTTAAACATGCTTTGAGTGGAAATGGAACTCCAGCTAGGAAGGGCATGATTGATGTCTATCTTTTTAGCCTCATCGATGAAAATGCCAAAAGCATTGCTCCCGGCTGCTTTGAGAGGCATTGGGGGCTGTTCGAGTTTGATGGGAAGCCGAAGTACGAATTGGATTTGTCGGGTTCAGTGCAGAATAAGGGACTTGTAGCTGTGGAAGGTGTGGATTATATGTCCAAAAGGTGGTGTGTGCTGAATCCAGAGGCTAAAGATTTGTATGGTTTGCCAAGTAGCATTGACTATGCTTGTAGCCTCTCAGATTGTACTGCCTTGGGTTATGGTTCTTCTTGCAATAACCTTAGCCTGGAAGGGAATGCTTCTTATGCTTTTAACATGTATTACCAAGTGAATGACCAGAAAATATGGACCTGTGACTTCTCTGGTTTGGCAATGGTGACCGATAAAGATCCATCAGTAGGGGGTTGCCAATTCCCAGTGATGATAGCTTATGCTCCTTCATTGTTGCAGAATAGGGGGATTTTACACATGGTGATGAAAATTATTGGAGGGTGTATGCTGTATTGGATTCTGCTATAG

Protein Analysis

491

Amino Acids

54.5

Weight (kDa)

5.22

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 33 - 352 3.6e-61 Glycosyl hydrolases family 17
X8 PF07983 375 - 444 1.7e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 404
AccB7I CCANNNNNTGG 2 cut(s) 839, 1122
AccII CGCG 1 cut(s) 462
AciI CCGC 1 cut(s) 460
AclWI GGATC 1 cut(s) 1340
AcoI YGGCCR 2 cut(s) 249, 830
AcsI RAATTY 2 cut(s) 207, 680
AcuI CTGAAG 1 cut(s) 455
AdeI CACNNNGTG 1 cut(s) 1429
AfaI GTAC 2 cut(s) 1046, 1204
AfiI CCNNNNNNNGG 7 cut(s) 548, 771, 789, 839, 1122, 1243, 1355
AflIII ACRYGT 1 cut(s) 1272
AgsI TTSAA 4 cut(s) 152, 161, 194, 502
AjnI CCWGG 2 cut(s) 444, 1242
AjuI GAANNNNNNNTTGG 4 cut(s) 776, 808, 1034, 1066
AleI CACNNNNGTG 1 cut(s) 740
Alw26I GTCTC 1 cut(s) 780
AlwI GGATC 1 cut(s) 1340
AoxI GGCC 5 cut(s) 30, 75, 249, 560, 830
ApeKI GCWGC 3 cut(s) 55, 296, 996
ApoI RAATTY 2 cut(s) 207, 680
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 2 cut(s) 76, 1305
AsuC2I CCSGG 1 cut(s) 993
AsuHPI GGTGA 4 cut(s) 316, 734, 1345, 1441
AsuII TTCGAA 1 cut(s) 678
AvaII GGWCC 1 cut(s) 1305
BaeGI GKGCMC 1 cut(s) 498
BalI TGGCCA 2 cut(s) 251, 832
BanI GGYRCC 1 cut(s) 404
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BbvI GCAGC 3 cut(s) 42, 283, 983
BccI CCATC 7 cut(s) 335, 550, 689, 713, 833, 1025, 1357
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 2 cut(s) 446, 1244
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 993
BcoDI GTCTC 1 cut(s) 780
BfaI CTAG 1 cut(s) 927
BfmI CTRYAG 1 cut(s) 1472
BfuAI ACCTGC 1 cut(s) 735
BisI GCNGC 3 cut(s) 56, 297, 997
BlsI GCNGC 3 cut(s) 57, 298, 998
Bme1390I CCNGG 3 cut(s) 446, 993, 1244
Bme18I GGWCC 1 cut(s) 1305
BmgT120I GGNCC 2 cut(s) 76, 1305
BmiI GGNNCC 3 cut(s) 406, 618, 794
BmrFI CCNGG 3 cut(s) 446, 993, 1244
BmrI ACTGGG 4 cut(s) 115, 234, 530, 1367
BmsI GCATC 2 cut(s) 304, 739
BmuI ACTGGG 4 cut(s) 115, 234, 530, 1367
BpmI CTGGAG 1 cut(s) 906
Bpu10I CCTNAGC 1 cut(s) 1238
Bpu14I TTCGAA 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 993
Bsa29I ATCGAT 1 cut(s) 966
BsaBI GATNNNNATC 2 cut(s) 948, 1344
BsaI GGTCTC 1 cut(s) 780
BsaJI CCNNGG 1 cut(s) 1209
Bsc4I CCNNNNNNNGG 7 cut(s) 548, 771, 789, 839, 1122, 1243, 1355
Bse1I ACTGG 4 cut(s) 110, 229, 536, 1373
Bse3DI GCAATG 3 cut(s) 382, 984, 1335
Bse8I GATNNNNATC 2 cut(s) 948, 1344
BseBI CCWGG 2 cut(s) 446, 1244
BseCI ATCGAT 1 cut(s) 966
BseDI CCNNGG 1 cut(s) 1209
BseGI GGATG 2 cut(s) 441, 542
BseJI GATNNNNATC 2 cut(s) 948, 1344
BseLI CCNNNNNNNGG 7 cut(s) 548, 771, 789, 839, 1122, 1243, 1355
BseMI GCAATG 3 cut(s) 382, 984, 1335
BseMII CTCAG 3 cut(s) 129, 638, 1209
BseNI ACTGG 4 cut(s) 110, 229, 536, 1373
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 3 cut(s) 42, 283, 983
BseYI CCCAGC 2 cut(s) 464, 788
BsgI GTGCAG 1 cut(s) 1091
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 5 cut(s) 32, 77, 251, 562, 832
BshNI GGYRCC 1 cut(s) 404
BshVI ATCGAT 1 cut(s) 966
BsiSI CCGG 1 cut(s) 993
BslFI GGGAC 4 cut(s) 8, 124, 241, 1095
BslI CCNNNNNNNGG 7 cut(s) 548, 771, 789, 839, 1122, 1243, 1355
BsmAI GTCTC 1 cut(s) 780
BsmFI GGGAC 4 cut(s) 8, 124, 241, 1095
BsmI GAATGC 2 cut(s) 894, 1258
BsnI GGCC 5 cut(s) 32, 77, 251, 562, 832
Bso31I GGTCTC 1 cut(s) 780
Bsp119I TTCGAA 1 cut(s) 678
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 3 cut(s) 199, 807, 1345
BspACI CCGC 1 cut(s) 460
BspANI GGCC 5 cut(s) 32, 77, 251, 562, 832
BspCNI CTCAG 3 cut(s) 130, 639, 1208
BspDI ATCGAT 1 cut(s) 966
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 3 cut(s) 406, 618, 794
BspMI ACCTGC 1 cut(s) 735
BspPI GGATC 1 cut(s) 1340
BspT104I TTCGAA 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 780
BsrDI GCAATG 3 cut(s) 382, 984, 1335
BsrI ACTGG 4 cut(s) 110, 229, 536, 1373
BssECI CCNNGG 1 cut(s) 1209
BssMI GATC 3 cut(s) 199, 807, 1345
BssT1I CCWWGG 1 cut(s) 1209
Bst2UI CCWGG 2 cut(s) 446, 1244
Bst4CI ACNGT 2 cut(s) 493, 628
BstBI TTCGAA 1 cut(s) 678
BstC8I GCNNGC 1 cut(s) 707
BstDEI CTNAG 5 cut(s) 138, 177, 647, 1195, 1238
BstEII GGTNACC 2 cut(s) 722, 1333
BstF5I GGATG 2 cut(s) 441, 542
BstFNI CGCG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 3 cut(s) 202, 810, 1348
BstMAI GTCTC 1 cut(s) 780
BstMBI GATC 3 cut(s) 199, 807, 1345
BstMWI GCNNNNNNNGC 2 cut(s) 1015, 1262
BstNI CCWGG 2 cut(s) 446, 1244
BstNSI RCATGY 2 cut(s) 902, 1276
BstPI GGTNACC 2 cut(s) 722, 1333
BstSCI CCNGG 3 cut(s) 444, 991, 1242
BstSFI CTRYAG 1 cut(s) 1472
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 42, 283, 983
BstX2I RGATCY 1 cut(s) 1345
BstYI RGATCY 1 cut(s) 1345
Bsu15I ATCGAT 1 cut(s) 966
BsuRI GGCC 5 cut(s) 32, 77, 251, 562, 832
BsuTUI ATCGAT 1 cut(s) 966
BtsCI GGATG 2 cut(s) 441, 542
BtsIMutI CAGTG 3 cut(s) 498, 1074, 1380
BveI ACCTGC 1 cut(s) 735
Cac8I GCNNGC 1 cut(s) 707
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 76, 1305
ClaI ATCGAT 1 cut(s) 966
Csp6I GTAC 2 cut(s) 1045, 1203
CviAII CATG 8 cut(s) 14, 73, 244, 265, 899, 937, 1273, 1426
CviQI GTAC 2 cut(s) 1045, 1203
DdeI CTNAG 5 cut(s) 138, 177, 647, 1195, 1238
DpnI GATC 3 cut(s) 201, 809, 1347
DpnII GATC 3 cut(s) 199, 807, 1345
DraI TTTAAA 1 cut(s) 414
DraIII CACNNNGTG 1 cut(s) 1429
EaeI YGGCCR 2 cut(s) 249, 830
Eco130I CCWWGG 1 cut(s) 1209
Eco31I GGTCTC 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 1305
Eco57I CTGAAG 1 cut(s) 455
Eco91I GGTNACC 2 cut(s) 722, 1333
EcoO65I GGTNACC 2 cut(s) 722, 1333
EcoRII CCWGG 2 cut(s) 444, 1242
EcoT14I CCWWGG 1 cut(s) 1209
ErhI CCWWGG 1 cut(s) 1209
FaeI CATG 8 cut(s) 17, 76, 247, 268, 902, 940, 1276, 1429
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 4 cut(s) 8, 124, 241, 1095
FatI CATG 8 cut(s) 13, 72, 243, 264, 898, 936, 1272, 1425
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 56, 297, 997
FokI GGATG 2 cut(s) 428, 529
Fsp4HI GCNGC 3 cut(s) 56, 297, 997
FspBI CTAG 1 cut(s) 927
GlaI GCGC 1 cut(s) 463
GluI GCNGC 3 cut(s) 56, 297, 997
GsaI CCCAGC 2 cut(s) 468, 792
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 5 cut(s) 32, 77, 251, 562, 832
HapII CCGG 1 cut(s) 993
HhaI GCGC 1 cut(s) 464
Hin1II CATG 8 cut(s) 17, 76, 247, 268, 902, 940, 1276, 1429
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 2 cut(s) 103, 631
HindII GTYRAC 2 cut(s) 103, 631
HinfI GANTC 5 cut(s) 99, 348, 527, 1135, 1465
HpaII CCGG 1 cut(s) 993
HphI GGTGA 4 cut(s) 316, 734, 1345, 1441
Hpy166II GTNNAC 3 cut(s) 103, 174, 631
Hpy188I TCNGA 4 cut(s) 204, 648, 818, 1198
Hpy188III TCNNGA 1 cut(s) 1139
Hpy8I GTNNAC 3 cut(s) 103, 174, 631
HpyAV CCTTC 5 cut(s) 508, 925, 1091, 1241, 1404
HpyCH4III ACNGT 2 cut(s) 493, 628
HpyCH4V TGCA 7 cut(s) 13, 271, 299, 752, 1072, 1230, 1405
HpyF10VI GCNNNNNNNGC 2 cut(s) 1015, 1262
HpyF3I CTNAG 5 cut(s) 138, 177, 647, 1195, 1238
Hsp92II CATG 8 cut(s) 17, 76, 247, 268, 902, 940, 1276, 1429
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 199, 807, 1345
LmnI GCTCC 5 cut(s) 90, 135, 622, 994, 1396
Lsp1109I GCAGC 3 cut(s) 42, 283, 983
LweI GCATC 2 cut(s) 304, 739
MaeI CTAG 1 cut(s) 927
MaeIII GTNAC 5 cut(s) 46, 322, 722, 1310, 1333
MalI GATC 3 cut(s) 201, 809, 1347
MboI GATC 3 cut(s) 199, 807, 1345
MboII GAAGA 4 cut(s) 173, 448, 817, 1215
MflI RGATCY 1 cut(s) 1345
MhlI GDGCHC 1 cut(s) 498
MlsI TGGCCA 2 cut(s) 251, 832
MluCI AATT 7 cut(s) 207, 234, 259, 680, 1049, 1367, 1437
MluNI TGGCCA 2 cut(s) 251, 832
MlyI GAGTC 3 cut(s) 108, 357, 521
MmeI TCCRAC 2 cut(s) 68, 796
Mox20I TGGCCA 2 cut(s) 251, 832
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 2 cut(s) 251, 832
MseI TTAA 5 cut(s) 413, 570, 879, 894, 1269
MslI CAYNNNNRTG 2 cut(s) 740, 1430
Msp20I TGGCCA 2 cut(s) 251, 832
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 3 cut(s) 446, 993, 1244
Mva1269I GAATGC 2 cut(s) 894, 1258
MvaI CCWGG 2 cut(s) 446, 1244
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 1015, 1262
NciI CCSGG 1 cut(s) 993
NdeII GATC 3 cut(s) 199, 807, 1345
NlaIII CATG 8 cut(s) 17, 76, 247, 268, 902, 940, 1276, 1429
NlaIV GGNNCC 3 cut(s) 406, 618, 794
NmuCI GTSAC 5 cut(s) 46, 322, 722, 1310, 1333
NspI RCATGY 2 cut(s) 902, 1276
NspV TTCGAA 1 cut(s) 678
OliI CACNNNNGTG 1 cut(s) 740
PciI ACATGT 1 cut(s) 1272
PctI GAATGC 2 cut(s) 894, 1258
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 1135, 1465
PflMI CCANNNNNTGG 2 cut(s) 839, 1122
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 3 cut(s) 57, 298, 998
PleI GAGTC 3 cut(s) 107, 356, 521
PpsI GAGTC 3 cut(s) 107, 356, 521
PscI ACATGT 1 cut(s) 1272
Psp6I CCWGG 2 cut(s) 444, 1242
PspEI GGTNACC 2 cut(s) 722, 1333
PspFI CCCAGC 2 cut(s) 464, 788
PspGI CCWGG 2 cut(s) 444, 1242
PspN4I GGNNCC 3 cut(s) 406, 618, 794
PspPI GGNCC 2 cut(s) 76, 1305
PsuI RGATCY 1 cut(s) 1345
RsaI GTAC 2 cut(s) 1046, 1204
RsaNI GTAC 2 cut(s) 1045, 1203
RseI CAYNNNNRTG 2 cut(s) 740, 1430
SaqAI TTAA 5 cut(s) 413, 570, 879, 894, 1269
SatI GCNGC 3 cut(s) 56, 297, 997
Sau3AI GATC 3 cut(s) 199, 807, 1345
Sau96I GGNCC 2 cut(s) 76, 1305
SchI GAGTC 3 cut(s) 108, 357, 521
ScrFI CCNGG 3 cut(s) 446, 993, 1244
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 2 cut(s) 304, 739
SfcI CTRYAG 1 cut(s) 1472
SfuI TTCGAA 1 cut(s) 678
SinI GGWCC 1 cut(s) 1305
SmiMI CAYNNNNRTG 2 cut(s) 740, 1430
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 7 cut(s) 207, 234, 259, 680, 1049, 1367, 1437
SsiI CCGC 1 cut(s) 460
SspMI CTAG 1 cut(s) 927
StyD4I CCNGG 3 cut(s) 444, 991, 1242
StyI CCWWGG 1 cut(s) 1209
TaaI ACNGT 2 cut(s) 493, 628
TaqI TCGA 4 cut(s) 312, 678, 966, 1023
TaqII GACCGA 1 cut(s) 1352
TasI AATT 7 cut(s) 207, 234, 259, 680, 1049, 1367, 1437
TatI WGTACW 1 cut(s) 1202
TfiI GAWTC 2 cut(s) 1135, 1465
Tru1I TTAA 5 cut(s) 413, 570, 879, 894, 1269
Tru9I TTAA 5 cut(s) 413, 570, 879, 894, 1269
TscAI CASTG 3 cut(s) 498, 1074, 1380
TseFI GTSAC 5 cut(s) 46, 322, 722, 1310, 1333
TseI GCWGC 3 cut(s) 55, 296, 996
Tsp45I GTSAC 5 cut(s) 46, 322, 722, 1310, 1333
TspDTI ATGAA 8 cut(s) 30, 61, 253, 393, 818, 984, 1386, 1448
TspRI CASTG 3 cut(s) 498, 1074, 1380
Van91I CCANNNNNTGG 2 cut(s) 839, 1122
VpaK11BI GGWCC 1 cut(s) 1305
XapI RAATTY 2 cut(s) 207, 680
XceI RCATGY 2 cut(s) 902, 1276
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.