Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010818

Physical Location & Seq

Genomic Coordinates Forward (+)

8837542 .. 8839702

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCGGCAAGGCATGGGCAATCGTCGTATCGAGATCGGAGTGACGAATTCTTCAAAATTGTGGAGACTCTAAGGAGATCGATTGCTCCGGCTCCGGCGGCGAATAATGTGCCGTATGGTAATAATCGGAACGATGGTGCGAGAAGAGAGGATCTTATCAACAAATCCGAGTTCAACAAGAGAGCTTCTCATATTGGTTTAGCTATTAATCAAACGTCGCAGAAGCTATCGAAGCTTGCGAAACTTGCAAAGAGGACATCAGTGTTTGATGATCCTACTCAGGAGATACAAGAGCTGACGGTAGTCATCAAGCAAGAGATCTCTGCTCTAAATTCTGCTCTGGTCGACCTTCAATTGTTCCGCAGTTCTCAGAATGATGAAGGGAATAACTCTAGAGACAGGGACAAAAGTACTCACTCAGCAACTGTTGTTGACGATCTAAAGTATCGTTTGATGGATACTACCAAAGAGTTTAAGGATGTTCTTACCATGAGAACCGAGAATATGAAGGTCCATGAAAGTAGAAGGCAACTCTTCTCTTCAAATGCTTCAAAAGAATCAACAAACCCATTCGTTCGCCAGCGTCCTTTGGCTGCTAAGGCTGCTGCTAGTGAATCTGTTCCTCTTCCATGGGCAAATGGGTCTTCTTCATCTTCATCTCAGTTAGTCCCATGGAAGCCGGGAGAGGGAGAATCTTCACCATTGTTGCAGCAGAGTCAACAACAACAGCAACAGCAACAGCAACAAATGGTCCCATTGCAAGACACATATATGCAGGGTCGAGCAGAAGCTCTACACACCGTTGAATCAACAATCCATGAGCTAAGCAGTATCTTCACACAACTAGCAACCATGGTTTCTCAACAAGGGGAAATTGCAATCAGGATCGATCAAAACATGGAAGATACATTAGCAAATGTGGAAGGCGCACAGAGCCAACTGGCCAGGTATCTCAACAGTATATCATCAAACCGATGGCTAATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGATTTTCCTCTTCTTCGTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

347

Amino Acids

39.12

Weight (kDa)

8.69

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	291 - 343	1e-16	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24350 AT3G24350
fragaria_vesca	FvH4_2g30200
malus_domestica	MD15G1114700.v1.1 MD15G1114800.v1.1 MD15G1190200.v1.1
prunus_persica	Prupe.1G466200_v2.0.a1 Prupe.1G466200_v2.0.a1 Prupe.7G226900_v2.0.a1
pyrus_communis	pycom15g10340
rosa_chinensis	RchiOBHm_Chr6g0312681
rosa_laevigata	RLG00000010304
rosa_multiflora	Rmu_sc0002859.1_g000001 Rmu_ssc0000412.1_g000010
rosa_roxburghii	Rroxscaffold_7G00156570
rosa_samantha	Rh6AG515700 Rh6BG527200 Rh6CG532100 Rh6DG518100
rosa_wichuraiana	Rw6G044810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	2 cut(s)	98, 361
AclWI	GGATC	3 cut(s)	159, 266, 893
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	2 cut(s)	47, 331
AfaI	GTAC	2 cut(s)	412, 1002
AfiI	CCNNNNNNNGG	1 cut(s)	686
AgsI	TTSAA	6 cut(s)	55, 175, 353, 543, 552, 806
AjnI	CCWGG	1 cut(s)	944
AluBI	AGCT	7 cut(s)	185, 203, 226, 235, 295, 791, 823
AluI	AGCT	7 cut(s)	185, 203, 226, 235, 295, 791, 823
Alw26I	GTCTC	2 cut(s)	59, 390
AlwI	GGATC	3 cut(s)	159, 266, 893
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	942
ApeKI	GCWGC	4 cut(s)	593, 602, 605, 709
ApoI	RAATTY	2 cut(s)	47, 331
AseI	ATTAAT	1 cut(s)	207
Asp700I	GAANNNNTTC	2 cut(s)	618, 992
AspLEI	GCGC	1 cut(s)	929
AspS9I	GGNCC	2 cut(s)	511, 751
AsuC2I	CCSGG	1 cut(s)	681
AsuHPI	GGTGA	1 cut(s)	690
AvaII	GGWCC	2 cut(s)	511, 751
BalI	TGGCCA	1 cut(s)	944
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	4 cut(s)	580, 589, 592, 721
BccI	CCATC	3 cut(s)	128, 448, 969
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	946
BciVI	GTATCC	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	681
BcoDI	GTCTC	2 cut(s)	59, 390
BfaI	CTAG	3 cut(s)	393, 609, 845
BfuI	GTATCC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	5 cut(s)	99, 594, 603, 606, 710
BlpI	GCTNAGC	1 cut(s)	824
BlsI	GCNGC	5 cut(s)	100, 595, 604, 607, 711
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	2 cut(s)	681, 946
Bme18I	GGWCC	2 cut(s)	511, 751
BmgT120I	GGNCC	2 cut(s)	511, 751
BmiI	GGNNCC	2 cut(s)	93, 753
BmrFI	CCNGG	2 cut(s)	681, 946
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	636
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	681
Bsa29I	ATCGAT	2 cut(s)	80, 888
BsaJI	CCNNGG	3 cut(s)	629, 671, 852
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	945
Bse3DI	GCAATG	2 cut(s)	755, 1005
BseBI	CCWGG	1 cut(s)	946
BseCI	ATCGAT	2 cut(s)	80, 888
BseDI	CCNNGG	3 cut(s)	629, 671, 852
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMI	GCAATG	2 cut(s)	755, 1005
BseMII	CTCAG	4 cut(s)	293, 383, 432, 674
BseNI	ACTGG	1 cut(s)	945
BseXI	GCAGC	4 cut(s)	580, 589, 592, 721
BshFI	GGCC	1 cut(s)	944
BshVI	ATCGAT	2 cut(s)	80, 888
BsiSI	CCGG	3 cut(s)	89, 95, 680
BslFI	GGGAC	3 cut(s)	416, 653, 737
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	2 cut(s)	59, 390
BsmFI	GGGAC	3 cut(s)	416, 653, 737
BsnI	GGCC	1 cut(s)	944
Bsp143I	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
Bsp1720I	GCTNAGC	1 cut(s)	824
Bsp19I	CCATGG	3 cut(s)	629, 671, 852
BspACI	CCGC	2 cut(s)	98, 361
BspANI	GGCC	1 cut(s)	944
BspCNI	CTCAG	4 cut(s)	292, 382, 431, 673
BspDI	ATCGAT	2 cut(s)	80, 888
BspHI	TCATGA	1 cut(s)	1017
BspLI	GGNNCC	2 cut(s)	93, 753
BspPI	GGATC	3 cut(s)	159, 266, 893
BsrDI	GCAATG	2 cut(s)	755, 1005
BsrI	ACTGG	1 cut(s)	945
BssECI	CCNNGG	3 cut(s)	629, 671, 852
BssMI	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
BssT1I	CCWWGG	3 cut(s)	629, 671, 852
Bst2UI	CCWGG	1 cut(s)	946
Bst4CI	ACNGT	4 cut(s)	301, 427, 802, 959
Bst6I	CTCTTC	5 cut(s)	139, 539, 544, 630, 1034
BstC8I	GCNNGC	2 cut(s)	237, 581
BstDEI	CTNAG	7 cut(s)	71, 279, 369, 418, 597, 660, 824
BstDSI	CCRYGG	3 cut(s)	629, 671, 852
BstF5I	GGATG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	929
BstKTI	GATC	8 cut(s)	37, 80, 154, 274, 321, 439, 888, 892
BstMAI	GTCTC	2 cut(s)	59, 390
BstMBI	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 232, 245, 599, 602, 933
BstNI	CCWGG	1 cut(s)	946
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	679, 944
BstV1I	GCAGC	4 cut(s)	580, 589, 592, 721
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	2 cut(s)	151, 318
BstYI	RGATCY	2 cut(s)	151, 318
Bsu15I	ATCGAT	2 cut(s)	80, 888
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	944
BsuTUI	ATCGAT	2 cut(s)	80, 888
BtgI	CCRYGG	3 cut(s)	629, 671, 852
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	237, 581
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	1017
CfoI	GCGC	1 cut(s)	929
Cfr13I	GGNCC	2 cut(s)	511, 751
ClaI	ATCGAT	2 cut(s)	80, 888
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	411, 1001
CviAII	CATG	9 cut(s)	14, 490, 515, 630, 672, 818, 853, 898, 1018
CviQI	GTAC	2 cut(s)	411, 1001
DdeI	CTNAG	7 cut(s)	71, 279, 369, 418, 597, 660, 824
DpnI	GATC	8 cut(s)	36, 79, 153, 273, 320, 438, 887, 891
DpnII	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	5 cut(s)	139, 539, 544, 630, 1034
EarI	CTCTTC	5 cut(s)	139, 539, 544, 630, 1034
Eco130I	CCWWGG	3 cut(s)	629, 671, 852
Eco47I	GGWCC	2 cut(s)	511, 751
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	944
EcoT14I	CCWWGG	3 cut(s)	629, 671, 852
ErhI	CCWWGG	3 cut(s)	629, 671, 852
FaeI	CATG	9 cut(s)	17, 493, 518, 633, 675, 821, 856, 901, 1021
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FaqI	GGGAC	3 cut(s)	416, 653, 737
FatI	CATG	9 cut(s)	13, 489, 514, 629, 671, 817, 852, 897, 1017
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	99, 594, 603, 606, 710
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	5 cut(s)	99, 594, 603, 606, 710
FspBI	CTAG	3 cut(s)	393, 609, 845
GlaI	GCGC	1 cut(s)	928
GluI	GCNGC	5 cut(s)	99, 594, 603, 606, 710
HaeIII	GGCC	1 cut(s)	944
HapII	CCGG	3 cut(s)	89, 95, 680
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	929
Hin1II	CATG	9 cut(s)	17, 493, 518, 633, 675, 821, 856, 901, 1021
Hin6I	GCGC	1 cut(s)	927
HinP1I	GCGC	1 cut(s)	927
HincII	GTYRAC	3 cut(s)	346, 433, 719
HindII	GTYRAC	3 cut(s)	346, 433, 719
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	6 cut(s)	67, 557, 614, 692, 715, 806
HpaII	CCGG	3 cut(s)	89, 95, 680
HphI	GGTGA	1 cut(s)	690
Hpy166II	GTNNAC	3 cut(s)	346, 433, 719
Hpy188I	TCNGA	4 cut(s)	39, 129, 169, 372
Hpy188III	TCNNGA	5 cut(s)	32, 281, 393, 883, 1018
Hpy8I	GTNNAC	3 cut(s)	346, 433, 719
Hpy99I	CGWCG	2 cut(s)	28, 220
HpyAV	CCTTC	5 cut(s)	359, 374, 502, 519, 917
HpyCH4III	ACNGT	4 cut(s)	301, 427, 802, 959
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	6 cut(s)	248, 709, 760, 775, 878, 1010
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 232, 245, 599, 602, 933
HpyF3I	CTNAG	7 cut(s)	71, 279, 369, 418, 597, 660, 824
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	9 cut(s)	17, 493, 518, 633, 675, 821, 856, 901, 1021
HspAI	GCGC	1 cut(s)	927
Kzo9I	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
LmnI	GCTCC	2 cut(s)	91, 97
Lsp1109I	GCAGC	4 cut(s)	580, 589, 592, 721
MaeI	CTAG	3 cut(s)	393, 609, 845
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	8 cut(s)	36, 79, 153, 273, 320, 438, 887, 891
MboI	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	2 cut(s)	151, 318
MlsI	TGGCCA	1 cut(s)	944
MluCI	AATT	5 cut(s)	47, 57, 331, 353, 873
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	2 cut(s)	61, 724
MnlI	CCTC	5 cut(s)	142, 246, 633, 679, 1037
Mox20I	TGGCCA	1 cut(s)	944
MroXI	GAANNNNTTC	2 cut(s)	618, 992
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	2 cut(s)	207, 474
MslI	CAYNNNNRTG	1 cut(s)	770
Msp20I	TGGCCA	1 cut(s)	944
MspI	CCGG	3 cut(s)	89, 95, 680
MspR9I	CCNGG	2 cut(s)	681, 946
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	946
MwoI	GCNNNNNNNGC	6 cut(s)	98, 232, 245, 599, 602, 933
NciI	CCSGG	1 cut(s)	681
NcoI	CCATGG	3 cut(s)	629, 671, 852
NdeII	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
NlaIII	CATG	9 cut(s)	17, 493, 518, 633, 675, 821, 856, 901, 1021
NlaIV	GGNNCC	2 cut(s)	93, 753
NmuCI	GTSAC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	1017
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdmI	GAANNNNTTC	2 cut(s)	618, 992
PfeI	GAWTC	4 cut(s)	557, 614, 692, 806
PkrI	GCNGC	5 cut(s)	100, 595, 604, 607, 711
PleI	GAGTC	2 cut(s)	61, 723
PpsI	GAGTC	2 cut(s)	61, 723
PshAI	GACNNNNGTC	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	944
PspGI	CCWGG	1 cut(s)	944
PspN4I	GGNNCC	2 cut(s)	93, 753
PspPI	GGNCC	2 cut(s)	511, 751
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	151, 318
RsaI	GTAC	2 cut(s)	412, 1002
RsaNI	GTAC	2 cut(s)	411, 1001
RseI	CAYNNNNRTG	1 cut(s)	770
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	207, 474
SatI	GCNGC	5 cut(s)	99, 594, 603, 606, 710
Sau3AI	GATC	8 cut(s)	34, 77, 151, 271, 318, 436, 885, 889
Sau96I	GGNCC	2 cut(s)	511, 751
ScaI	AGTACT	1 cut(s)	412
SchI	GAGTC	2 cut(s)	61, 724
ScrFI	CCNGG	2 cut(s)	681, 946
SinI	GGWCC	2 cut(s)	511, 751
SmiMI	CAYNNNNRTG	1 cut(s)	770
Sse9I	AATT	5 cut(s)	47, 57, 331, 353, 873
SsiI	CCGC	2 cut(s)	98, 361
SspMI	CTAG	3 cut(s)	393, 609, 845
StyD4I	CCNGG	2 cut(s)	679, 944
StyI	CCWWGG	3 cut(s)	629, 671, 852
TaaI	ACNGT	4 cut(s)	301, 427, 802, 959
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	6 cut(s)	31, 80, 230, 345, 781, 888
TasI	AATT	5 cut(s)	47, 57, 331, 353, 873
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	4 cut(s)	557, 614, 692, 806
Tru1I	TTAA	2 cut(s)	207, 474
Tru9I	TTAA	2 cut(s)	207, 474
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	4 cut(s)	593, 602, 605, 709
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	6 cut(s)	393, 521, 531, 639, 645, 1001
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	511, 751
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	2 cut(s)	47, 331
XbaI	TCTAGA	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	618, 992
XspI	CTAG	3 cut(s)	393, 609, 845
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.