Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010818

Physical Location & Seq

Genomic Coordinates Reverse (-)

23354770 .. 23358574

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCACTCCAAGGGGACACAATCGTCTATTCGCGATCGGACGCATGAGTTTCAGAGTGTGGCAGAGAGGCTAAAGAAGTCATTCTCGTCGGCGGCGGCGCCAGGGCCGTCGCAGAATGGGCCGAGTAGAGGATCGAAATGGCAGGAAAATCAAGCGGCGGTGTCGATGCGCTCCGAGTTTAATCAGAGAGCCGCCAGAATTGGGAAAGGGATACACTCGACGTCGCAGAAGCTCGAAAAGCTGACAAAATTGGCGAAGAGGACATCTGTTTTTGATGATCCTACAAGGGAAATTCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACTTCACTCAACTCTGCAGTGGTAGACCTTCAGCTCCTATCTCACTCCAGAAATGAAAGTGGGAATATTTCTAGTGACACGACTAGTCATTCTACCACAGTTGTCGATGACCTGAAAAATCGGCTTATGAGCACTACAAAAGATTTCAAAGAAGTCCTCACCATGCGAACCGAGAATTTGAAGGTGCATGAGAATAGAAGACAATTGTTTTCGTCTAGCGCCACCAAGGAATCCACAAATCCTTTTGTTCGGCAGCGGCCACTGGCTGCCAGGTCAGCTGCTAGTTCTTCAAGTGCCTCTCCTCCTCCATGGGTTAATGGATCAGCATCTTCATCGCAGTTGTTCCCAAAGAAGGATATAGATGGAGATAGTCAACCATTGCTCCAGCAACAGCAACAGCATCAACAGCAACAGCAACAACAGGAGATGGTTCCGTATCAAGACAGTTTCATGCAGAGTAGAGCTGAAGCTTTGCAAAATGTTGAGTCCACCATTCATGAGCTGAGTAATATTTTCAACCAGCTGGCGACATTGGTTTCTGAGCAAGGGGAAGTTGCCATAAGGATTGATGAGAACATGGAAGACACATTGGCGAATGTAGAGGGTGCACAAGGCCAACTGCTCAAGTATCTGAGCAGCATATCATCAAATAGGTGGCTGATGATCAAGATATTCTTTATACTAATTTTTTTCCTCATGGTTTTCCTATTTTTTGTGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

350

Amino Acids

39.07

Weight (kDa)

9.02

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin-5_N	PF11416	8 - 26	1.1e-06	Syntaxin-5 N-terminal, Sly1p-binding domain
SNARE	PF05739	294 - 345	8e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24350 AT3G24350
fragaria_vesca	FvH4_2g30200
malus_domestica	MD15G1114700.v1.1 MD15G1114800.v1.1 MD15G1190200.v1.1
prunus_persica	Prupe.1G466200_v2.0.a1 Prupe.1G466200_v2.0.a1 Prupe.7G226900_v2.0.a1
pyrus_communis	pycom15g10340
rosa_chinensis	RchiOBHm_Chr6g0312681
rosa_laevigata	RLG00000010304
rosa_multiflora	Rmu_sc0002859.1_g000001 Rmu_ssc0000412.1_g000010
rosa_roxburghii	Rroxscaffold_7G00156570
rosa_samantha	Rh6AG515700 Rh6BG527200 Rh6CG532100 Rh6DG518100
rosa_wichuraiana	Rw6G044810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AatII	GACGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	33
AciI	CCGC	6 cut(s)	92, 95, 155, 158, 192, 583
AclWI	GGATC	3 cut(s)	139, 272, 655
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	291, 502
AcuI	CTGAAG	2 cut(s)	341, 813
AcyI	GRCGYC	2 cut(s)	98, 221
AfiI	CCNNNNNNNGG	3 cut(s)	128, 201, 679
AgsI	TTSAA	4 cut(s)	475, 508, 618, 844
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	2 cut(s)	100, 596
AluBI	AGCT	9 cut(s)	232, 241, 301, 361, 605, 791, 797, 829, 850
AluI	AGCT	9 cut(s)	232, 241, 301, 361, 605, 791, 797, 829, 850
Alw21I	GWGCWC	2 cut(s)	461, 937
Alw44I	GTGCAC	1 cut(s)	933
AlwI	GGATC	3 cut(s)	139, 272, 655
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	4 cut(s)	104, 119, 584, 940
ApaLI	GTGCAC	1 cut(s)	933
ApeKI	GCWGC	4 cut(s)	580, 593, 605, 963
ApoI	RAATTY	2 cut(s)	291, 502
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	3 cut(s)	100, 171, 548
AspS9I	GGNCC	2 cut(s)	104, 119
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	937
BanI	GGYRCC	1 cut(s)	97
BbsI	GAAGAC	2 cut(s)	532, 915
Bbv12I	GWGCWC	2 cut(s)	461, 937
BbvI	GCAGC	4 cut(s)	580, 592, 592, 975
BccI	CCATC	2 cut(s)	683, 748
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	642, 676
BciT130I	CCWGG	2 cut(s)	102, 598
BciVI	GTATCC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	990
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	4 cut(s)	399, 411, 543, 609
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	2 cut(s)	101, 549
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	9 cut(s)	93, 96, 156, 192, 581, 584, 594, 606, 964
BlsI	GCNGC	9 cut(s)	94, 97, 157, 193, 582, 585, 595, 607, 965
Bme1390I	CCNGG	2 cut(s)	102, 598
BmgT120I	GGNCC	2 cut(s)	104, 119
BmiI	GGNNCC	2 cut(s)	99, 759
BmrFI	CCNGG	2 cut(s)	102, 598
BmsI	GCATC	3 cut(s)	156, 662, 736
BpiI	GAAGAC	2 cut(s)	532, 915
BpmI	CTGGAG	2 cut(s)	358, 695
BpuEI	CTTGAG	1 cut(s)	935
BsaBI	GATNNNNATC	1 cut(s)	652
BsaHI	GRCGYC	2 cut(s)	98, 221
BsaJI	CCNNGG	4 cut(s)	9, 101, 552, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 201, 679
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	704
Bse8I	GATNNNNATC	1 cut(s)	652
BseBI	CCWGG	2 cut(s)	102, 598
BseDI	CCNNGG	4 cut(s)	9, 101, 552, 635
BseJI	GATNNNNATC	1 cut(s)	652
BseLI	CCNNNNNNNGG	3 cut(s)	128, 201, 679
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	3 cut(s)	821, 858, 950
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	2 cut(s)	618, 621
BseSI	GKGCMC	1 cut(s)	937
BseXI	GCAGC	4 cut(s)	580, 592, 592, 975
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	106, 121, 586, 942
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	461, 937
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	128, 201, 679
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	4 cut(s)	106, 121, 586, 942
Bsp1286I	GDGCHC	2 cut(s)	461, 937
Bsp143I	GATC	5 cut(s)	34, 131, 277, 647, 990
Bsp19I	CCATGG	1 cut(s)	635
Bsp68I	TCGCGA	1 cut(s)	33
BspACI	CCGC	6 cut(s)	92, 95, 155, 158, 192, 583
BspANI	GGCC	4 cut(s)	106, 121, 586, 942
BspCNI	CTCAG	3 cut(s)	822, 859, 951
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	2 cut(s)	99, 759
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	3 cut(s)	139, 272, 655
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	4 cut(s)	9, 101, 552, 635
BssMI	GATC	5 cut(s)	34, 131, 277, 647, 990
BssNI	GRCGYC	2 cut(s)	98, 221
BssT1I	CCWWGG	3 cut(s)	9, 552, 635
Bst2UI	CCWGG	2 cut(s)	102, 598
Bst4CI	ACNGT	2 cut(s)	427, 773
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	2 cut(s)	98, 221
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	3 cut(s)	830, 867, 959
BstDSI	CCRYGG	1 cut(s)	635
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	2 cut(s)	101, 549
BstHHI	GCGC	3 cut(s)	100, 171, 548
BstKTI	GATC	5 cut(s)	37, 134, 280, 650, 993
BstMBI	GATC	5 cut(s)	34, 131, 277, 647, 990
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 238, 602, 733
BstNI	CCWGG	2 cut(s)	102, 598
BstSCI	CCNGG	2 cut(s)	100, 596
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	937
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	4 cut(s)	580, 592, 592, 975
BstV2I	GAAGAC	2 cut(s)	532, 915
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	4 cut(s)	106, 121, 586, 942
BtgI	CCRYGG	1 cut(s)	635
BtgZI	GCGATG	1 cut(s)	645
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 587
BtuMI	TCGCGA	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	852
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	3 cut(s)	100, 171, 548
Cfr13I	GGNCC	2 cut(s)	104, 119
CseI	GACGC	1 cut(s)	49
CviAII	CATG	8 cut(s)	44, 490, 515, 636, 778, 824, 904, 1024
DdeI	CTNAG	3 cut(s)	830, 867, 959
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	5 cut(s)	36, 133, 279, 649, 992
DpnII	GATC	5 cut(s)	34, 131, 277, 647, 990
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	3 cut(s)	9, 552, 635
Eco57I	CTGAAG	2 cut(s)	341, 813
EcoRII	CCWGG	2 cut(s)	100, 596
EcoT14I	CCWWGG	3 cut(s)	9, 552, 635
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
ErhI	CCWWGG	3 cut(s)	9, 552, 635
FaeI	CATG	8 cut(s)	47, 493, 518, 639, 781, 827, 907, 1027
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	8 cut(s)	43, 489, 514, 635, 777, 823, 903, 1023
FbaI	TGATCA	1 cut(s)	990
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	9 cut(s)	93, 96, 156, 192, 581, 584, 594, 606, 964
Fsp4HI	GCNGC	9 cut(s)	93, 96, 156, 192, 581, 584, 594, 606, 964
FspBI	CTAG	4 cut(s)	399, 411, 543, 609
GlaI	GCGC	3 cut(s)	99, 170, 547
GluI	GCNGC	9 cut(s)	93, 96, 156, 192, 581, 584, 594, 606, 964
GsuI	CTGGAG	2 cut(s)	358, 695
HaeII	RGCGCY	2 cut(s)	101, 549
HaeIII	GGCC	4 cut(s)	106, 121, 586, 942
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	3 cut(s)	100, 171, 548
Hin1I	GRCGYC	2 cut(s)	98, 221
Hin1II	CATG	8 cut(s)	47, 493, 518, 639, 781, 827, 907, 1027
Hin6I	GCGC	3 cut(s)	98, 169, 546
HinP1I	GCGC	3 cut(s)	98, 169, 546
HincII	GTYRAC	1 cut(s)	701
HindII	GTYRAC	1 cut(s)	701
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	2 cut(s)	557, 812
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	4 cut(s)	352, 701, 816, 935
Hpy188I	TCNGA	6 cut(s)	39, 54, 175, 186, 868, 960
Hpy188III	TCNNGA	6 cut(s)	32, 296, 375, 767, 824, 994
Hpy8I	GTNNAC	4 cut(s)	352, 701, 816, 935
Hpy99I	CGWCG	4 cut(s)	91, 112, 223, 226
HpyAV	CCTTC	3 cut(s)	365, 502, 673
HpyCH4III	ACNGT	2 cut(s)	427, 773
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	6 cut(s)	4, 344, 514, 781, 802, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 238, 602, 733
HpyF3I	CTNAG	3 cut(s)	830, 867, 959
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	2 cut(s)	98, 221
Hsp92II	CATG	8 cut(s)	47, 493, 518, 639, 781, 827, 907, 1027
HspAI	GCGC	3 cut(s)	98, 169, 546
KasI	GGCGCC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	990
Kzo9I	GATC	5 cut(s)	34, 131, 277, 647, 990
LmnI	GCTCC	4 cut(s)	176, 298, 366, 714
Lsp1109I	GCAGC	4 cut(s)	580, 592, 592, 975
LweI	GCATC	3 cut(s)	156, 662, 736
MaeI	CTAG	4 cut(s)	399, 411, 543, 609
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	5 cut(s)	36, 133, 279, 649, 992
MboI	GATC	5 cut(s)	34, 131, 277, 647, 990
MboII	GAAGA	5 cut(s)	268, 537, 606, 648, 920
MfeI	CAATTG	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	461, 937
MluCI	AATT	6 cut(s)	198, 248, 291, 502, 530, 1011
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	821
MnlI	CCTC	9 cut(s)	60, 122, 252, 494, 634, 639, 642, 922, 1031
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	180, 642
MspA1I	CMGCKG	3 cut(s)	583, 605, 850
MspR9I	CCNGG	2 cut(s)	102, 598
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	2 cut(s)	102, 598
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	118, 238, 602, 733
NarI	GGCGCC	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	5 cut(s)	34, 131, 277, 647, 990
NlaIII	CATG	8 cut(s)	47, 493, 518, 639, 781, 827, 907, 1027
NlaIV	GGNNCC	2 cut(s)	99, 759
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	401
NruI	TCGCGA	1 cut(s)	33
PagI	TCATGA	1 cut(s)	823
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	9 cut(s)	94, 97, 157, 193, 582, 585, 595, 607, 965
Ple19I	CGATCG	1 cut(s)	37
PleI	GAGTC	1 cut(s)	820
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	820
Psp6I	CCWGG	2 cut(s)	100, 596
PspGI	CCWGG	2 cut(s)	100, 596
PspN4I	GGNNCC	2 cut(s)	99, 759
PspPI	GGNCC	2 cut(s)	104, 119
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	37
PvuII	CAGCTG	2 cut(s)	605, 850
RruI	TCGCGA	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	180, 642
SatI	GCNGC	9 cut(s)	93, 96, 156, 192, 581, 584, 594, 606, 964
Sau3AI	GATC	5 cut(s)	34, 131, 277, 647, 990
Sau96I	GGNCC	2 cut(s)	104, 119
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	2 cut(s)	102, 598
SduI	GDGCHC	2 cut(s)	461, 937
SfaNI	GCATC	3 cut(s)	156, 662, 736
SfcI	CTRYAG	1 cut(s)	342
SfoI	GGCGCC	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	6 cut(s)	198, 248, 291, 502, 530, 1011
SsiI	CCGC	6 cut(s)	92, 95, 155, 158, 192, 583
SspDI	GGCGCC	1 cut(s)	97
SspI	AATATT	2 cut(s)	394, 838
SspMI	CTAG	4 cut(s)	399, 411, 543, 609
StyD4I	CCNGG	2 cut(s)	100, 596
StyI	CCWWGG	3 cut(s)	9, 552, 635
TaaI	ACNGT	2 cut(s)	427, 773
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	5 cut(s)	134, 164, 218, 234, 432
TasI	AATT	6 cut(s)	198, 248, 291, 502, 530, 1011
TauI	GCSGC	5 cut(s)	95, 98, 158, 194, 586
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	180, 642
Tru9I	TTAA	2 cut(s)	180, 642
TscAI	CASTG	2 cut(s)	351, 594
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	4 cut(s)	580, 593, 605, 963
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	4 cut(s)	396, 648, 766, 812
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	2 cut(s)	351, 594
VneI	GTGCAC	1 cut(s)	933
XapI	RAATTY	2 cut(s)	291, 502
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	4 cut(s)	399, 411, 543, 609
ZraI	GACGTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.