Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010818

Physical Location & Seq

Genomic Coordinates Reverse (-)

20070679 .. 20072750

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G226900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCATGGAAAATCGGGGCAATCGTCCTTCCGAGATCGAACGCAGGAGTTTCTGAGCATAACAGAGAGGCATCGAAAGTCCTCCTTCTCGACGCCAGCCAACGATGGCCCAGCATCGAGTAGCAATAGTGGCGCGAAGATCGACGGATCTCGATCTGCGGCTTCGATTCAATCGGAGTTCAACAAAAGGGCCTCCAAGATTGGGCTTGGGATTCACCACACTTCCCGCATGCTCACCAAGCTCGCACAATTGGCAAAAAGGACATCAGTGTTTGATGATCCAGCTCTGGAGATCCAAGAGCTGACATCAGCTATAAAGCAAGATATTACTGGACTTAATTCAGCAGTGATAGATCTGCAGCTGGCCTGCAATTCCCAAAATGAAAGTGGAAACATCTCGAGTGACACCACAAATCATTCAACTACGGTTGTGGATAACCTGAAGAACCGACTAATGAGCACCACGAAAGAGTTTAAAGAAGTGCTCACCATGCGGACAGAGAATTTAAAGGTTCATGAAAATAGGAGGCAATTGTTTTCTTCAAGCACTTCAAAAGAGTCAACAAATCCATTTGTTCGCCAACGTCCAGTTGCTGCCAGATCAGCTGCTAATGCATCGGAAGATCCTCCTCCATGGGCCAATGATTCTGCGTCTTCTTCGTCACAGTTATTTCCTAGGAAGCAGACAGAGATGGAATCTCAGCCATTACTGCAACAGCAGCAACAACAGGTAGAACAACAAGACAGCTATATGCAGAGCCGAGCTGAAGCTCTTCATAACGTGGAGTCAACAATTCATGAGCTGGGTGGCATATTCACACAATTGGCAACCATGGTTTCTCAGCAAGGAGAGCTTGCAATCAGGATTGATGAGAATATGGACGACACACTGGCCAATGTGGAAGGAGCACAAGGGCAACTGGCCAGGTACTTTAACAGTATATCATCCAACCGATGGCTAATGATCAAGATATTCTTTGTACTTATTGTATTTCTTATATTTTTCTTATTTTTTGCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

341

Amino Acids

37.77

Weight (kDa)

6.73

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24350 AT3G24350
fragaria_vesca	FvH4_2g30200
malus_domestica	MD15G1114700.v1.1 MD15G1114800.v1.1 MD15G1190200.v1.1
prunus_persica	Prupe.1G466200_v2.0.a1 Prupe.1G466200_v2.0.a1 Prupe.7G226900_v2.0.a1
pyrus_communis	pycom15g10340
rosa_chinensis	RchiOBHm_Chr6g0312681
rosa_laevigata	RLG00000010304
rosa_multiflora	Rmu_sc0002859.1_g000001 Rmu_ssc0000412.1_g000010
rosa_roxburghii	Rroxscaffold_7G00156570
rosa_samantha	Rh6AG515700 Rh6BG527200 Rh6CG532100 Rh6DG518100
rosa_wichuraiana	Rw6G044810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	954
AccII	CGCG	1 cut(s)	134
AciI	CCGC	4 cut(s)	158, 226, 493, 1016
AclWI	GGATC	4 cut(s)	154, 272, 286, 617
AcoI	YGGCCR	2 cut(s)	891, 921
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	2 cut(s)	461, 786
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	929, 981
AfiI	CCNNNNNNNGG	2 cut(s)	201, 954
AgsI	TTSAA	5 cut(s)	170, 181, 420, 543, 552
AjnI	CCWGG	1 cut(s)	923
Alw21I	GWGCWC	3 cut(s)	461, 486, 910
AlwI	GGATC	4 cut(s)	154, 272, 286, 617
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	6 cut(s)	106, 189, 363, 636, 891, 921
ApeKI	GCWGC	4 cut(s)	358, 593, 605, 718
ApoI	RAATTY	1 cut(s)	502
Asp700I	GAANNNNTTC	1 cut(s)	771
AspA2I	CCTAGG	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	107, 189, 636
AsuHPI	GGTGA	3 cut(s)	206, 226, 478
AvaI	CYCGRG	1 cut(s)	397
AvrII	CCTAGG	1 cut(s)	674
BalI	TGGCCA	2 cut(s)	893, 923
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	3 cut(s)	461, 486, 910
BbvI	GCAGC	4 cut(s)	370, 580, 592, 730
BccI	CCATC	3 cut(s)	98, 685, 948
BciT130I	CCWGG	1 cut(s)	925
BclI	TGATCA	1 cut(s)	963
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	356
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	6 cut(s)	159, 359, 594, 606, 719, 1017
BlnI	CCTAGG	1 cut(s)	674
BlsI	GCNGC	6 cut(s)	160, 360, 595, 607, 720, 1018
Bme1390I	CCNGG	1 cut(s)	925
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	107, 189, 636
BmrFI	CCNGG	1 cut(s)	925
BmsI	GCATC	3 cut(s)	79, 122, 623
BpiI	GAAGAC	1 cut(s)	645
BpmI	CTGGAG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	632, 674, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 954
Bse1I	ACTGG	4 cut(s)	334, 587, 894, 924
Bse8I	GATNNNNATC	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	925
BseDI	CCNNGG	3 cut(s)	632, 674, 831
BseGI	GGATG	1 cut(s)	944
BseJI	GATNNNNATC	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	201, 954
BseMII	CTCAG	3 cut(s)	44, 713, 854
BseNI	ACTGG	4 cut(s)	334, 587, 894, 924
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	4 cut(s)	370, 580, 592, 730
BseYI	CCCAGC	2 cut(s)	109, 802
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	6 cut(s)	108, 191, 365, 638, 893, 923
BsiHKAI	GWGCWC	3 cut(s)	461, 486, 910
BsiHKCI	CYCGRG	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	201, 954
BsnI	GGCC	6 cut(s)	108, 191, 365, 638, 893, 923
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	3 cut(s)	461, 486, 910
Bsp19I	CCATGG	2 cut(s)	632, 831
BspACI	CCGC	4 cut(s)	158, 226, 493, 1016
BspANI	GGCC	6 cut(s)	108, 191, 365, 638, 893, 923
BspCNI	CTCAG	3 cut(s)	45, 712, 853
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	2 cut(s)	514, 796
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	4 cut(s)	154, 272, 286, 617
BspQI	GCTCTTC	1 cut(s)	777
BsrI	ACTGG	4 cut(s)	334, 587, 894, 924
BssECI	CCNNGG	3 cut(s)	632, 674, 831
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	3 cut(s)	632, 674, 831
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	3 cut(s)	427, 666, 938
Bst6I	CTCTTC	1 cut(s)	777
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	6 cut(s)	96, 230, 243, 363, 367, 855
BstDEI	CTNAG	3 cut(s)	53, 699, 840
BstDSI	CCRYGG	2 cut(s)	632, 831
BstF5I	GGATG	1 cut(s)	944
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	9 cut(s)	129, 238, 251, 490, 602, 611, 709, 718, 850
BstNI	CCWGG	1 cut(s)	925
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	923
BstSFI	CTRYAG	1 cut(s)	356
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	370, 580, 592, 730
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	4 cut(s)	146, 291, 352, 622
BstYI	RGATCY	4 cut(s)	146, 291, 352, 622
BsuRI	GGCC	6 cut(s)	108, 191, 365, 638, 893, 923
BtgI	CCRYGG	2 cut(s)	632, 831
BtsCI	GGATG	1 cut(s)	944
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	273, 351, 887
Cac8I	GCNNGC	6 cut(s)	96, 230, 243, 363, 367, 855
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	2 cut(s)	514, 796
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	107, 189, 636
CseI	GACGC	2 cut(s)	100, 639
Csp6I	GTAC	2 cut(s)	928, 980
CviAII	CATG	7 cut(s)	5, 229, 490, 515, 633, 797, 832
CviQI	GTAC	2 cut(s)	928, 980
DdeI	CTNAG	3 cut(s)	53, 699, 840
DraI	TTTAAA	2 cut(s)	475, 507
EaeI	YGGCCR	2 cut(s)	891, 921
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	3 cut(s)	632, 674, 831
Eco57I	CTGAAG	2 cut(s)	461, 786
Eco88I	CYCGRG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	923
EcoT14I	CCWWGG	3 cut(s)	632, 674, 831
EcoT22I	ATGCAT	2 cut(s)	6, 616
ErhI	CCWWGG	3 cut(s)	632, 674, 831
FaeI	CATG	7 cut(s)	8, 232, 493, 518, 636, 800, 835
FalI	AAGNNNNNCTT	6 cut(s)	68, 100, 837, 869, 959, 991
FatI	CATG	7 cut(s)	4, 228, 489, 514, 632, 796, 831
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	963
Fnu4HI	GCNGC	6 cut(s)	159, 359, 594, 606, 719, 1017
FokI	GGATG	1 cut(s)	931
Fsp4HI	GCNGC	6 cut(s)	159, 359, 594, 606, 719, 1017
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	6 cut(s)	159, 359, 594, 606, 719, 1017
GsaI	CCCAGC	2 cut(s)	113, 806
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	6 cut(s)	108, 191, 365, 638, 893, 923
HgaI	GACGC	2 cut(s)	100, 639
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	8, 232, 493, 518, 636, 800, 835
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	2 cut(s)	561, 789
HindII	GTYRAC	2 cut(s)	561, 789
HinfI	GANTC	6 cut(s)	166, 211, 557, 644, 695, 785
HphI	GGTGA	3 cut(s)	206, 226, 478
Hpy166II	GTNNAC	2 cut(s)	561, 789
Hpy188I	TCNGA	4 cut(s)	32, 54, 175, 619
Hpy188III	TCNNGA	8 cut(s)	88, 150, 287, 397, 515, 797, 862, 967
Hpy8I	GTNNAC	2 cut(s)	561, 789
Hpy99I	CGWCG	2 cut(s)	94, 146
HpyAV	CCTTC	3 cut(s)	37, 94, 896
HpyCH4III	ACNGT	3 cut(s)	427, 666, 938
HpyCH4IV	ACGT	2 cut(s)	583, 780
HpyCH4V	TGCA	7 cut(s)	4, 358, 369, 614, 712, 754, 857
HpyF10VI	GCNNNNNNNGC	9 cut(s)	129, 238, 251, 490, 602, 611, 709, 718, 850
HpyF3I	CTNAG	3 cut(s)	53, 699, 840
HpySE526I	ACGT	2 cut(s)	583, 780
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	7 cut(s)	8, 232, 493, 518, 636, 800, 835
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	963
LguI	GCTCTTC	1 cut(s)	777
LmnI	GCTCC	1 cut(s)	905
Lsp1109I	GCAGC	4 cut(s)	370, 580, 592, 730
LweI	GCATC	3 cut(s)	79, 122, 623
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	2 cut(s)	583, 780
MaeIII	GTNAC	2 cut(s)	401, 660
MboII	GAAGA	7 cut(s)	148, 454, 531, 632, 645, 648, 764
MfeI	CAATTG	3 cut(s)	248, 530, 821
MflI	RGATCY	4 cut(s)	146, 291, 352, 622
MhlI	GDGCHC	3 cut(s)	461, 486, 910
MlsI	TGGCCA	2 cut(s)	893, 923
MluCI	AATT	7 cut(s)	248, 337, 370, 502, 530, 792, 821
MluNI	TGGCCA	2 cut(s)	893, 923
MlyI	GAGTC	2 cut(s)	566, 794
MmeI	TCCRAC	1 cut(s)	972
MnlI	CCTC	6 cut(s)	60, 91, 202, 519, 636, 639
Mox20I	TGGCCA	2 cut(s)	893, 923
Mph1103I	ATGCAT	2 cut(s)	6, 616
MroXI	GAANNNNTTC	1 cut(s)	771
MscI	TGGCCA	2 cut(s)	893, 923
MseI	TTAA	4 cut(s)	336, 474, 506, 933
Msp20I	TGGCCA	2 cut(s)	893, 923
MspA1I	CMGCKG	2 cut(s)	361, 605
MspR9I	CCNGG	1 cut(s)	925
MunI	CAATTG	3 cut(s)	248, 530, 821
MvaI	CCWGG	1 cut(s)	925
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	9 cut(s)	129, 238, 251, 490, 602, 611, 709, 718, 850
NcoI	CCATGG	2 cut(s)	632, 831
NlaIII	CATG	7 cut(s)	8, 232, 493, 518, 636, 800, 835
NmeAIII	GCCGAG	1 cut(s)	785
NmuCI	GTSAC	2 cut(s)	401, 660
NsiI	ATGCAT	2 cut(s)	6, 616
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	397
PagI	TCATGA	2 cut(s)	514, 796
PciSI	GCTCTTC	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	166, 211, 644, 695
PflMI	CCANNNNNTGG	1 cut(s)	954
PkrI	GCNGC	6 cut(s)	160, 360, 595, 607, 720, 1018
PleI	GAGTC	2 cut(s)	565, 793
PpsI	GAGTC	2 cut(s)	565, 793
Psp6I	CCWGG	1 cut(s)	923
PspFI	CCCAGC	2 cut(s)	109, 802
PspGI	CCWGG	1 cut(s)	923
PspPI	GGNCC	3 cut(s)	107, 189, 636
PstI	CTGCAG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	4 cut(s)	146, 291, 352, 622
PvuII	CAGCTG	2 cut(s)	361, 605
RsaI	GTAC	2 cut(s)	929, 981
RsaNI	GTAC	2 cut(s)	928, 980
SapI	GCTCTTC	1 cut(s)	777
SaqAI	TTAA	4 cut(s)	336, 474, 506, 933
SatI	GCNGC	6 cut(s)	159, 359, 594, 606, 719, 1017
Sau96I	GGNCC	3 cut(s)	107, 189, 636
SchI	GAGTC	2 cut(s)	566, 794
ScrFI	CCNGG	1 cut(s)	925
SduI	GDGCHC	3 cut(s)	461, 486, 910
SfaNI	GCATC	3 cut(s)	79, 122, 623
SfcI	CTRYAG	1 cut(s)	356
Sfr274I	CTCGAG	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	7 cut(s)	248, 337, 370, 502, 530, 792, 821
SsiI	CCGC	4 cut(s)	158, 226, 493, 1016
SspMI	CTAG	1 cut(s)	675
StyD4I	CCNGG	1 cut(s)	923
StyI	CCWWGG	3 cut(s)	632, 674, 831
TaaI	ACNGT	3 cut(s)	427, 666, 938
TaiI	ACGT	2 cut(s)	586, 783
TaqI	TCGA	8 cut(s)	37, 73, 89, 116, 141, 151, 164, 398
TasI	AATT	7 cut(s)	248, 337, 370, 502, 530, 792, 821
TatI	WGTACW	1 cut(s)	979
TauI	GCSGC	2 cut(s)	161, 1019
TfiI	GAWTC	4 cut(s)	166, 211, 644, 695
Tru1I	TTAA	4 cut(s)	336, 474, 506, 933
Tru9I	TTAA	4 cut(s)	336, 474, 506, 933
TscAI	CASTG	3 cut(s)	273, 351, 894
TseFI	GTSAC	2 cut(s)	401, 660
TseI	GCWGC	4 cut(s)	358, 593, 605, 718
Tsp45I	GTSAC	2 cut(s)	401, 660
TspDTI	ATGAA	5 cut(s)	396, 503, 531, 764, 785
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	273, 351, 894
Van91I	CCANNNNNTGG	1 cut(s)	954
XapI	RAATTY	1 cut(s)	502
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XhoI	CTCGAG	1 cut(s)	397
XmaJI	CCTAGG	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	1 cut(s)	675
Zsp2I	ATGCAT	2 cut(s)	6, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.