RchiOBHm_Chr6g0312681

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
69274608 .. 69278370
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28130

Sequence Viewer

Length: 1050 bp
ATGCATGCCAAGGGGACACAATCGTCTTTTCGGGATCGGACGCAGGAGTTCCACAGTGTAGCAGAGAGGCTAAAGAAGTCATTCTCGTCGGCGCCGGGGCCGGGGCCAGGGCCGTCGCAGAATGGCCCCACTAGTGGATCGAAATTCCAGGAACAACAATCGGCCGTGGCGACTCACTCCGAGTTTAATAAGAGGGCATCCAAAATTGGATTGGGGATACACTCCACGTCGCAGAAGCTTGGAAAGCTGACAAAATTGGCGAAGAGGACTTCTGTTTTTGATGATCCTACAAGGGAAATTCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACCGCACTCAACTCTGCAGTGGTAGACCTTCAGCTCCTATCTCATTCCAGAAATGAAAGTGGGAATATTTCTAGTGACACGACTAGTCATTCAACCACAGTTGTTGACGACCTGAAAAATCGGCTTATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGAACTGAGAATTTGAAGGTTCATGAGAATAGAAGACAATTGTTTTCGTCTAGTGCCTCCAAGGAATCCACAAATCCTTTTGTTCGGCAGCGCCCACTGGCTGCTAGGTCAGCTGCTAGTTCTTCAAGTGCCTCTCCTCCTCCATGGGCTAATGGATCAGCATCTTCCTCGCAGTTGTTCCCAAAGAAGGAGATAGATGGGGAGAGTCAACCATTGCTCCAGCAACAGCATCAGCAGCAACAGCAACAACAGGAGATGGTTCCATATCAAGACAGTTTCATGCAGAGTAGAGCTGAAGCTTTGCAAAATGTTGAGTCCACCATTCATGAGCTGAGTAATATTTTCAACCAGCTGGCGACATTGGTTTCTGAGCAAGGGGAAGTTGCCATCAGGATTGATGAGAACATGGAAGACACATTGGCAAATGTAGAGGGTGCACAAGGGCAACTGCTCAAGTATATGAATAGCATATCATCAAATAGGTGGCTGATGATCAAGATATTCTTTATATTAATTTTTTTCCTCATGGTTTTCCTATTTTTTGTGGCATAA

Protein Analysis

349

Amino Acids

38.8

Weight (kDa)

8.69

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin-5_N PF11416 8 - 26 1e-06 Syntaxin-5 N-terminal, Sly1p-binding domain
SNARE PF05739 294 - 345 2.5e-17 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 357
AciI CCGC 1 cut(s) 336
AclWI GGATC 4 cut(s) 42, 145, 278, 661
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 3 cut(s) 143, 297, 508
AcuI CTGAAG 2 cut(s) 347, 813
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 4 cut(s) 101, 107, 134, 685
AgsI TTSAA 4 cut(s) 426, 514, 624, 844
AhlI ACTAGT 2 cut(s) 131, 416
AjiI CACGTC 1 cut(s) 228
AjnI CCWGG 2 cut(s) 106, 147
AluBI AGCT 9 cut(s) 238, 247, 307, 367, 611, 791, 797, 829, 850
AluI AGCT 9 cut(s) 238, 247, 307, 367, 611, 791, 797, 829, 850
Alw21I GWGCWC 2 cut(s) 467, 937
Alw44I GTGCAC 1 cut(s) 933
AlwI GGATC 4 cut(s) 42, 145, 278, 661
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 5 cut(s) 98, 104, 110, 124, 162
ApaLI GTGCAC 1 cut(s) 933
ApeKI GCWGC 4 cut(s) 586, 599, 611, 733
ApoI RAATTY 3 cut(s) 143, 297, 508
AseI ATTAAT 1 cut(s) 1010
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 94, 591
AspS9I GGNCC 4 cut(s) 98, 104, 110, 125
AsuC2I CCSGG 2 cut(s) 96, 102
AsuHPI GGTGA 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 937
BanI GGYRCC 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 538, 915
Bbv12I GWGCWC 2 cut(s) 467, 937
BbvI GCAGC 4 cut(s) 586, 598, 598, 745
BccI CCATC 3 cut(s) 689, 748, 893
BceAI ACGGC 2 cut(s) 97, 149
BcgI CGANNNNNNTGC 2 cut(s) 648, 682
BciT130I CCWGG 2 cut(s) 108, 149
BciVI GTATCC 1 cut(s) 210
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 2 cut(s) 96, 102
BcuI ACTAGT 2 cut(s) 131, 416
BfaI CTAG 6 cut(s) 132, 405, 417, 549, 603, 615
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 2 cut(s) 95, 592
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 4 cut(s) 587, 600, 612, 734
BlsI GCNGC 4 cut(s) 588, 601, 613, 735
Bme1390I CCNGG 4 cut(s) 96, 102, 108, 149
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 4 cut(s) 98, 104, 110, 125
BmiI GGNNCC 5 cut(s) 93, 99, 105, 127, 759
BmrFI CCNGG 4 cut(s) 96, 102, 108, 149
BmsI GCATC 3 cut(s) 206, 668, 736
BpiI GAAGAC 2 cut(s) 538, 915
BpmI CTGGAG 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 2 cut(s) 96, 102
BsaBI GATNNNNATC 1 cut(s) 658
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 7 cut(s) 9, 95, 101, 107, 165, 558, 641
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 107, 134, 685
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 710
Bse8I GATNNNNATC 1 cut(s) 658
BseBI CCWGG 2 cut(s) 108, 149
BseDI CCNNGG 7 cut(s) 9, 95, 101, 107, 165, 558, 641
BseGI GGATG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 658
BseLI CCNNNNNNNGG 4 cut(s) 101, 107, 134, 685
BseMI GCAATG 1 cut(s) 710
BseMII CTCAG 3 cut(s) 495, 821, 858
BseNI ACTGG 1 cut(s) 600
BseRI GAGGAG 2 cut(s) 624, 627
BseSI GKGCMC 1 cut(s) 937
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 4 cut(s) 586, 598, 598, 745
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 5 cut(s) 100, 106, 112, 126, 164
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 467, 937
BsiSI CCGG 2 cut(s) 95, 101
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 4 cut(s) 101, 107, 134, 685
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 5 cut(s) 100, 106, 112, 126, 164
Bsp1286I GDGCHC 2 cut(s) 467, 937
Bsp143I GATC 5 cut(s) 34, 137, 283, 653, 990
Bsp19I CCATGG 1 cut(s) 641
BspACI CCGC 1 cut(s) 336
BspANI GGCC 5 cut(s) 100, 106, 112, 126, 164
BspCNI CTCAG 3 cut(s) 496, 822, 859
BspHI TCATGA 2 cut(s) 520, 823
BspLI GGNNCC 5 cut(s) 93, 99, 105, 127, 759
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 4 cut(s) 42, 145, 278, 661
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 710
BsrI ACTGG 1 cut(s) 600
BssECI CCNNGG 7 cut(s) 9, 95, 101, 107, 165, 558, 641
BssMI GATC 5 cut(s) 34, 137, 283, 653, 990
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 3 cut(s) 9, 558, 641
Bst2UI CCWGG 2 cut(s) 108, 149
Bst4CI ACNGT 3 cut(s) 56, 433, 773
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 6, 852
BstDEI CTNAG 3 cut(s) 504, 830, 867
BstDSI CCRYGG 2 cut(s) 165, 641
BstF5I GGATG 1 cut(s) 197
BstH2I RGCGCY 2 cut(s) 95, 592
BstHHI GCGC 2 cut(s) 94, 591
BstKTI GATC 5 cut(s) 37, 140, 286, 656, 993
BstMBI GATC 5 cut(s) 34, 137, 283, 653, 990
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 4 cut(s) 244, 608, 733, 739
BstNI CCWGG 2 cut(s) 108, 149
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 4 cut(s) 94, 100, 106, 147
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 937
BstV1I GCAGC 4 cut(s) 586, 598, 598, 745
BstV2I GAAGAC 2 cut(s) 538, 915
BstZI CGGCCG 1 cut(s) 162
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 5 cut(s) 100, 106, 112, 126, 164
BtgI CCRYGG 2 cut(s) 165, 641
BtrI CACGTC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 3 cut(s) 61, 357, 593
Cac8I GCNNGC 2 cut(s) 6, 852
CaiI CAGNNNCTG 1 cut(s) 307
CciI TCATGA 2 cut(s) 520, 823
CfoI GCGC 2 cut(s) 94, 591
Cfr13I GGNCC 4 cut(s) 98, 104, 110, 125
CseI GACGC 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 8 cut(s) 5, 496, 521, 642, 778, 824, 904, 1024
DdeI CTNAG 3 cut(s) 504, 830, 867
DinI GGCGCC 1 cut(s) 93
DpnI GATC 5 cut(s) 36, 139, 285, 655, 992
DpnII GATC 5 cut(s) 34, 137, 283, 653, 990
DraI TTTAAA 1 cut(s) 481
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 3 cut(s) 9, 558, 641
Eco52I CGGCCG 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 347, 813
EcoRII CCWGG 2 cut(s) 106, 147
EcoT14I CCWWGG 3 cut(s) 9, 558, 641
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
ErhI CCWWGG 3 cut(s) 9, 558, 641
FaeI CATG 8 cut(s) 8, 499, 524, 645, 781, 827, 907, 1027
FalI AAGNNNNNCTT 2 cut(s) 986, 1018
FaqI GGGAC 1 cut(s) 28
FatI CATG 8 cut(s) 4, 495, 520, 641, 777, 823, 903, 1023
FbaI TGATCA 1 cut(s) 990
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 4 cut(s) 587, 600, 612, 734
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 4 cut(s) 587, 600, 612, 734
FspBI CTAG 6 cut(s) 132, 405, 417, 549, 603, 615
GlaI GCGC 2 cut(s) 93, 590
GluI GCNGC 4 cut(s) 587, 600, 612, 734
GsuI CTGGAG 1 cut(s) 701
HaeII RGCGCY 2 cut(s) 95, 592
HaeIII GGCC 5 cut(s) 100, 106, 112, 126, 164
HapII CCGG 2 cut(s) 95, 101
HgaI GACGC 1 cut(s) 49
HhaI GCGC 2 cut(s) 94, 591
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 8 cut(s) 8, 499, 524, 645, 781, 827, 907, 1027
Hin6I GCGC 2 cut(s) 92, 589
HinP1I GCGC 2 cut(s) 92, 589
HincII GTYRAC 2 cut(s) 439, 707
HindII GTYRAC 2 cut(s) 439, 707
HindIII AAGCTT 2 cut(s) 236, 795
HinfI GANTC 4 cut(s) 172, 563, 703, 812
HpaII CCGG 2 cut(s) 95, 101
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 5 cut(s) 358, 439, 707, 816, 935
Hpy188I TCNGA 3 cut(s) 39, 181, 868
Hpy188III TCNNGA 8 cut(s) 32, 302, 381, 521, 767, 824, 889, 994
Hpy8I GTNNAC 5 cut(s) 358, 439, 707, 816, 935
Hpy99I CGWCG 3 cut(s) 91, 118, 232
HpyAV CCTTC 3 cut(s) 371, 508, 679
HpyCH4III ACNGT 3 cut(s) 56, 433, 773
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 5 cut(s) 4, 350, 781, 802, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 608, 733, 739
HpyF3I CTNAG 3 cut(s) 504, 830, 867
HpySE526I ACGT 1 cut(s) 227
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 8 cut(s) 8, 499, 524, 645, 781, 827, 907, 1027
HspAI GCGC 2 cut(s) 92, 589
KasI GGCGCC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 5 cut(s) 34, 137, 283, 653, 990
LmnI GCTCC 3 cut(s) 304, 372, 720
Lsp1109I GCAGC 4 cut(s) 586, 598, 598, 745
LweI GCATC 3 cut(s) 206, 668, 736
MaeI CTAG 6 cut(s) 132, 405, 417, 549, 603, 615
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 36, 139, 285, 655, 992
MboI GATC 5 cut(s) 34, 137, 283, 653, 990
MboII GAAGA 5 cut(s) 274, 543, 612, 654, 920
MfeI CAATTG 1 cut(s) 536
MhlI GDGCHC 2 cut(s) 467, 937
MluCI AATT 7 cut(s) 143, 204, 254, 297, 508, 536, 1011
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 3 cut(s) 166, 712, 821
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 3 cut(s) 186, 480, 1010
MspA1I CMGCKG 2 cut(s) 611, 850
MspI CCGG 2 cut(s) 95, 101
MspR9I CCNGG 4 cut(s) 96, 102, 108, 149
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 2 cut(s) 108, 149
MwoI GCNNNNNNNGC 4 cut(s) 244, 608, 733, 739
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 2 cut(s) 96, 102
NcoI CCATGG 1 cut(s) 641
NdeII GATC 5 cut(s) 34, 137, 283, 653, 990
NlaIII CATG 8 cut(s) 8, 499, 524, 645, 781, 827, 907, 1027
NlaIV GGNNCC 5 cut(s) 93, 99, 105, 127, 759
NmuCI GTSAC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 2 cut(s) 520, 823
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 563
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 4 cut(s) 588, 601, 613, 735
PleI GAGTC 3 cut(s) 166, 711, 820
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 3 cut(s) 166, 711, 820
PshBI ATTAAT 1 cut(s) 1010
Psp6I CCWGG 2 cut(s) 106, 147
PspGI CCWGG 2 cut(s) 106, 147
PspN4I GGNNCC 5 cut(s) 93, 99, 105, 127, 759
PspPI GGNCC 4 cut(s) 98, 104, 110, 125
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 307
PvuII CAGCTG 2 cut(s) 611, 850
SaqAI TTAA 3 cut(s) 186, 480, 1010
SatI GCNGC 4 cut(s) 587, 600, 612, 734
Sau3AI GATC 5 cut(s) 34, 137, 283, 653, 990
Sau96I GGNCC 4 cut(s) 98, 104, 110, 125
SchI GAGTC 3 cut(s) 166, 712, 821
ScrFI CCNGG 4 cut(s) 96, 102, 108, 149
SduI GDGCHC 2 cut(s) 467, 937
SfaNI GCATC 3 cut(s) 206, 668, 736
SfcI CTRYAG 1 cut(s) 348
SfoI GGCGCC 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
SpeI ACTAGT 2 cut(s) 131, 416
SphI GCATGC 1 cut(s) 8
Sse9I AATT 7 cut(s) 143, 204, 254, 297, 508, 536, 1011
SsiI CCGC 1 cut(s) 336
SspDI GGCGCC 1 cut(s) 91
SspI AATATT 2 cut(s) 400, 838
SspMI CTAG 6 cut(s) 132, 405, 417, 549, 603, 615
StyD4I CCNGG 4 cut(s) 94, 100, 106, 147
StyI CCWWGG 3 cut(s) 9, 558, 641
TaaI ACNGT 3 cut(s) 56, 433, 773
TaiI ACGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 140
TasI AATT 7 cut(s) 143, 204, 254, 297, 508, 536, 1011
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 3 cut(s) 186, 480, 1010
Tru9I TTAA 3 cut(s) 186, 480, 1010
TscAI CASTG 3 cut(s) 61, 357, 600
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 586, 599, 611, 733
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 5 cut(s) 402, 509, 766, 812, 974
TspRI CASTG 3 cut(s) 61, 357, 600
VneI GTGCAC 1 cut(s) 933
VspI ATTAAT 1 cut(s) 1010
XapI RAATTY 3 cut(s) 143, 297, 508
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 6 cut(s) 132, 405, 417, 549, 603, 615
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.