Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010818

Physical Location & Seq

Genomic Coordinates Forward (+)

68550736 .. 68554359

Gene Structure 3624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG515700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCATGCCAAGGGGACACAATCGTCTTTTCGGGATCGGACGCAGGAGTTCCACAGTGTAGCAGAGAGGCTAAAGAAGTCATTCTCGTCGGCGCCGGGGCCGGGGCCAGGGCCGTCGCAGAATGGCCCCACTAGTGGATCGAAATTCCAGGAACAACAATCGGCCGTGGCGACTCACTCCGAGTTTAATAAGAGGGCATCCAAAATTGGATTGGGGATACACTCCACGTCGCAGAAGCTTGGAAAGCTGACAAAATTGGCGAAGAGGACTTCTGTTTTTGATGATCCTACAAGGGAAATTCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACCGCACTCAACTCTGCAGTGGTAGACCTTCAGCTCCTATCTCATTCCAGAAATGAAAGTGGGAATATTTCTAGTGACACGACTAGTCATTCAACCACAGTTGTTGACGACCTGAAAAATCGGCTTATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGAACTGAGAATTTGAAGGTTCATGAGAATAGAAGACAATTGTTTTCGTCTAGTGCCTCCAAGGAATCCACAAATCCTTTTGTTCGGCAGCGCCCACTGGCTGCTAGGTCAGCTGCTAGTTCTTCAAGTGCCTCTCCTCCTCCATGGGCTAATGGATCAGCATCTTCCTCGCAGTTGTTCCCAAAGAAGGAGATAGATGGGGAGAGTCAACCATTGCTCCAGCAACAGCATCAGCAGCAACAGCAACAACAGGAGATGGTTCCATATCAAGACAGTTTCATGCAGAGTAGAGCTGAAGCTTTGCAAAATGTTGAGTCCACCATTCATGAGCTGAGTAATATTTTCAACCAGCTGGCGACATTGGTTTCTGAGCAAGGGGAAGTTGCCATCAGGTTTTTCTCTAATCCCACCTATTTACATTGCTGCAGAATATGGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

312

Amino Acids

34.56

Weight (kDa)

9.11

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin-5_N	PF11416	8 - 26	8.7e-07	Syntaxin-5 N-terminal, Sly1p-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24350 AT3G24350
fragaria_vesca	FvH4_2g30200
malus_domestica	MD15G1114700.v1.1 MD15G1114800.v1.1 MD15G1190200.v1.1
prunus_persica	Prupe.1G466200_v2.0.a1 Prupe.1G466200_v2.0.a1 Prupe.7G226900_v2.0.a1
pyrus_communis	pycom15g10340
rosa_chinensis	RchiOBHm_Chr6g0312681
rosa_laevigata	RLG00000010304
rosa_multiflora	Rmu_sc0002859.1_g000001 Rmu_ssc0000412.1_g000010
rosa_roxburghii	Rroxscaffold_7G00156570
rosa_samantha	Rh6AG515700 Rh6BG527200 Rh6CG532100 Rh6DG518100
rosa_wichuraiana	Rw6G044810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	4 cut(s)	42, 145, 278, 661
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	3 cut(s)	143, 297, 508
AcuI	CTGAAG	2 cut(s)	347, 813
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	4 cut(s)	101, 107, 134, 685
AgsI	TTSAA	4 cut(s)	426, 514, 624, 844
AhlI	ACTAGT	2 cut(s)	131, 416
AjiI	CACGTC	1 cut(s)	228
AjnI	CCWGG	2 cut(s)	106, 147
AluBI	AGCT	9 cut(s)	238, 247, 307, 367, 611, 791, 797, 829, 850
AluI	AGCT	9 cut(s)	238, 247, 307, 367, 611, 791, 797, 829, 850
Alw21I	GWGCWC	1 cut(s)	467
AlwI	GGATC	4 cut(s)	42, 145, 278, 661
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	5 cut(s)	98, 104, 110, 124, 162
ApeKI	GCWGC	5 cut(s)	586, 599, 611, 733, 921
ApoI	RAATTY	3 cut(s)	143, 297, 508
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	94, 591
AspS9I	GGNCC	4 cut(s)	98, 104, 110, 125
AsuC2I	CCSGG	2 cut(s)	96, 102
AsuHPI	GGTGA	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	586, 598, 598, 745, 908
BccI	CCATC	3 cut(s)	689, 748, 893
BceAI	ACGGC	2 cut(s)	97, 149
BcgI	CGANNNNNNTGC	2 cut(s)	648, 682
BciT130I	CCWGG	2 cut(s)	108, 149
BciVI	GTATCC	1 cut(s)	210
BcnI	CCSGG	2 cut(s)	96, 102
BcuI	ACTAGT	2 cut(s)	131, 416
BfaI	CTAG	7 cut(s)	132, 405, 417, 549, 603, 615, 937
BfmI	CTRYAG	2 cut(s)	348, 922
BfoI	RGCGCY	2 cut(s)	95, 592
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	5 cut(s)	587, 600, 612, 734, 922
BlsI	GCNGC	5 cut(s)	588, 601, 613, 735, 923
Bme1390I	CCNGG	4 cut(s)	96, 102, 108, 149
BmgBI	CACGTC	1 cut(s)	228
BmgT120I	GGNCC	4 cut(s)	98, 104, 110, 125
BmiI	GGNNCC	5 cut(s)	93, 99, 105, 127, 759
BmrFI	CCNGG	4 cut(s)	96, 102, 108, 149
BmsI	GCATC	3 cut(s)	206, 668, 736
BpiI	GAAGAC	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	701
BpuMI	CCSGG	2 cut(s)	96, 102
BsaBI	GATNNNNATC	1 cut(s)	658
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	7 cut(s)	9, 95, 101, 107, 165, 558, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 107, 134, 685
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	2 cut(s)	710, 916
Bse8I	GATNNNNATC	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	108, 149
BseDI	CCNNGG	7 cut(s)	9, 95, 101, 107, 165, 558, 641
BseGI	GGATG	1 cut(s)	197
BseJI	GATNNNNATC	1 cut(s)	658
BseLI	CCNNNNNNNGG	4 cut(s)	101, 107, 134, 685
BseMI	GCAATG	2 cut(s)	710, 916
BseMII	CTCAG	3 cut(s)	495, 821, 858
BseNI	ACTGG	1 cut(s)	600
BseRI	GAGGAG	2 cut(s)	624, 627
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	5 cut(s)	586, 598, 598, 745, 908
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	100, 106, 112, 126, 164
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	95, 101
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	4 cut(s)	101, 107, 134, 685
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	5 cut(s)	100, 106, 112, 126, 164
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	4 cut(s)	34, 137, 283, 653
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	5 cut(s)	100, 106, 112, 126, 164
BspCNI	CTCAG	3 cut(s)	496, 822, 859
BspHI	TCATGA	2 cut(s)	520, 823
BspLI	GGNNCC	5 cut(s)	93, 99, 105, 127, 759
BspMAI	CTGCAG	2 cut(s)	352, 926
BspPI	GGATC	4 cut(s)	42, 145, 278, 661
BspT107I	GGYRCC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	710, 916
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	7 cut(s)	9, 95, 101, 107, 165, 558, 641
BssMI	GATC	4 cut(s)	34, 137, 283, 653
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	3 cut(s)	9, 558, 641
Bst2UI	CCWGG	2 cut(s)	108, 149
Bst4CI	ACNGT	3 cut(s)	56, 433, 773
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	6, 852
BstDEI	CTNAG	3 cut(s)	504, 830, 867
BstDSI	CCRYGG	2 cut(s)	165, 641
BstF5I	GGATG	1 cut(s)	197
BstH2I	RGCGCY	2 cut(s)	95, 592
BstHHI	GCGC	2 cut(s)	94, 591
BstKTI	GATC	4 cut(s)	37, 140, 286, 656
BstMBI	GATC	4 cut(s)	34, 137, 283, 653
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 608, 733, 739
BstNI	CCWGG	2 cut(s)	108, 149
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	4 cut(s)	94, 100, 106, 147
BstSFI	CTRYAG	2 cut(s)	348, 922
BstV1I	GCAGC	5 cut(s)	586, 598, 598, 745, 908
BstV2I	GAAGAC	1 cut(s)	538
BstZI	CGGCCG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	5 cut(s)	100, 106, 112, 126, 164
BtgI	CCRYGG	2 cut(s)	165, 641
BtrI	CACGTC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	61, 357, 593
Cac8I	GCNNGC	2 cut(s)	6, 852
CaiI	CAGNNNCTG	1 cut(s)	307
CciI	TCATGA	2 cut(s)	520, 823
CfoI	GCGC	2 cut(s)	94, 591
Cfr13I	GGNCC	4 cut(s)	98, 104, 110, 125
CseI	GACGC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	6 cut(s)	5, 496, 521, 642, 778, 824
DdeI	CTNAG	3 cut(s)	504, 830, 867
DinI	GGCGCC	1 cut(s)	93
DpnI	GATC	4 cut(s)	36, 139, 285, 655
DpnII	GATC	4 cut(s)	34, 137, 283, 653
DraI	TTTAAA	1 cut(s)	481
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	162
EagI	CGGCCG	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
EclXI	CGGCCG	1 cut(s)	162
Eco130I	CCWWGG	3 cut(s)	9, 558, 641
Eco52I	CGGCCG	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	347, 813
EcoRII	CCWGG	2 cut(s)	106, 147
EcoT14I	CCWWGG	3 cut(s)	9, 558, 641
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	93
EheI	GGCGCC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	9, 558, 641
FaeI	CATG	6 cut(s)	8, 499, 524, 645, 781, 827
FaiI	YATR	9 cut(s)	6, 461, 497, 522, 643, 763, 779, 825, 931
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	6 cut(s)	4, 495, 520, 641, 777, 823
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	587, 600, 612, 734, 922
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	5 cut(s)	587, 600, 612, 734, 922
FspBI	CTAG	7 cut(s)	132, 405, 417, 549, 603, 615, 937
GlaI	GCGC	2 cut(s)	93, 590
GluI	GCNGC	5 cut(s)	587, 600, 612, 734, 922
GsuI	CTGGAG	1 cut(s)	701
HaeII	RGCGCY	2 cut(s)	95, 592
HaeIII	GGCC	5 cut(s)	100, 106, 112, 126, 164
HapII	CCGG	2 cut(s)	95, 101
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	94, 591
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	6 cut(s)	8, 499, 524, 645, 781, 827
Hin6I	GCGC	2 cut(s)	92, 589
HinP1I	GCGC	2 cut(s)	92, 589
HincII	GTYRAC	2 cut(s)	439, 707
HindII	GTYRAC	2 cut(s)	439, 707
HindIII	AAGCTT	2 cut(s)	236, 795
HinfI	GANTC	4 cut(s)	172, 563, 703, 812
HpaII	CCGG	2 cut(s)	95, 101
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	4 cut(s)	358, 439, 707, 816
Hpy188I	TCNGA	3 cut(s)	39, 181, 868
Hpy188III	TCNNGA	6 cut(s)	32, 302, 381, 521, 767, 824
Hpy8I	GTNNAC	4 cut(s)	358, 439, 707, 816
Hpy99I	CGWCG	3 cut(s)	91, 118, 232
HpyAV	CCTTC	3 cut(s)	371, 508, 679
HpyCH4III	ACNGT	3 cut(s)	56, 433, 773
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	4, 350, 781, 802, 924
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 608, 733, 739
HpyF3I	CTNAG	3 cut(s)	504, 830, 867
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	6 cut(s)	8, 499, 524, 645, 781, 827
HspAI	GCGC	2 cut(s)	92, 589
KasI	GGCGCC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	34, 137, 283, 653
LmnI	GCTCC	3 cut(s)	304, 372, 720
Lsp1109I	GCAGC	5 cut(s)	586, 598, 598, 745, 908
LweI	GCATC	3 cut(s)	206, 668, 736
MaeI	CTAG	7 cut(s)	132, 405, 417, 549, 603, 615, 937
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	36, 139, 285, 655
MboI	GATC	4 cut(s)	34, 137, 283, 653
MboII	GAAGA	4 cut(s)	274, 543, 612, 654
MfeI	CAATTG	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	6 cut(s)	143, 204, 254, 297, 508, 536
Mly113I	GGCGCC	1 cut(s)	92
MlyI	GAGTC	3 cut(s)	166, 712, 821
MnlI	CCTC	9 cut(s)	60, 186, 258, 500, 565, 640, 645, 648, 676
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	186, 480
MspA1I	CMGCKG	2 cut(s)	611, 850
MspI	CCGG	2 cut(s)	95, 101
MspR9I	CCNGG	4 cut(s)	96, 102, 108, 149
MunI	CAATTG	1 cut(s)	536
MvaI	CCWGG	2 cut(s)	108, 149
MwoI	GCNNNNNNNGC	4 cut(s)	244, 608, 733, 739
NarI	GGCGCC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	96, 102
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	4 cut(s)	34, 137, 283, 653
NlaIII	CATG	6 cut(s)	8, 499, 524, 645, 781, 827
NlaIV	GGNNCC	5 cut(s)	93, 99, 105, 127, 759
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	2 cut(s)	520, 823
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	563
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	588, 601, 613, 735, 923
PleI	GAGTC	3 cut(s)	166, 711, 820
PluTI	GGCGCC	1 cut(s)	95
PpsI	GAGTC	3 cut(s)	166, 711, 820
Psp6I	CCWGG	2 cut(s)	106, 147
PspGI	CCWGG	2 cut(s)	106, 147
PspN4I	GGNNCC	5 cut(s)	93, 99, 105, 127, 759
PspPI	GGNCC	4 cut(s)	98, 104, 110, 125
PstI	CTGCAG	2 cut(s)	352, 926
PstNI	CAGNNNCTG	1 cut(s)	307
PvuII	CAGCTG	2 cut(s)	611, 850
SaqAI	TTAA	2 cut(s)	186, 480
SatI	GCNGC	5 cut(s)	587, 600, 612, 734, 922
Sau3AI	GATC	4 cut(s)	34, 137, 283, 653
Sau96I	GGNCC	4 cut(s)	98, 104, 110, 125
SchI	GAGTC	3 cut(s)	166, 712, 821
ScrFI	CCNGG	4 cut(s)	96, 102, 108, 149
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	3 cut(s)	206, 668, 736
SfcI	CTRYAG	2 cut(s)	348, 922
SfoI	GGCGCC	1 cut(s)	93
SpeI	ACTAGT	2 cut(s)	131, 416
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	6 cut(s)	143, 204, 254, 297, 508, 536
SsiI	CCGC	1 cut(s)	336
SspDI	GGCGCC	1 cut(s)	91
SspI	AATATT	2 cut(s)	400, 838
SspMI	CTAG	7 cut(s)	132, 405, 417, 549, 603, 615, 937
StyD4I	CCNGG	4 cut(s)	94, 100, 106, 147
StyI	CCWWGG	3 cut(s)	9, 558, 641
TaaI	ACNGT	3 cut(s)	56, 433, 773
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	140
TasI	AATT	6 cut(s)	143, 204, 254, 297, 508, 536
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	2 cut(s)	186, 480
Tru9I	TTAA	2 cut(s)	186, 480
TscAI	CASTG	3 cut(s)	61, 357, 600
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	5 cut(s)	586, 599, 611, 733, 921
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	4 cut(s)	402, 509, 766, 812
TspRI	CASTG	3 cut(s)	61, 357, 600
XapI	RAATTY	3 cut(s)	143, 297, 508
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	7 cut(s)	132, 405, 417, 549, 603, 615, 937
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.