Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010818

Physical Location & Seq

Genomic Coordinates Forward (+)

38882634 .. 38886369

Gene Structure 3736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G466200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCATGCGAAAGCGGCACAATCGTCTTTTAGGGATCGGACGCAGGAGTTTCAGAGTGTAGCAGAGAGGCTAAAAAAGTCGTTCTCATCAGGACCAGGGTCGGGGCAGAATGGTCCAAGTAGTGGATCGAAATCGAAATTCGAGGAACAACGTTCTGTGGTTGCGGTTCAGTCCGAGTTCAATAAGAGGGCTTCCAAAATCGGGTACGGGATACACCAGACATCGCAGAAGCTTGGAAAGCTGACTAAGTTGGCAAAGAGGACTTCCGTGTTTGATGACCCTACCAGGGAAATTCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACTGCACTTAACTCTGCAGTGGTAGACCTTCAGCTTCTATCCAACTCCAGAAATGACAGTGGGAATATTTCTAGTGACACGACTAGTCATTCAACCACAGTTGTTGATGACTTGAAAAATCGGCTTATGAGCACTACAAAAGAGTTTAAAGAAGTCCTCACCATGCGGACTGAGAATATGAAGGTTCATGAGAATAGAAGACAATTGTTTTCTGCTTCTGCATCTAAGGATGCTGCAAATCCTTTTGTTCGTCAGCGTCCACTGGCTGCCAGGTCAGCTGCTAGTTCTTCAAGTGCCTCTCCTCCTCCATGGGCTAATGGATCACCATCTTCATCACAGTTGTTCCCCAAGAAGCAGACGGATGGGGAGAGTCAGCCATTGCTCCAGCAGCAGCAGCAACAGCAACAGCAACAACAGGAGATGGTTCCGTTGCAAGATAGTTACATGCAGAGCAGAGCTGAAGCTTTGCAAAATGTTGAGTCCACTATTCATGAGCTAAGCAATATTTTCAACCAGCTGGCGACCTTGGTGTCTCAGCAAGGGGAGATTGCCATCAGGATTGATGAGAACATGGATGACACGTTGGCGAATGTGGAGGGTGCACAAGGGGCACTGCTCAAGTATCTGAATAGCATATCATCTAATAGGTGGCTGATGATCAAGATATTCTTTGTACTAATTTTTTTCCTCATGGTTTTCCTATTTTTTGTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

348

Amino Acids

38.53

Weight (kDa)

9.3

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24350 AT3G24350
fragaria_vesca	FvH4_2g30200
malus_domestica	MD15G1114700.v1.1 MD15G1114800.v1.1 MD15G1190200.v1.1
prunus_persica	Prupe.1G466200_v2.0.a1 Prupe.1G466200_v2.0.a1 Prupe.7G226900_v2.0.a1
pyrus_communis	pycom15g10340
rosa_chinensis	RchiOBHm_Chr6g0312681
rosa_laevigata	RLG00000010304
rosa_multiflora	Rmu_sc0002859.1_g000001 Rmu_ssc0000412.1_g000010
rosa_roxburghii	Rroxscaffold_7G00156570
rosa_samantha	Rh6AG515700 Rh6BG527200 Rh6CG532100 Rh6DG518100
rosa_wichuraiana	Rw6G044810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	856
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	3 cut(s)	14, 164, 493
AclI	AACGTT	1 cut(s)	151
AclWI	GGATC	3 cut(s)	42, 133, 655
AcsI	RAATTY	2 cut(s)	137, 291
AcuI	CTGAAG	2 cut(s)	341, 807
AfaI	GTAC	2 cut(s)	206, 1002
AfiI	CCNNNNNNNGG	4 cut(s)	101, 122, 201, 286
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	5 cut(s)	181, 420, 442, 618, 838
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	3 cut(s)	94, 284, 596
AluBI	AGCT	9 cut(s)	232, 241, 301, 361, 605, 785, 791, 823, 844
AluI	AGCT	9 cut(s)	232, 241, 301, 361, 605, 785, 791, 823, 844
Alw21I	GWGCWC	2 cut(s)	461, 931
Alw26I	GTCTC	1 cut(s)	864
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	3 cut(s)	42, 133, 655
AlwNI	CAGNNNCTG	1 cut(s)	301
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	6 cut(s)	560, 593, 605, 715, 718, 721
ApoI	RAATTY	2 cut(s)	137, 291
AspS9I	GGNCC	2 cut(s)	92, 113
AsuHPI	GGTGA	2 cut(s)	478, 642
AvaII	GGWCC	2 cut(s)	92, 113
BaeGI	GKGCMC	2 cut(s)	931, 940
BbsI	GAAGAC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	461, 931
BbvI	GCAGC	6 cut(s)	547, 580, 592, 727, 730, 733
BccI	CCATC	4 cut(s)	661, 683, 742, 887
BciT130I	CCWGG	3 cut(s)	96, 286, 598
BciVI	GTATCC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	984
BcoDI	GTCTC	1 cut(s)	864
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	3 cut(s)	399, 411, 609
BfmI	CTRYAG	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	7 cut(s)	15, 561, 594, 606, 716, 719, 722
BlpI	GCTNAGC	1 cut(s)	824
BlsI	GCNGC	7 cut(s)	16, 562, 595, 607, 717, 720, 723
Bme1390I	CCNGG	3 cut(s)	96, 286, 598
Bme18I	GGWCC	2 cut(s)	92, 113
BmgT120I	GGNCC	2 cut(s)	92, 113
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	3 cut(s)	96, 286, 598
BmsI	GCATC	2 cut(s)	547, 557
BoxI	GACNNNNGTC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	532
BpmI	CTGGAG	2 cut(s)	358, 695
Bpu1102I	GCTNAGC	1 cut(s)	824
BpuEI	CTTGAG	1 cut(s)	929
BsaBI	GATNNNNATC	3 cut(s)	130, 652, 878
BsaJI	CCNNGG	4 cut(s)	95, 285, 635, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 122, 201, 286
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	704
Bse8I	GATNNNNATC	3 cut(s)	130, 652, 878
BseBI	CCWGG	3 cut(s)	96, 286, 598
BseDI	CCNNGG	4 cut(s)	95, 285, 635, 852
BseGI	GGATG	3 cut(s)	562, 694, 907
BseJI	GATNNNNATC	3 cut(s)	130, 652, 878
BseLI	CCNNNNNNNGG	4 cut(s)	101, 122, 201, 286
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	2 cut(s)	489, 875
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	2 cut(s)	618, 621
BseSI	GKGCMC	2 cut(s)	931, 940
BseXI	GCAGC	6 cut(s)	547, 580, 592, 727, 730, 733
BsgI	GTGCAG	1 cut(s)	315
BsiHKAI	GWGCWC	2 cut(s)	461, 931
BslI	CCNNNNNNNGG	4 cut(s)	101, 122, 201, 286
BsmAI	GTCTC	1 cut(s)	864
Bsp1286I	GDGCHC	3 cut(s)	461, 931, 940
Bsp143I	GATC	4 cut(s)	34, 125, 647, 984
Bsp1720I	GCTNAGC	1 cut(s)	824
Bsp19I	CCATGG	1 cut(s)	635
BspACI	CCGC	3 cut(s)	14, 164, 493
BspCNI	CTCAG	2 cut(s)	490, 874
BspHI	TCATGA	2 cut(s)	514, 817
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	3 cut(s)	42, 133, 655
BsrDI	GCAATG	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	4 cut(s)	95, 285, 635, 852
BssMI	GATC	4 cut(s)	34, 125, 647, 984
BssT1I	CCWWGG	2 cut(s)	635, 852
Bst2UI	CCWGG	3 cut(s)	96, 286, 598
Bst4CI	ACNGT	3 cut(s)	386, 427, 666
BstC8I	GCNNGC	2 cut(s)	6, 846
BstDEI	CTNAG	5 cut(s)	246, 498, 552, 824, 861
BstDSI	CCRYGG	1 cut(s)	635
BstF5I	GGATG	3 cut(s)	562, 694, 907
BstKTI	GATC	4 cut(s)	37, 128, 650, 987
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	4 cut(s)	34, 125, 647, 984
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 238, 602, 715, 721, 727, 935
BstNI	CCWGG	3 cut(s)	96, 286, 598
BstNSI	RCATGY	2 cut(s)	8, 775
BstPAI	GACNNNNGTC	1 cut(s)	97
BstSCI	CCNGG	3 cut(s)	94, 284, 596
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	2 cut(s)	931, 940
BstV1I	GCAGC	6 cut(s)	547, 580, 592, 727, 730, 733
BstV2I	GAAGAC	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	635
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	562, 694, 907
BtsI	GCAGTG	2 cut(s)	351, 938
BtsIMutI	CAGTG	4 cut(s)	351, 391, 587, 938
Cac8I	GCNNGC	2 cut(s)	6, 846
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	2 cut(s)	514, 817
Cfr13I	GGNCC	2 cut(s)	92, 113
CseI	GACGC	2 cut(s)	49, 572
Csp6I	GTAC	2 cut(s)	205, 1001
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	8 cut(s)	5, 490, 515, 636, 772, 818, 898, 1018
CviQI	GTAC	2 cut(s)	205, 1001
DdeI	CTNAG	5 cut(s)	246, 498, 552, 824, 861
DpnI	GATC	4 cut(s)	36, 127, 649, 986
DpnII	GATC	4 cut(s)	34, 125, 647, 984
DraI	TTTAAA	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	856
DseDI	GACNNNNNNGTC	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	635, 852
Eco47I	GGWCC	2 cut(s)	92, 113
Eco57I	CTGAAG	2 cut(s)	341, 807
EcoRII	CCWGG	3 cut(s)	94, 284, 596
EcoT14I	CCWWGG	2 cut(s)	635, 852
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	635, 852
FaeI	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FatI	CATG	8 cut(s)	4, 489, 514, 635, 771, 817, 897, 1017
FbaI	TGATCA	1 cut(s)	984
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	7 cut(s)	15, 561, 594, 606, 716, 719, 722
FokI	GGATG	3 cut(s)	569, 701, 914
Fsp4HI	GCNGC	7 cut(s)	15, 561, 594, 606, 716, 719, 722
FspBI	CTAG	3 cut(s)	399, 411, 609
GluI	GCNGC	7 cut(s)	15, 561, 594, 606, 716, 719, 722
GsuI	CTGGAG	2 cut(s)	358, 695
HgaI	GACGC	2 cut(s)	49, 572
Hin1II	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
HindIII	AAGCTT	2 cut(s)	230, 789
HinfI	GANTC	2 cut(s)	697, 806
HphI	GGTGA	2 cut(s)	478, 642
Hpy166II	GTNNAC	4 cut(s)	352, 587, 810, 929
Hpy188I	TCNGA	4 cut(s)	39, 54, 175, 954
Hpy188III	TCNNGA	7 cut(s)	90, 296, 375, 515, 818, 883, 988
Hpy8I	GTNNAC	4 cut(s)	352, 587, 810, 929
HpyAV	CCTTC	2 cut(s)	365, 502
HpyCH4III	ACNGT	3 cut(s)	386, 427, 666
HpyCH4IV	ACGT	2 cut(s)	151, 908
HpyCH4V	TGCA	9 cut(s)	4, 332, 344, 548, 563, 760, 775, 796, 929
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 238, 602, 715, 721, 727, 935
HpyF3I	CTNAG	5 cut(s)	246, 498, 552, 824, 861
HpySE526I	ACGT	2 cut(s)	151, 908
Hsp92II	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
Ksp22I	TGATCA	1 cut(s)	984
Kzo9I	GATC	4 cut(s)	34, 125, 647, 984
LmnI	GCTCC	2 cut(s)	298, 714
Lsp1109I	GCAGC	6 cut(s)	547, 580, 592, 727, 730, 733
LweI	GCATC	2 cut(s)	547, 557
MaeI	CTAG	3 cut(s)	399, 411, 609
MaeII	ACGT	2 cut(s)	151, 908
MaeIII	GTNAC	2 cut(s)	401, 767
MalI	GATC	4 cut(s)	36, 127, 649, 986
MboI	GATC	4 cut(s)	34, 125, 647, 984
MboII	GAAGA	3 cut(s)	537, 606, 648
MfeI	CAATTG	1 cut(s)	530
MhlI	GDGCHC	3 cut(s)	461, 931, 940
MluCI	AATT	4 cut(s)	137, 291, 530, 1005
MlyI	GAGTC	2 cut(s)	706, 815
MmeI	TCCRAC	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	336, 474
MspA1I	CMGCKG	2 cut(s)	605, 844
MspR9I	CCNGG	3 cut(s)	96, 286, 598
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	3 cut(s)	96, 286, 598
MwoI	GCNNNNNNNGC	7 cut(s)	14, 238, 602, 715, 721, 727, 935
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	4 cut(s)	34, 125, 647, 984
NlaIII	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 775
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	2 cut(s)	514, 817
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	7 cut(s)	16, 562, 595, 607, 717, 720, 723
PleI	GAGTC	2 cut(s)	705, 814
PpsI	GAGTC	2 cut(s)	705, 814
PshAI	GACNNNNGTC	1 cut(s)	97
Psp1406I	AACGTT	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	94, 284, 596
PspGI	CCWGG	3 cut(s)	94, 284, 596
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	92, 113
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	2 cut(s)	605, 844
RsaI	GTAC	2 cut(s)	206, 1002
RsaNI	GTAC	2 cut(s)	205, 1001
SaqAI	TTAA	2 cut(s)	336, 474
SatI	GCNGC	7 cut(s)	15, 561, 594, 606, 716, 719, 722
Sau3AI	GATC	4 cut(s)	34, 125, 647, 984
Sau96I	GGNCC	2 cut(s)	92, 113
SchI	GAGTC	2 cut(s)	706, 815
ScrFI	CCNGG	3 cut(s)	96, 286, 598
SduI	GDGCHC	3 cut(s)	461, 931, 940
SfaNI	GCATC	2 cut(s)	547, 557
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	92, 113
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SpeI	ACTAGT	1 cut(s)	410
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	137, 291, 530, 1005
SsiI	CCGC	3 cut(s)	14, 164, 493
SspI	AATATT	2 cut(s)	394, 832
SspMI	CTAG	3 cut(s)	399, 411, 609
StyD4I	CCNGG	3 cut(s)	94, 284, 596
StyI	CCWWGG	2 cut(s)	635, 852
TaaI	ACNGT	3 cut(s)	386, 427, 666
TaiI	ACGT	2 cut(s)	154, 911
TaqI	TCGA	3 cut(s)	128, 134, 141
TasI	AATT	4 cut(s)	137, 291, 530, 1005
TatI	WGTACW	1 cut(s)	1000
TauI	GCSGC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	336, 474
Tru9I	TTAA	2 cut(s)	336, 474
TscAI	CASTG	4 cut(s)	351, 391, 594, 945
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	6 cut(s)	560, 593, 605, 715, 718, 721
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	4 cut(s)	503, 521, 648, 806
TspGWI	ACGGA	3 cut(s)	256, 701, 744
TspRI	CASTG	4 cut(s)	351, 391, 594, 945
Van91I	CCANNNNNTGG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	927
VpaK11BI	GGWCC	2 cut(s)	92, 113
XapI	RAATTY	2 cut(s)	137, 291
XceI	RCATGY	2 cut(s)	8, 775
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	3 cut(s)	399, 411, 609
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.