Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010818

Physical Location & Seq

Genomic Coordinates Forward (+)

71860677 .. 71864748

Gene Structure 4072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG527200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCATGCCAAGGGGACACAATCGTCTTTTCGGGATCGGACGCAGGAGTTCCACAGTGTAGCAGAGAGGCTAAAGAAGTCATTCTCGTCGGCGCCGGGGCCGGGGCCGGGGCCGGGGCCGTCGCAGAATGGCCCGACTAGTGGATCGAAATTCCAGGAACAACAATCGGCCGTGGCGACTCACTCCGAGTTTAATAAGAGGGCATCCAAAATTGGATTGGGGATACACTCCACGTCGCAGAAGCTTGGAAAGCTGACAAAATTGGCAAAGAGGACTTCTGTTTTTGATGATCCTACAAGGGAAATTCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACTGCACTCAACTCTGCAGTGGTAGACCTTCAGCTCCTATCTCATTCCAGAAATCAAAGTGGGAATATTTCTAGTGACACGACTAGTCATTCAACCACAGTTGTCGACGACCTGAAAAATCGGCTTATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGAACTGAGAATTTGAAGGTTCATGAGAATAGAAGACAATTGTTTTCGTCTAGTGCCTCCAAGGAATCCACAAATCCTTTTGTTCGGCAGCGCCCACTGGCTGCTAGGTCAGCTGCTAGTTCTTCAAGTGCCTCTCCTCCTCCATGGGCTAATGGATCAGCATCTTCCTCGCAGTTGTTCCCAAAGAAGGAGATAGATGGGGAGAGTCAACCATTGCTCCAGCAACAGCATCAGCAGCAACAGCAACAGCAACAACAGGAGATGGTTCCGTATCAAGACAGTTTCATGCAGAGTAGAGCTGAAGCTTTGCAAAATGTTGAGTCCACCATTCATGAGCTGAGTAATATTTTCAACCAGCTGGCGACATTGGTTTCTGAGCAAGGGGAAGTTGCCATCAGGTTTTTCTCTAATCCCACCTATTTACATTGCTGCAGAATATGGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

316

Amino Acids

34.97

Weight (kDa)

9.26

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin-5_N	PF11416	8 - 26	8.9e-07	Syntaxin-5 N-terminal, Sly1p-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24350 AT3G24350
fragaria_vesca	FvH4_2g30200
malus_domestica	MD15G1114700.v1.1 MD15G1114800.v1.1 MD15G1190200.v1.1
prunus_persica	Prupe.1G466200_v2.0.a1 Prupe.1G466200_v2.0.a1 Prupe.7G226900_v2.0.a1
pyrus_communis	pycom15g10340
rosa_chinensis	RchiOBHm_Chr6g0312681
rosa_laevigata	RLG00000010304
rosa_multiflora	Rmu_sc0002859.1_g000001 Rmu_ssc0000412.1_g000010
rosa_roxburghii	Rroxscaffold_7G00156570
rosa_samantha	Rh6AG515700 Rh6BG527200 Rh6CG532100 Rh6DG518100
rosa_wichuraiana	Rw6G044810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	363, 444
AclWI	GGATC	4 cut(s)	42, 151, 284, 667
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	3 cut(s)	149, 303, 514
AcuI	CTGAAG	2 cut(s)	353, 825
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	5 cut(s)	101, 107, 113, 140, 691
AgsI	TTSAA	4 cut(s)	432, 520, 630, 856
AhlI	ACTAGT	2 cut(s)	137, 422
AjiI	CACGTC	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	9 cut(s)	244, 253, 313, 373, 617, 803, 809, 841, 862
AluI	AGCT	9 cut(s)	244, 253, 313, 373, 617, 803, 809, 841, 862
Alw21I	GWGCWC	1 cut(s)	473
AlwI	GGATC	4 cut(s)	42, 151, 284, 667
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	6 cut(s)	98, 104, 110, 116, 130, 168
ApeKI	GCWGC	5 cut(s)	592, 605, 617, 739, 933
ApoI	RAATTY	3 cut(s)	149, 303, 514
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	94, 597
AspS9I	GGNCC	5 cut(s)	98, 104, 110, 116, 131
AsuC2I	CCSGG	4 cut(s)	96, 102, 108, 114
AsuHPI	GGTGA	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	5 cut(s)	592, 604, 604, 751, 920
BccI	CCATC	3 cut(s)	695, 760, 905
BceAI	ACGGC	2 cut(s)	103, 155
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	216
BcnI	CCSGG	4 cut(s)	96, 102, 108, 114
BcuI	ACTAGT	2 cut(s)	137, 422
BfaI	CTAG	7 cut(s)	138, 411, 423, 555, 609, 621, 949
BfmI	CTRYAG	2 cut(s)	354, 934
BfoI	RGCGCY	2 cut(s)	95, 598
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	5 cut(s)	593, 606, 618, 740, 934
BlsI	GCNGC	5 cut(s)	594, 607, 619, 741, 935
Bme1390I	CCNGG	5 cut(s)	96, 102, 108, 114, 155
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	5 cut(s)	98, 104, 110, 116, 131
BmiI	GGNNCC	6 cut(s)	93, 99, 105, 111, 117, 771
BmrFI	CCNGG	5 cut(s)	96, 102, 108, 114, 155
BmsI	GCATC	3 cut(s)	212, 674, 742
BpiI	GAAGAC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	707
BpuMI	CCSGG	4 cut(s)	96, 102, 108, 114
BsaBI	GATNNNNATC	1 cut(s)	664
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	8 cut(s)	9, 95, 101, 107, 113, 171, 564, 647
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 107, 113, 140, 691
Bse1I	ACTGG	1 cut(s)	606
Bse3DI	GCAATG	2 cut(s)	716, 928
Bse8I	GATNNNNATC	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	8 cut(s)	9, 95, 101, 107, 113, 171, 564, 647
BseGI	GGATG	1 cut(s)	203
BseJI	GATNNNNATC	1 cut(s)	664
BseLI	CCNNNNNNNGG	5 cut(s)	101, 107, 113, 140, 691
BseMI	GCAATG	2 cut(s)	716, 928
BseMII	CTCAG	3 cut(s)	501, 833, 870
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	2 cut(s)	630, 633
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	5 cut(s)	592, 604, 604, 751, 920
BsgI	GTGCAG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	6 cut(s)	100, 106, 112, 118, 132, 170
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	4 cut(s)	95, 101, 107, 113
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	5 cut(s)	101, 107, 113, 140, 691
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	6 cut(s)	100, 106, 112, 118, 132, 170
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	34, 143, 289, 659
Bsp19I	CCATGG	1 cut(s)	647
BspANI	GGCC	6 cut(s)	100, 106, 112, 118, 132, 170
BspCNI	CTCAG	3 cut(s)	502, 834, 871
BspHI	TCATGA	2 cut(s)	526, 835
BspLI	GGNNCC	6 cut(s)	93, 99, 105, 111, 117, 771
BspMAI	CTGCAG	2 cut(s)	358, 938
BspPI	GGATC	4 cut(s)	42, 151, 284, 667
BspT107I	GGYRCC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	716, 928
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	8 cut(s)	9, 95, 101, 107, 113, 171, 564, 647
BssMI	GATC	4 cut(s)	34, 143, 289, 659
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	3 cut(s)	9, 564, 647
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	56, 439, 785
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	6, 864
BstDEI	CTNAG	3 cut(s)	510, 842, 879
BstDSI	CCRYGG	2 cut(s)	171, 647
BstF5I	GGATG	1 cut(s)	203
BstH2I	RGCGCY	2 cut(s)	95, 598
BstHHI	GCGC	2 cut(s)	94, 597
BstKTI	GATC	4 cut(s)	37, 146, 292, 662
BstMBI	GATC	4 cut(s)	34, 143, 289, 659
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	250, 614, 739, 745
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	5 cut(s)	94, 100, 106, 112, 153
BstSFI	CTRYAG	2 cut(s)	354, 934
BstV1I	GCAGC	5 cut(s)	592, 604, 604, 751, 920
BstV2I	GAAGAC	1 cut(s)	544
BstZI	CGGCCG	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	6 cut(s)	100, 106, 112, 118, 132, 170
BtgI	CCRYGG	2 cut(s)	171, 647
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	61, 363, 599
Cac8I	GCNNGC	2 cut(s)	6, 864
CaiI	CAGNNNCTG	1 cut(s)	313
CciI	TCATGA	2 cut(s)	526, 835
CfoI	GCGC	2 cut(s)	94, 597
Cfr13I	GGNCC	5 cut(s)	98, 104, 110, 116, 131
CseI	GACGC	1 cut(s)	49
CviAII	CATG	6 cut(s)	5, 502, 527, 648, 790, 836
DdeI	CTNAG	3 cut(s)	510, 842, 879
DinI	GGCGCC	1 cut(s)	93
DpnI	GATC	4 cut(s)	36, 145, 291, 661
DpnII	GATC	4 cut(s)	34, 143, 289, 659
DraI	TTTAAA	1 cut(s)	487
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	3 cut(s)	9, 564, 647
Eco52I	CGGCCG	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	353, 825
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	3 cut(s)	9, 564, 647
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	93
EheI	GGCGCC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	9, 564, 647
FaeI	CATG	6 cut(s)	8, 505, 530, 651, 793, 839
FaiI	YATR	8 cut(s)	6, 467, 503, 528, 649, 791, 837, 943
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	6 cut(s)	4, 501, 526, 647, 789, 835
FblI	GTMKAC	2 cut(s)	363, 444
Fnu4HI	GCNGC	5 cut(s)	593, 606, 618, 740, 934
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	5 cut(s)	593, 606, 618, 740, 934
FspBI	CTAG	7 cut(s)	138, 411, 423, 555, 609, 621, 949
GlaI	GCGC	2 cut(s)	93, 596
GluI	GCNGC	5 cut(s)	593, 606, 618, 740, 934
GsuI	CTGGAG	1 cut(s)	707
HaeII	RGCGCY	2 cut(s)	95, 598
HaeIII	GGCC	6 cut(s)	100, 106, 112, 118, 132, 170
HapII	CCGG	4 cut(s)	95, 101, 107, 113
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	94, 597
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	6 cut(s)	8, 505, 530, 651, 793, 839
Hin6I	GCGC	2 cut(s)	92, 595
HinP1I	GCGC	2 cut(s)	92, 595
HincII	GTYRAC	2 cut(s)	445, 713
HindII	GTYRAC	2 cut(s)	445, 713
HindIII	AAGCTT	2 cut(s)	242, 807
HinfI	GANTC	4 cut(s)	178, 569, 709, 824
HpaII	CCGG	4 cut(s)	95, 101, 107, 113
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	4 cut(s)	364, 445, 713, 828
Hpy188I	TCNGA	3 cut(s)	39, 187, 880
Hpy188III	TCNNGA	6 cut(s)	32, 308, 387, 527, 779, 836
Hpy8I	GTNNAC	4 cut(s)	364, 445, 713, 828
Hpy99I	CGWCG	4 cut(s)	91, 124, 238, 449
HpyAV	CCTTC	3 cut(s)	377, 514, 685
HpyCH4III	ACNGT	3 cut(s)	56, 439, 785
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	6 cut(s)	4, 344, 356, 793, 814, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	250, 614, 739, 745
HpyF3I	CTNAG	3 cut(s)	510, 842, 879
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	6 cut(s)	8, 505, 530, 651, 793, 839
HspAI	GCGC	2 cut(s)	92, 595
KasI	GGCGCC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	34, 143, 289, 659
LmnI	GCTCC	3 cut(s)	310, 378, 726
Lsp1109I	GCAGC	5 cut(s)	592, 604, 604, 751, 920
LweI	GCATC	3 cut(s)	212, 674, 742
MaeI	CTAG	7 cut(s)	138, 411, 423, 555, 609, 621, 949
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	4 cut(s)	36, 145, 291, 661
MboI	GATC	4 cut(s)	34, 143, 289, 659
MboII	GAAGA	3 cut(s)	549, 618, 660
MfeI	CAATTG	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	6 cut(s)	149, 210, 260, 303, 514, 542
Mly113I	GGCGCC	1 cut(s)	92
MlyI	GAGTC	3 cut(s)	172, 718, 833
MnlI	CCTC	9 cut(s)	60, 192, 264, 506, 571, 646, 651, 654, 682
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	192, 486
MspA1I	CMGCKG	2 cut(s)	617, 862
MspI	CCGG	4 cut(s)	95, 101, 107, 113
MspR9I	CCNGG	5 cut(s)	96, 102, 108, 114, 155
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	250, 614, 739, 745
NarI	GGCGCC	1 cut(s)	92
NciI	CCSGG	4 cut(s)	96, 102, 108, 114
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	4 cut(s)	34, 143, 289, 659
NlaIII	CATG	6 cut(s)	8, 505, 530, 651, 793, 839
NlaIV	GGNNCC	6 cut(s)	93, 99, 105, 111, 117, 771
NmuCI	GTSAC	1 cut(s)	413
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	2 cut(s)	526, 835
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	569
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	5 cut(s)	594, 607, 619, 741, 935
PleI	GAGTC	3 cut(s)	172, 717, 832
PluTI	GGCGCC	1 cut(s)	95
PpsI	GAGTC	3 cut(s)	172, 717, 832
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	6 cut(s)	93, 99, 105, 111, 117, 771
PspPI	GGNCC	5 cut(s)	98, 104, 110, 116, 131
PstI	CTGCAG	2 cut(s)	358, 938
PstNI	CAGNNNCTG	1 cut(s)	313
PvuII	CAGCTG	2 cut(s)	617, 862
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	192, 486
SatI	GCNGC	5 cut(s)	593, 606, 618, 740, 934
Sau3AI	GATC	4 cut(s)	34, 143, 289, 659
Sau96I	GGNCC	5 cut(s)	98, 104, 110, 116, 131
SchI	GAGTC	3 cut(s)	172, 718, 833
ScrFI	CCNGG	5 cut(s)	96, 102, 108, 114, 155
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	3 cut(s)	212, 674, 742
SfcI	CTRYAG	2 cut(s)	354, 934
SfoI	GGCGCC	1 cut(s)	93
SpeI	ACTAGT	2 cut(s)	137, 422
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	6 cut(s)	149, 210, 260, 303, 514, 542
SspDI	GGCGCC	1 cut(s)	91
SspI	AATATT	2 cut(s)	406, 850
SspMI	CTAG	7 cut(s)	138, 411, 423, 555, 609, 621, 949
StyD4I	CCNGG	5 cut(s)	94, 100, 106, 112, 153
StyI	CCWWGG	3 cut(s)	9, 564, 647
TaaI	ACNGT	3 cut(s)	56, 439, 785
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	146, 444
TasI	AATT	6 cut(s)	149, 210, 260, 303, 514, 542
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	2 cut(s)	192, 486
Tru9I	TTAA	2 cut(s)	192, 486
TscAI	CASTG	3 cut(s)	61, 363, 606
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	5 cut(s)	592, 605, 617, 739, 933
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	515, 778, 824
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	3 cut(s)	61, 363, 606
XapI	RAATTY	3 cut(s)	149, 303, 514
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	2 cut(s)	363, 444
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	7 cut(s)	138, 411, 423, 555, 609, 621, 949
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.