Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010818

Physical Location & Seq

Genomic Coordinates Reverse (-)

390309 .. 393920

Gene Structure 3612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCATGCCAAGGGGACACAATCGTCTTTTCGGGATCGGACGCAGGAGTTCCACAGTGTAGCAGAGAGGCTAAAGAAGTCATTCTCGTCGGCGCCGGGGCCGGGGCCGTCGCAGAATGGCCCGACTAGTGGATCGAAATTCCAGGAACAACAATCGGCCGTGGCGACTCACTCCGAGTTTAATAAGAGGGCATCCAAAATTGGATTGGGAATACACTCCACGTCGCAGAAGCTTGGAAAGCTGACAAAATTGGCGAAGAGGACTTCTGTTTTTGATGATCCTACAAGGGAAATTCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACCGCACTCAACTCTGCAGTGGTAGACCTTCAGCTCCTATCTCATTCAAGAAATGAAAGTGGGAATATTTCTAGTGACACGACTAGTCATTCAACCACAGTTGTCGACGACCTGAAAAATCGGCTTATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGAACTGAGAATTTGAAGGTTCATGAGAATAGAAGACAATTGTTTTCGTCTAGTGCCTCCAAGGAATCCACAAATCCTTTTGTTCGGCAGCGCCCACTGGCTGCTAGGTCAGCTGCTAGTTCTTCAAGTGCCTCTCCTCCTCCATGGGCTAATGGATCAGCATCTTCCTCGCAGTTGTTCCCAAAGAAGGAGATAGATGGGGAGAGTCAACCATTGCTCCAGCAACAGCATCAGCAGCAACAGCAACAACAGGAGATGGTTCCATATCAAGACAGTTTCATGCAGAGTAGAGCTGAAGCTTTGCAAAATGTTGAGTCCACCATTCATGAGCTGAGTAATATTTTCAACCAGCTGGCGACATTGGTTTCTGAGCAAGGGGAAGTTGCCATCAGGATTGATGAGAACATGGAAGACACATTGGCAAATGTAGAGGGTGCACAAGGGCAACTGCTCAAGTATATGAATAGCATATCATCAAATAGGTGGCTGATGATCAAGATATTTTTTATATTAATTTTTTTCCTCATGATTTTCCTATTTTTTGTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

347

Amino Acids

38.65

Weight (kDa)

8.69

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin-5_N	PF11416	8 - 26	9.9e-07	Syntaxin-5 N-terminal, Sly1p-binding domain
SNARE	PF05739	292 - 343	2.2e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24350 AT3G24350
fragaria_vesca	FvH4_2g30200
malus_domestica	MD15G1114700.v1.1 MD15G1114800.v1.1 MD15G1190200.v1.1
prunus_persica	Prupe.1G466200_v2.0.a1 Prupe.1G466200_v2.0.a1 Prupe.7G226900_v2.0.a1
pyrus_communis	pycom15g10340
rosa_chinensis	RchiOBHm_Chr6g0312681
rosa_laevigata	RLG00000010304
rosa_multiflora	Rmu_sc0002859.1_g000001 Rmu_ssc0000412.1_g000010
rosa_roxburghii	Rroxscaffold_7G00156570
rosa_samantha	Rh6AG515700 Rh6BG527200 Rh6CG532100 Rh6DG518100
rosa_wichuraiana	Rw6G044810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	351, 432
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	4 cut(s)	42, 139, 272, 655
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	137, 291, 502
AcuI	CTGAAG	2 cut(s)	341, 807
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	101, 128, 679
AgsI	TTSAA	5 cut(s)	375, 420, 508, 618, 838
AhlI	ACTAGT	2 cut(s)	125, 410
AjiI	CACGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	9 cut(s)	232, 241, 301, 361, 605, 785, 791, 823, 844
AluI	AGCT	9 cut(s)	232, 241, 301, 361, 605, 785, 791, 823, 844
Alw21I	GWGCWC	2 cut(s)	461, 931
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	4 cut(s)	42, 139, 272, 655
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	4 cut(s)	98, 104, 118, 156
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	4 cut(s)	580, 593, 605, 727
ApoI	RAATTY	3 cut(s)	137, 291, 502
AseI	ATTAAT	1 cut(s)	1004
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	94, 585
AspS9I	GGNCC	3 cut(s)	98, 104, 119
AsuC2I	CCSGG	2 cut(s)	96, 102
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	931
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	2 cut(s)	532, 909
Bbv12I	GWGCWC	2 cut(s)	461, 931
BbvI	GCAGC	4 cut(s)	580, 592, 592, 739
BccI	CCATC	3 cut(s)	683, 742, 887
BceAI	ACGGC	2 cut(s)	91, 143
BcgI	CGANNNNNNTGC	2 cut(s)	642, 676
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	984
BcnI	CCSGG	2 cut(s)	96, 102
BcuI	ACTAGT	2 cut(s)	125, 410
BfaI	CTAG	6 cut(s)	126, 399, 411, 543, 597, 609
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	2 cut(s)	95, 586
BisI	GCNGC	4 cut(s)	581, 594, 606, 728
BlsI	GCNGC	4 cut(s)	582, 595, 607, 729
Bme1390I	CCNGG	3 cut(s)	96, 102, 143
BmgBI	CACGTC	1 cut(s)	222
BmgT120I	GGNCC	3 cut(s)	98, 104, 119
BmiI	GGNNCC	4 cut(s)	93, 99, 105, 753
BmrFI	CCNGG	3 cut(s)	96, 102, 143
BmsI	GCATC	3 cut(s)	200, 662, 730
BpiI	GAAGAC	2 cut(s)	532, 909
BpmI	CTGGAG	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	2 cut(s)	96, 102
BsaBI	GATNNNNATC	1 cut(s)	652
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	6 cut(s)	9, 95, 101, 159, 552, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 128, 679
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	704
Bse8I	GATNNNNATC	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	6 cut(s)	9, 95, 101, 159, 552, 635
BseGI	GGATG	1 cut(s)	191
BseJI	GATNNNNATC	1 cut(s)	652
BseLI	CCNNNNNNNGG	3 cut(s)	101, 128, 679
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	3 cut(s)	489, 815, 852
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	2 cut(s)	618, 621
BseSI	GKGCMC	1 cut(s)	931
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	580, 592, 592, 739
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	100, 106, 120, 158
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	461, 931
BsiSI	CCGG	2 cut(s)	95, 101
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	101, 128, 679
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	4 cut(s)	100, 106, 120, 158
Bsp1286I	GDGCHC	2 cut(s)	461, 931
Bsp143I	GATC	5 cut(s)	34, 131, 277, 647, 984
Bsp19I	CCATGG	1 cut(s)	635
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	4 cut(s)	100, 106, 120, 158
BspCNI	CTCAG	3 cut(s)	490, 816, 853
BspHI	TCATGA	3 cut(s)	514, 817, 1017
BspLI	GGNNCC	4 cut(s)	93, 99, 105, 753
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	4 cut(s)	42, 139, 272, 655
BspT107I	GGYRCC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	6 cut(s)	9, 95, 101, 159, 552, 635
BssMI	GATC	5 cut(s)	34, 131, 277, 647, 984
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	3 cut(s)	9, 552, 635
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	56, 427, 767
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	6, 846
BstDEI	CTNAG	3 cut(s)	498, 824, 861
BstDSI	CCRYGG	2 cut(s)	159, 635
BstF5I	GGATG	1 cut(s)	191
BstH2I	RGCGCY	2 cut(s)	95, 586
BstHHI	GCGC	2 cut(s)	94, 585
BstKTI	GATC	5 cut(s)	37, 134, 280, 650, 987
BstMBI	GATC	5 cut(s)	34, 131, 277, 647, 984
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 602, 727, 733
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	94, 100, 141
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	931
BstV1I	GCAGC	4 cut(s)	580, 592, 592, 739
BstV2I	GAAGAC	2 cut(s)	532, 909
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	100, 106, 120, 158
BtgI	CCRYGG	2 cut(s)	159, 635
BtrI	CACGTC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	61, 351, 587
Cac8I	GCNNGC	2 cut(s)	6, 846
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	3 cut(s)	514, 817, 1017
CfoI	GCGC	2 cut(s)	94, 585
Cfr13I	GGNCC	3 cut(s)	98, 104, 119
CseI	GACGC	1 cut(s)	49
CviAII	CATG	8 cut(s)	5, 490, 515, 636, 772, 818, 898, 1018
DdeI	CTNAG	3 cut(s)	498, 824, 861
DinI	GGCGCC	1 cut(s)	93
DpnI	GATC	5 cut(s)	36, 133, 279, 649, 986
DpnII	GATC	5 cut(s)	34, 131, 277, 647, 984
DraI	TTTAAA	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	3 cut(s)	9, 552, 635
Eco52I	CGGCCG	1 cut(s)	156
Eco57I	CTGAAG	2 cut(s)	341, 807
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	3 cut(s)	9, 552, 635
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	93
EheI	GGCGCC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	9, 552, 635
FaeI	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	8 cut(s)	4, 489, 514, 635, 771, 817, 897, 1017
FbaI	TGATCA	1 cut(s)	984
FblI	GTMKAC	2 cut(s)	351, 432
Fnu4HI	GCNGC	4 cut(s)	581, 594, 606, 728
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	581, 594, 606, 728
FspBI	CTAG	6 cut(s)	126, 399, 411, 543, 597, 609
GlaI	GCGC	2 cut(s)	93, 584
GluI	GCNGC	4 cut(s)	581, 594, 606, 728
GsuI	CTGGAG	1 cut(s)	695
HaeII	RGCGCY	2 cut(s)	95, 586
HaeIII	GGCC	4 cut(s)	100, 106, 120, 158
HapII	CCGG	2 cut(s)	95, 101
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	94, 585
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
Hin6I	GCGC	2 cut(s)	92, 583
HinP1I	GCGC	2 cut(s)	92, 583
HincII	GTYRAC	2 cut(s)	433, 701
HindII	GTYRAC	2 cut(s)	433, 701
HindIII	AAGCTT	2 cut(s)	230, 789
HinfI	GANTC	4 cut(s)	166, 557, 697, 806
HpaII	CCGG	2 cut(s)	95, 101
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	5 cut(s)	352, 433, 701, 810, 929
Hpy188I	TCNGA	3 cut(s)	39, 175, 862
Hpy188III	TCNNGA	9 cut(s)	32, 296, 375, 515, 761, 818, 883, 988, 1018
Hpy8I	GTNNAC	5 cut(s)	352, 433, 701, 810, 929
Hpy99I	CGWCG	4 cut(s)	91, 112, 226, 437
HpyAV	CCTTC	3 cut(s)	365, 502, 673
HpyCH4III	ACNGT	3 cut(s)	56, 427, 767
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	5 cut(s)	4, 344, 775, 796, 929
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 602, 727, 733
HpyF3I	CTNAG	3 cut(s)	498, 824, 861
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
HspAI	GCGC	2 cut(s)	92, 583
KasI	GGCGCC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	984
Kzo9I	GATC	5 cut(s)	34, 131, 277, 647, 984
LmnI	GCTCC	3 cut(s)	298, 366, 714
Lsp1109I	GCAGC	4 cut(s)	580, 592, 592, 739
LweI	GCATC	3 cut(s)	200, 662, 730
MaeI	CTAG	6 cut(s)	126, 399, 411, 543, 597, 609
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	5 cut(s)	36, 133, 279, 649, 986
MboI	GATC	5 cut(s)	34, 131, 277, 647, 984
MboII	GAAGA	5 cut(s)	268, 537, 606, 648, 914
MfeI	CAATTG	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	461, 931
MluCI	AATT	7 cut(s)	137, 198, 248, 291, 502, 530, 1005
Mly113I	GGCGCC	1 cut(s)	92
MlyI	GAGTC	3 cut(s)	160, 706, 815
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	3 cut(s)	180, 474, 1004
MspA1I	CMGCKG	2 cut(s)	605, 844
MspI	CCGG	2 cut(s)	95, 101
MspR9I	CCNGG	3 cut(s)	96, 102, 143
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	238, 602, 727, 733
NarI	GGCGCC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	96, 102
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	5 cut(s)	34, 131, 277, 647, 984
NlaIII	CATG	8 cut(s)	8, 493, 518, 639, 775, 821, 901, 1021
NlaIV	GGNNCC	4 cut(s)	93, 99, 105, 753
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	3 cut(s)	514, 817, 1017
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	557
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	582, 595, 607, 729
PleI	GAGTC	3 cut(s)	160, 705, 814
PluTI	GGCGCC	1 cut(s)	95
PpsI	GAGTC	3 cut(s)	160, 705, 814
PshBI	ATTAAT	1 cut(s)	1004
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	4 cut(s)	93, 99, 105, 753
PspPI	GGNCC	3 cut(s)	98, 104, 119
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	2 cut(s)	605, 844
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	180, 474, 1004
SatI	GCNGC	4 cut(s)	581, 594, 606, 728
Sau3AI	GATC	5 cut(s)	34, 131, 277, 647, 984
Sau96I	GGNCC	3 cut(s)	98, 104, 119
SchI	GAGTC	3 cut(s)	160, 706, 815
ScrFI	CCNGG	3 cut(s)	96, 102, 143
SduI	GDGCHC	2 cut(s)	461, 931
SfaNI	GCATC	3 cut(s)	200, 662, 730
SfcI	CTRYAG	1 cut(s)	342
SfoI	GGCGCC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SpeI	ACTAGT	2 cut(s)	125, 410
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	7 cut(s)	137, 198, 248, 291, 502, 530, 1005
SsiI	CCGC	1 cut(s)	330
SspDI	GGCGCC	1 cut(s)	91
SspI	AATATT	2 cut(s)	394, 832
SspMI	CTAG	6 cut(s)	126, 399, 411, 543, 597, 609
StyD4I	CCNGG	3 cut(s)	94, 100, 141
StyI	CCWWGG	3 cut(s)	9, 552, 635
TaaI	ACNGT	3 cut(s)	56, 427, 767
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	134, 432
TasI	AATT	7 cut(s)	137, 198, 248, 291, 502, 530, 1005
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	3 cut(s)	180, 474, 1004
Tru9I	TTAA	3 cut(s)	180, 474, 1004
TscAI	CASTG	3 cut(s)	61, 351, 594
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	4 cut(s)	580, 593, 605, 727
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	5 cut(s)	396, 503, 760, 806, 968
TspRI	CASTG	3 cut(s)	61, 351, 594
VneI	GTGCAC	1 cut(s)	927
VspI	ATTAAT	1 cut(s)	1004
XapI	RAATTY	3 cut(s)	137, 291, 502
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	2 cut(s)	351, 432
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	6 cut(s)	126, 399, 411, 543, 597, 609
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.