AT3G24535

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010815
Physical Location & Seq
Forward (+)
8951868 .. 8952761
894 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24535.1

Sequence Viewer

Length: 567 bp
ATGGTTCTTAGAAGCTCAATCTCCAACACAAGAAAACTCTTCCAAAAAACTATCGACAACTTCAAGTCATTCTTCTTCAACAACGGTACTTATCACAAACTACCAAAAACACCTAACAACACCTCTACCAATATTAATAATGATCATCCAAACTCCAACATCATCACATCATCATCATCATCCATACACAAGCAATTTCAACCTAAACCCAAAGACTATGTGACTACAAACAAAGCTTCGAGTCTACAACCGAGAATAGGAGACAGAGACGAGACACTCTTTTCCCAACCAAAGGTTAATCTAGTTCGTACAAAACTAAAGGAGATGGAGAAAATGATGAATGATGATATAATAAGTGATGAATATTATGTCTCAGATGTAATAGAATTTTTGCATTGCTACTCTCGTCTTCGTTACACTGCTTACCTCGACGTGGTTGAGAATTTTTTCATGGAGGTCTACTCTGATTTCTTTAGCCCTCATCATCTCGTGGGCACCCGAACGGCTGTACAAAGAAGGTATCCCGCGGTTGTTGGAATTGGATCGTACGGTGGCCATAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.77

Weight (kDa)

9.34

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24535
fragaria_vesca FvH4_1g04790
malus_domestica MD02G1046500.v1.1 MD15G1184700.v1.1
prunus_persica Prupe.7G231300_v2.0.a1
pyrus_communis pycom02g03900 pycom15g16620
rosa_chinensis RchiOBHm_Chr2g0090421
rosa_laevigata RLG00000016105 RLG00000016107
rosa_multiflora Rmu_sc0004514.1_g000014
rosa_roxburghii Rroxscaffold_2G00151170
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053300 Rh2BG052600 Rh2CG054400 Rh2CG054700 Rh2DG053300 Rh2DG053500
rosa_wichuraiana Rw2G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccI GTMKAC 2 cut(s) 244, 459
AccII CGCG 1 cut(s) 527
AciI CCGC 2 cut(s) 525, 527
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 2 cut(s) 386, 442
AfaI GTAC 4 cut(s) 88, 310, 510, 548
AfiI CCNNNNNNNGG 3 cut(s) 257, 292, 433
AgsI TTSAA 3 cut(s) 64, 79, 200
AjiI CACGTC 1 cut(s) 433
AluBI AGCT 2 cut(s) 15, 236
AluI AGCT 2 cut(s) 15, 236
Alw26I GTCTC 4 cut(s) 255, 261, 266, 376
AlwI GGATC 1 cut(s) 550
AoxI GGCC 1 cut(s) 553
ApoI RAATTY 2 cut(s) 386, 442
AseI ATTAAT 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 1 cut(s) 494
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 401
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 519
BciVI GTATCC 1 cut(s) 531
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 4 cut(s) 255, 261, 266, 376
BfaI CTAG 1 cut(s) 302
BfuI GTATCC 1 cut(s) 531
BmgBI CACGTC 1 cut(s) 433
BmiI GGNNCC 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BsaJI CCNNGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 292, 433
Bse3DI GCAATG 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 2 cut(s) 145, 179
BseLI CCNNNNNNNGG 3 cut(s) 257, 292, 433
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 1 cut(s) 555
BshNI GGYRCC 1 cut(s) 494
BsiWI CGTACG 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 257, 292, 433
BsmAI GTCTC 4 cut(s) 255, 261, 266, 376
BsmBI CGTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 497
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 142, 542
BspACI CCGC 2 cut(s) 525, 527
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 1 cut(s) 386
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 1 cut(s) 496
BspPI GGATC 1 cut(s) 550
BspT107I GGYRCC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 2 cut(s) 142, 542
BssSI CACGAG 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 86, 551
Bst6I CTCTTC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 8, 373
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 145, 179
BstFNI CGCG 1 cut(s) 527
BstKTI GATC 2 cut(s) 145, 545
BstMAI GTCTC 4 cut(s) 255, 261, 266, 376
BstMBI GATC 2 cut(s) 142, 542
BstSLI GKGCMC 1 cut(s) 497
BstUI CGCG 1 cut(s) 527
BstV2I GAAGAC 1 cut(s) 401
BsuI GTATCC 1 cut(s) 531
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 525
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 2 cut(s) 145, 179
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cfr42I CCGCGG 1 cut(s) 528
Csp6I GTAC 4 cut(s) 87, 309, 509, 547
CviAII CATG 1 cut(s) 451
CviJI RGCY 5 cut(s) 15, 236, 477, 506, 555
CviKI_1 RGCY 5 cut(s) 15, 236, 477, 506, 555
CviQI GTAC 4 cut(s) 87, 309, 509, 547
DdeI CTNAG 2 cut(s) 8, 373
DpnI GATC 2 cut(s) 144, 544
DpnII GATC 2 cut(s) 142, 542
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 1 cut(s) 454
FaiI YATR 6 cut(s) 185, 219, 350, 369, 452, 558
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 1 cut(s) 450
FauI CCCGC 1 cut(s) 532
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 2 cut(s) 244, 459
FokI GGATG 2 cut(s) 132, 166
FspBI CTAG 1 cut(s) 302
HaeIII GGCC 1 cut(s) 555
Hin1II CATG 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 245, 460
Hpy188I TCNGA 2 cut(s) 376, 466
Hpy8I GTNNAC 2 cut(s) 245, 460
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 2 cut(s) 86, 551
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 1 cut(s) 394
HpyF3I CTNAG 2 cut(s) 8, 373
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 142
KspI CCGCGG 1 cut(s) 528
Kzo9I GATC 2 cut(s) 142, 542
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 2 cut(s) 220, 413
MalI GATC 2 cut(s) 144, 544
MboI GATC 2 cut(s) 142, 542
MboII GAAGA 4 cut(s) 31, 64, 67, 401
MhlI GDGCHC 1 cut(s) 497
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 4 cut(s) 194, 386, 442, 537
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 3 cut(s) 48, 180, 514
MnlI CCTC 4 cut(s) 133, 437, 448, 489
Mox20I TGGCCA 1 cut(s) 555
MroXI GAANNNNTTC 1 cut(s) 446
MscI TGGCCA 1 cut(s) 555
MseI TTAA 2 cut(s) 135, 297
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 527
MvnI CGCG 1 cut(s) 527
NdeII GATC 2 cut(s) 142, 542
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 446
Pfl23II CGTACG 1 cut(s) 546
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 135
PspLI CGTACG 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 496
RsaI GTAC 4 cut(s) 88, 310, 510, 548
RsaNI GTAC 4 cut(s) 87, 309, 509, 547
SacII CCGCGG 1 cut(s) 528
SaqAI TTAA 2 cut(s) 135, 297
Sau3AI GATC 2 cut(s) 142, 542
SchI GAGTC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 497
Sfr303I CCGCGG 1 cut(s) 528
SgrBI CCGCGG 1 cut(s) 528
Sse9I AATT 4 cut(s) 194, 386, 442, 537
SsiI CCGC 2 cut(s) 525, 527
SspI AATATT 2 cut(s) 133, 365
SspMI CTAG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 86, 551
TaiI ACGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 54, 239, 429
TasI AATT 4 cut(s) 194, 386, 442, 537
TatI WGTACW 1 cut(s) 508
Tru1I TTAA 2 cut(s) 135, 297
Tru9I TTAA 2 cut(s) 135, 297
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 353, 375, 439
TspRI CASTG 1 cut(s) 424
VspI ATTAAT 1 cut(s) 135
XapI RAATTY 2 cut(s) 386, 442
XmiI GTMKAC 2 cut(s) 244, 459
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.