pycom02g03900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010815
Physical Location & Seq
Forward (+)
2583001 .. 2584376
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03900.2

Sequence Viewer

Length: 825 bp
ATGACTCTTTTATACTTTATTAATAAGAGGTATGTGTATAAGATCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTTTTCATTTATTAAAACACACCACAAGCTGCCGCCAATGTTGCTTAGGAGCTCCATTTACCACACCAAGAAGTTCTTCCAGAAAACCCTAGGGAGCTTGAAGAACTTCTTCTCTGACGGAAGCTACCAAAAGCTCCCAAAATCCCCCACTTTCCACAGCTACGACAACCCCTTTCCCCATGCTTCTGCTTCTACTTCTGTTTCTGTCGTTGACAACATGAATAATCTCCACGCCACAACATACAAAGACTTGGACAAGTTGTACACCGACTTCACAGACCAATGGGATTCAAAAATCGAAAACATCAGGCGATCGACGAACAAGAAGAAACATCCCTCCACACCCGCCAAATCACAACATCTTCATAAAGATCATGTTCAAAACCCTTCAAGCTTATCTCCACGGCCACTCAATTCACATCCTGCAGCTGCAGGTTCTCCTCCTGCAAAGATTGAAGCCTTTTCAAAGGAATCGAGGGCCGTGGGAAGGGGTTGTTTGGTGGAACAGAAGCTGAAGGAGTTGGAGATGTTGGACGTGAGCAATGTAGATCATGTTTTGGACATCGAAGAGGTTCTTCATTATTATTCTAGACTCACTTGTCCTGCCTATTTAGAAATTGTGGAAAAGTTTTTCATGGAAATGTATTCGGAGTTTTTCTCTCCGGCAGCCGCAACTCCGGCACGCAGCGTCAATTCTGGCCTGAGGCCGAGGCCTGTGAGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

31.1

Weight (kDa)

9.5

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24535
fragaria_vesca FvH4_1g04790
malus_domestica MD02G1046500.v1.1 MD15G1184700.v1.1
prunus_persica Prupe.7G231300_v2.0.a1
pyrus_communis pycom02g03900 pycom15g16620
rosa_chinensis RchiOBHm_Chr2g0090421
rosa_laevigata RLG00000016105 RLG00000016107
rosa_multiflora Rmu_sc0004514.1_g000014
rosa_roxburghii Rroxscaffold_2G00151170
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053300 Rh2BG052600 Rh2CG054400 Rh2CG054700 Rh2DG053300 Rh2DG053500
rosa_wichuraiana Rw2G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 696
Acc36I ACCTGC 1 cut(s) 521
AciI CCGC 3 cut(s) 131, 444, 768
AcoI YGGCCR 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 585
AgsI TTSAA 6 cut(s) 199, 390, 479, 489, 554, 564
AjiI CACGTC 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 9 cut(s) 127, 150, 195, 222, 232, 258, 492, 527, 610
AluI AGCT 9 cut(s) 127, 150, 195, 222, 232, 258, 492, 527, 610
Alw21I GWGCWC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 610
AoxI GGCC 5 cut(s) 503, 576, 796, 803, 809
ApeKI GCWGC 5 cut(s) 127, 524, 527, 764, 783
AseI ATTAAT 1 cut(s) 21
Asp700I GAANNNNTTC 4 cut(s) 173, 203, 206, 669
AspA2I CCTAGG 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 576, 819
AvaII GGWCC 1 cut(s) 819
AvrII CCTAGG 1 cut(s) 187
AxyI CCTNAGG 1 cut(s) 800
BanII GRGCYC 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 5 cut(s) 114, 514, 536, 776, 795
BceAI ACGGC 2 cut(s) 518, 563
BfaI CTAG 2 cut(s) 188, 687
BfmI CTRYAG 2 cut(s) 522, 528
BfuAI ACCTGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 42
BisI GCNGC 7 cut(s) 128, 131, 525, 528, 765, 768, 784
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 7 cut(s) 129, 132, 526, 529, 766, 769, 785
Bme18I GGWCC 1 cut(s) 819
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 576, 819
BplI GAGNNNNNCTC 2 cut(s) 740, 772
Bpu10I CCTNAGC 1 cut(s) 143
BsaJI CCNNGG 4 cut(s) 187, 500, 579, 806
Bsc4I CCNNNNNNNGG 1 cut(s) 585
Bse21I CCTNAGG 1 cut(s) 800
Bse3DI GCAATG 1 cut(s) 646
BseDI CCNNGG 4 cut(s) 187, 500, 579, 806
BseGI GGATG 2 cut(s) 430, 517
BseLI CCNNNNNNNGG 1 cut(s) 585
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 791
BseRI GAGGAG 3 cut(s) 49, 70, 528
BseXI GCAGC 5 cut(s) 114, 514, 536, 776, 795
Bsh1285I CGRYCG 1 cut(s) 413
BshFI GGCC 5 cut(s) 505, 578, 798, 805, 811
BsiEI CGRYCG 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 761, 776
BslI CCNNNNNNNGG 1 cut(s) 585
BsnI GGCC 5 cut(s) 505, 578, 798, 805, 811
Bsp1286I GDGCHC 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 4 cut(s) 42, 410, 469, 646
BspACI CCGC 3 cut(s) 131, 444, 768
BspANI GGCC 5 cut(s) 505, 578, 798, 805, 811
BspCNI CTCAG 1 cut(s) 792
BspMAI CTGCAG 2 cut(s) 526, 532
BspMI ACCTGC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 646
BsrGI TGTACA 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 187, 500, 579, 806
BssMI GATC 4 cut(s) 42, 410, 469, 646
BssT1I CCWWGG 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 660
BstAUI TGTACA 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 2 cut(s) 143, 800
BstDSI CCRYGG 2 cut(s) 500, 579
BstF5I GGATG 2 cut(s) 430, 517
BstKTI GATC 4 cut(s) 45, 413, 472, 649
BstMBI GATC 4 cut(s) 42, 410, 469, 646
BstMCI CGRYCG 1 cut(s) 413
BstMWI GCNNNNNNNGC 2 cut(s) 139, 776
BstSFI CTRYAG 2 cut(s) 522, 528
BstV1I GCAGC 5 cut(s) 114, 514, 536, 776, 795
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 800
BsuRI GGCC 5 cut(s) 505, 578, 798, 805, 811
BtgI CCRYGG 2 cut(s) 500, 579
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 2 cut(s) 430, 517
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 781
CaiI CAGNNNCTG 1 cut(s) 610
Cfr13I GGNCC 2 cut(s) 576, 819
CseI GACGC 1 cut(s) 775
Csp6I GTAC 1 cut(s) 361
CviAII CATG 5 cut(s) 278, 316, 473, 650, 733
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 2 cut(s) 143, 800
DpnI GATC 4 cut(s) 44, 412, 471, 648
DpnII GATC 4 cut(s) 42, 410, 469, 646
DrdI GACNNNNNNGTC 1 cut(s) 696
DseDI GACNNNNNNGTC 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 811
Eco24I GRGCYC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 632
Eco81I CCTNAGG 1 cut(s) 800
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 5 cut(s) 281, 319, 476, 653, 736
FalI AAGNNNNNCTT 6 cut(s) 158, 190, 191, 223, 657, 689
FatI CATG 5 cut(s) 277, 315, 472, 649, 732
FauI CCCGC 1 cut(s) 451
Fnu4HI GCNGC 7 cut(s) 128, 131, 525, 528, 765, 768, 784
FokI GGATG 2 cut(s) 417, 504
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 7 cut(s) 128, 131, 525, 528, 765, 768, 784
FspBI CTAG 2 cut(s) 188, 687
GluI GCNGC 7 cut(s) 128, 131, 525, 528, 765, 768, 784
HaeIII GGCC 5 cut(s) 505, 578, 798, 805, 811
HapII CCGG 2 cut(s) 761, 776
HgaI GACGC 1 cut(s) 775
Hin1II CATG 5 cut(s) 281, 319, 476, 653, 736
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 490
HinfI GANTC 4 cut(s) 4, 386, 569, 690
HpaII CCGG 2 cut(s) 761, 776
Hpy166II GTNNAC 2 cut(s) 310, 363
Hpy188I TCNGA 2 cut(s) 214, 748
Hpy188III TCNNGA 2 cut(s) 178, 687
Hpy8I GTNNAC 2 cut(s) 310, 363
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 3 cut(s) 495, 579, 607
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 3 cut(s) 524, 530, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 776
HpyF3I CTNAG 2 cut(s) 143, 800
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 5 cut(s) 281, 319, 476, 653, 736
Kzo9I GATC 4 cut(s) 42, 410, 469, 646
LmnI GCTCC 4 cut(s) 147, 155, 192, 237
Lsp1109I GCAGC 5 cut(s) 114, 514, 536, 776, 795
MaeI CTAG 2 cut(s) 188, 687
MaeII ACGT 1 cut(s) 633
MalI GATC 4 cut(s) 44, 412, 471, 648
MboI GATC 4 cut(s) 42, 410, 469, 646
MboII GAAGA 7 cut(s) 166, 199, 211, 436, 452, 665, 677
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 3 cut(s) 511, 714, 790
MlyI GAGTC 1 cut(s) 684
MmeI TCCRAC 2 cut(s) 600, 609
MroXI GAANNNNTTC 4 cut(s) 173, 203, 206, 669
MseI TTAA 2 cut(s) 21, 111
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 2 cut(s) 761, 776
MwoI GCNNNNNNNGC 2 cut(s) 139, 776
NdeII GATC 4 cut(s) 42, 410, 469, 646
NlaIII CATG 5 cut(s) 281, 319, 476, 653, 736
PceI AGGCCT 1 cut(s) 811
PdmI GAANNNNTTC 4 cut(s) 173, 203, 206, 669
PfeI GAWTC 2 cut(s) 386, 569
PkrI GCNGC 7 cut(s) 129, 132, 526, 529, 766, 769, 785
Ple19I CGATCG 1 cut(s) 413
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
PpuMI RGGWCCY 1 cut(s) 819
PshBI ATTAAT 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 819
PspPI GGNCC 2 cut(s) 576, 819
PspPPI RGGWCCY 1 cut(s) 819
PstI CTGCAG 2 cut(s) 526, 532
PstNI CAGNNNCTG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 42
PvuI CGATCG 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 737
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 21, 111
SatI GCNGC 7 cut(s) 128, 131, 525, 528, 765, 768, 784
Sau3AI GATC 4 cut(s) 42, 410, 469, 646
Sau96I GGNCC 2 cut(s) 576, 819
SchI GAGTC 1 cut(s) 684
SduI GDGCHC 1 cut(s) 152
SfcI CTRYAG 2 cut(s) 522, 528
SinI GGWCC 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 737
Sse9I AATT 3 cut(s) 511, 714, 790
SseBI AGGCCT 1 cut(s) 811
SsiI CCGC 3 cut(s) 131, 444, 768
SspMI CTAG 2 cut(s) 188, 687
SstI GAGCTC 1 cut(s) 152
StuI AGGCCT 1 cut(s) 811
StyI CCWWGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 636
TaqI TCGA 4 cut(s) 396, 413, 572, 663
TasI AATT 3 cut(s) 511, 714, 790
TatI WGTACW 1 cut(s) 360
TauI GCSGC 2 cut(s) 133, 770
TfiI GAWTC 2 cut(s) 386, 569
Tru1I TTAA 2 cut(s) 21, 111
Tru9I TTAA 2 cut(s) 21, 111
TseI GCWGC 5 cut(s) 127, 524, 527, 764, 783
TspDTI ATGAA 5 cut(s) 93, 332, 452, 665, 721
TspGWI ACGGA 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 819
VspI ATTAAT 1 cut(s) 21
XbaI TCTAGA 1 cut(s) 686
XmaJI CCTAGG 1 cut(s) 187
XmnI GAANNNNTTC 4 cut(s) 173, 203, 206, 669
XspI CTAG 2 cut(s) 188, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.