MD15G1184700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010815
Physical Location & Seq
Forward (+)
14570667 .. 14571344
678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1184700.v1.1.491

Sequence Viewer

Length: 678 bp
ATGTTGCTTAGAAGCTCCATTTCCCACACCAAGAAGTTCTTCCAGAAAACCCTTGGGAACTTGAAGAACTTCTTCTCCGCAAGAGACTACGAAAAGCTCCCAAAATCCCCTACTCACTACAACAACCCTTTTCCCTATGCTTCTGCTTCTATTTCTGCGGTTGACAACATGAATCATCTCCACGCCACAACATACAAAGACTTGGACAAGTTGTATACCGACTTCACGGACCAATGGGATGCGAAAATCGAAAGCATCAGGGGATCATCGAACAAGAAGAAACTTCTCTCCACACCTACCAAACCACAACATCTTCATAAAGATCATGTTCAAAACCCTGCAGGCTTGTCTCCACGACCACTCAATGCACACCCTGCAGCTGCAAGTACTCCTCCTGCAAAGATTGAAACTTTTGTGAAGGAATCAAGGGCGGTGGGAACGGGTTGTTTGCTGGAACATAAGCTGAAGGAGTTGGAGATGTTGGACATGAGCAATGTGGATCATGTTTTGGACATCGAAGAGGTTCTTCATTATTATTCTAAACTCACTTGTCCTGCCTATTTAGAAATTGTGGACAAGTTTTTCATGGACATGTATTCGGAGTTTTTTGCTCCGACAGCAGCAACTCCGGCACGCAGCATCAATTCAAGCCTGCGGCCGAGGTCCGTGTGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.51

Weight (kDa)

8.9

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24535
fragaria_vesca FvH4_1g04790
malus_domestica MD02G1046500.v1.1 MD15G1184700.v1.1
prunus_persica Prupe.7G231300_v2.0.a1
pyrus_communis pycom02g03900 pycom15g16620
rosa_chinensis RchiOBHm_Chr2g0090421
rosa_laevigata RLG00000016105 RLG00000016107
rosa_multiflora Rmu_sc0004514.1_g000014
rosa_roxburghii Rroxscaffold_2G00151170
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053300 Rh2BG052600 Rh2CG054400 Rh2CG054700 Rh2DG053300 Rh2DG053500
rosa_wichuraiana Rw2G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 215
AciI CCGC 4 cut(s) 78, 158, 431, 655
AclWI GGATC 2 cut(s) 271, 507
AcoI YGGCCR 1 cut(s) 656
AcuI CTGAAG 1 cut(s) 485
AfaI GTAC 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 4 cut(s) 64, 332, 407, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 15, 97, 380, 463
AluI AGCT 4 cut(s) 15, 97, 380, 463
Alw26I GTCTC 2 cut(s) 78, 354
AlwI GGATC 2 cut(s) 271, 507
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 4 cut(s) 377, 380, 620, 636
Asp700I GAANNNNTTC 4 cut(s) 38, 68, 71, 522
AspS9I GGNCC 3 cut(s) 229, 663, 672
AvaII GGWCC 3 cut(s) 229, 663, 672
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbvI GCAGC 4 cut(s) 367, 389, 632, 648
BcoDI GTCTC 2 cut(s) 78, 354
BfmI CTRYAG 2 cut(s) 339, 375
BisI GCNGC 5 cut(s) 378, 381, 621, 637, 656
BlsI GCNGC 5 cut(s) 379, 382, 622, 638, 657
BmcAI AGTACT 1 cut(s) 388
Bme18I GGWCC 3 cut(s) 229, 663, 672
BmgT120I GGNCC 3 cut(s) 229, 663, 672
BmsI GCATC 3 cut(s) 229, 264, 648
BsaJI CCNNGG 2 cut(s) 52, 659
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse3DI GCAATG 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 52, 659
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 499
BseRI GAGGAG 1 cut(s) 381
BseX3I CGGCCG 1 cut(s) 656
BseXI GCAGC 4 cut(s) 367, 389, 632, 648
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 1 cut(s) 658
BsiEI CGRYCG 1 cut(s) 659
BsiSI CCGG 1 cut(s) 629
BsmAI GTCTC 2 cut(s) 78, 354
BsnI GGCC 1 cut(s) 658
Bsp143I GATC 3 cut(s) 263, 322, 499
BspACI CCGC 4 cut(s) 78, 158, 431, 655
BspANI GGCC 1 cut(s) 658
BspMAI CTGCAG 2 cut(s) 343, 379
BspPI GGATC 2 cut(s) 271, 507
BsrDI GCAATG 1 cut(s) 499
BssECI CCNNGG 2 cut(s) 52, 659
BssMI GATC 3 cut(s) 263, 322, 499
BssNAI GTATAC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 52
Bst1107I GTATAC 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 343, 634, 653
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 3 cut(s) 266, 325, 502
BstMAI GTCTC 2 cut(s) 78, 354
BstMBI GATC 3 cut(s) 263, 322, 499
BstMCI CGRYCG 1 cut(s) 659
BstMWI GCNNNNNNNGC 3 cut(s) 374, 617, 629
BstNSI RCATGY 1 cut(s) 595
BstSFI CTRYAG 2 cut(s) 339, 375
BstV1I GCAGC 4 cut(s) 367, 389, 632, 648
BstZ17I GTATAC 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 656
BsuRI GGCC 1 cut(s) 658
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 3 cut(s) 343, 634, 653
Cfr13I GGNCC 3 cut(s) 229, 663, 672
Csp6I GTAC 1 cut(s) 387
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 6 cut(s) 169, 326, 487, 503, 586, 592
CviJI RGCY 7 cut(s) 15, 97, 345, 380, 463, 651, 658
CviKI_1 RGCY 7 cut(s) 15, 97, 345, 380, 463, 651, 658
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 1 cut(s) 8
DpnI GATC 3 cut(s) 265, 324, 501
DpnII GATC 3 cut(s) 263, 322, 499
EaeI YGGCCR 1 cut(s) 656
EagI CGGCCG 1 cut(s) 656
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EclXI CGGCCG 1 cut(s) 656
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 3 cut(s) 229, 663, 672
Eco52I CGGCCG 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 6 cut(s) 172, 329, 490, 506, 589, 595
FalI AAGNNNNNCTT 6 cut(s) 23, 55, 56, 88, 510, 542
FatI CATG 6 cut(s) 168, 325, 486, 502, 585, 591
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 5 cut(s) 378, 381, 621, 637, 656
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 378, 381, 621, 637, 656
GluI GCNGC 5 cut(s) 378, 381, 621, 637, 656
HaeIII GGCC 1 cut(s) 658
HapII CCGG 1 cut(s) 629
Hin1II CATG 6 cut(s) 172, 329, 490, 506, 589, 595
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 2 cut(s) 172, 422
HpaII CCGG 1 cut(s) 629
Hpy166II GTNNAC 3 cut(s) 163, 216, 574
Hpy188I TCNGA 2 cut(s) 601, 615
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 3 cut(s) 163, 216, 574
HpyAV CCTTC 2 cut(s) 412, 460
HpyCH4V TGCA 5 cut(s) 341, 368, 377, 383, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 617, 629
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 6 cut(s) 172, 329, 490, 506, 589, 595
Kzo9I GATC 3 cut(s) 263, 322, 499
LmnI GCTCC 3 cut(s) 20, 102, 616
Lsp1109I GCAGC 4 cut(s) 367, 389, 632, 648
LweI GCATC 3 cut(s) 229, 264, 648
MalI GATC 3 cut(s) 265, 324, 501
MboI GATC 3 cut(s) 263, 322, 499
MboII GAAGA 7 cut(s) 31, 64, 76, 289, 305, 518, 530
MluCI AATT 2 cut(s) 567, 643
MmeI TCCRAC 3 cut(s) 453, 462, 638
MnlI CCTC 3 cut(s) 402, 514, 654
MroXI GAANNNNTTC 4 cut(s) 38, 68, 71, 522
MslI CAYNNNNRTG 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 374, 617, 629
NdeII GATC 3 cut(s) 263, 322, 499
NlaIII CATG 6 cut(s) 172, 329, 490, 506, 589, 595
NspI RCATGY 1 cut(s) 595
PciI ACATGT 1 cut(s) 591
PdmI GAANNNNTTC 4 cut(s) 38, 68, 71, 522
PfeI GAWTC 2 cut(s) 172, 422
PkrI GCNGC 5 cut(s) 379, 382, 622, 638, 657
PscI ACATGT 1 cut(s) 591
PspPI GGNCC 3 cut(s) 229, 663, 672
PstI CTGCAG 2 cut(s) 343, 379
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 590
SatI GCNGC 5 cut(s) 378, 381, 621, 637, 656
Sau3AI GATC 3 cut(s) 263, 322, 499
Sau96I GGNCC 3 cut(s) 229, 663, 672
SbfI CCTGCAGG 1 cut(s) 343
ScaI AGTACT 1 cut(s) 388
SdaI CCTGCAGG 1 cut(s) 343
SetI ASST 7 cut(s) 17, 99, 298, 382, 465, 525, 665
SfaNI GCATC 3 cut(s) 229, 264, 648
SfcI CTRYAG 2 cut(s) 339, 375
SinI GGWCC 3 cut(s) 229, 663, 672
SmiMI CAYNNNNRTG 1 cut(s) 590
Sse8387I CCTGCAGG 1 cut(s) 343
Sse9I AATT 2 cut(s) 567, 643
SsiI CCGC 4 cut(s) 78, 158, 431, 655
StyI CCWWGG 1 cut(s) 52
TaqI TCGA 3 cut(s) 249, 269, 516
TasI AATT 2 cut(s) 567, 643
TatI WGTACW 1 cut(s) 386
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 2 cut(s) 172, 422
TseI GCWGC 4 cut(s) 377, 380, 620, 636
TspDTI ATGAA 4 cut(s) 185, 305, 518, 574
TspGWI ACGGA 2 cut(s) 242, 655
VpaK11BI GGWCC 3 cut(s) 229, 663, 672
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 215
XmnI GAANNNNTTC 4 cut(s) 38, 68, 71, 522
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.