RLG00000016105

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010815
Physical Location & Seq
Forward (+)
3934343 .. 3938880
4538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016105

Sequence Viewer

Length: 828 bp
ATGCATCGTCGAAGACATGAAGGCCAATGCCATGACCGTCGGAAAGTACTCCGTCGTCTACCTCGACGAAGGCCAGCCCTTGCCGCCCTCACACAAGCTCACCGTTCGGGTAGGCTTAGATTCAATTTCAAATTCCGAATTCCGAAATCACGGAATCAGGTTTCAGAGCCAACGAGATCCGATCCATCACTTGCCCGGAGCTCAGAGTCGTCCATCTCATCAATACGTAGCCGTTATCCAAACGACGACGGTTTCACATCGGAGGACGCTCAGATTGGGCGGATTTCCAGTTCTGAGAAGCGACAGGAGGATGGAGAAGAGCTCCGGGTCTCGATCGACGAACGGAGGAGGGAGGTAGAGGTGCTTACCTGCAGGATCAAGCAGCTTGGTCTATCCGGCCAGGTTCTCATCTCCCTTCCTAAGCCGCTTTGCTGGTTGGGTCGGGTCCTGCACCTGATCGGATCCTCGTCGGGCACGGGCAGAGGTTTGGGCGTGAGAGGACGGCAGCTGATTGATTCTAGGCCCCAGGCCCAGGCCTTTATGTCTATTATCAATGGGATAGAAAGAGACAAGCAACAACAAGAGATTAGTAATTTCCTCGCCCGCCAGCAAGATCGTAAAGTAATTCAAAGGAGAGATCACGAGGCATGTGATCGTAATAAGAAGGTGATGACAAAGAGAGTGGAGGAAAGTAGAACTACGTTTTCCAGTGAATTGAAAGAGCCGAAAGGGGGTTGTTTGGTAGCTGAGAATAAGTTGGAGGAGTTGGAGATGTTGAAGAGTGCACGGGGCCCTGACGGGTTTTGTGGTTCTGATAATGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.44

Weight (kDa)

10.32

Isoelectric Point (pI)

78.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24535
fragaria_vesca FvH4_1g04790
malus_domestica MD02G1046500.v1.1 MD15G1184700.v1.1
prunus_persica Prupe.7G231300_v2.0.a1
pyrus_communis pycom02g03900 pycom15g16620
rosa_chinensis RchiOBHm_Chr2g0090421
rosa_laevigata RLG00000016105 RLG00000016107
rosa_multiflora Rmu_sc0004514.1_g000014
rosa_roxburghii Rroxscaffold_2G00151170
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053300 Rh2BG052600 Rh2CG054400 Rh2CG054700 Rh2DG053300 Rh2DG053500
rosa_wichuraiana Rw2G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 58
AciI CCGC 4 cut(s) 84, 280, 425, 604
AclWI GGATC 5 cut(s) 171, 176, 383, 456, 469
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 2 cut(s) 131, 138
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 532, 731
AgsI TTSAA 5 cut(s) 124, 130, 629, 718, 778
AjnI CCWGG 3 cut(s) 399, 525, 531
AloI GAACNNNNNNTCC 2 cut(s) 274, 306
AluBI AGCT 6 cut(s) 98, 201, 322, 385, 508, 746
AluI AGCT 6 cut(s) 98, 201, 322, 385, 508, 746
Alw21I GWGCWC 3 cut(s) 203, 324, 787
Alw26I GTCTC 2 cut(s) 334, 561
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 5 cut(s) 171, 176, 383, 456, 469
AoxI GGCC 7 cut(s) 22, 71, 397, 521, 528, 534, 790
ApaI GGGCCC 1 cut(s) 794
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 2 cut(s) 382, 505
ApoI RAATTY 2 cut(s) 131, 138
AspS9I GGNCC 5 cut(s) 445, 522, 529, 790, 791
AsuC2I CCSGG 2 cut(s) 196, 326
AsuHPI GGTGA 2 cut(s) 92, 679
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 3 cut(s) 476, 787, 794
BamHI GGATCC 1 cut(s) 461
BanII GRGCYC 3 cut(s) 203, 324, 794
BauI CACGAG 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 3 cut(s) 203, 324, 787
BbvI GCAGC 2 cut(s) 394, 517
BccI CCATC 3 cut(s) 193, 221, 305
BceAI ACGGC 2 cut(s) 216, 518
BciT130I CCWGG 3 cut(s) 401, 527, 533
BcnI CCSGG 2 cut(s) 196, 326
BcoDI GTCTC 2 cut(s) 334, 561
BfaI CTAG 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 4 cut(s) 84, 383, 425, 506
BlsI GCNGC 4 cut(s) 85, 384, 426, 507
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 5 cut(s) 196, 326, 401, 527, 533
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 5 cut(s) 445, 522, 529, 790, 791
BmiI GGNNCC 5 cut(s) 446, 463, 524, 791, 792
BmrFI CCNGG 5 cut(s) 196, 326, 401, 527, 533
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 19
BplI GAGNNNNNCTC 2 cut(s) 306, 338
Bpu10I CCTNAGC 1 cut(s) 420
BpuMI CCSGG 2 cut(s) 196, 326
BsaAI YACGTR 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 525, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 731
Bse1I ACTGG 2 cut(s) 288, 708
BseBI CCWGG 3 cut(s) 401, 527, 533
BseDI CCNNGG 2 cut(s) 525, 531
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 532, 731
BseMII CTCAG 4 cut(s) 216, 284, 285, 738
BseNI ACTGG 2 cut(s) 288, 708
BseRI GAGGAG 2 cut(s) 361, 776
BseSI GKGCMC 3 cut(s) 476, 787, 794
BseXI GCAGC 2 cut(s) 394, 517
BsgI GTGCAG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 7 cut(s) 24, 73, 399, 523, 530, 536, 792
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 3 cut(s) 203, 324, 787
BsiSI CCGG 3 cut(s) 196, 325, 396
BslI CCNNNNNNNGG 2 cut(s) 532, 731
BsmAI GTCTC 2 cut(s) 334, 561
BsnI GGCC 7 cut(s) 24, 73, 399, 523, 530, 536, 792
Bso31I GGTCTC 1 cut(s) 334
Bsp120I GGGCCC 1 cut(s) 790
Bsp1286I GDGCHC 5 cut(s) 203, 324, 476, 787, 794
Bsp143I GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
BspACI CCGC 4 cut(s) 84, 280, 425, 604
BspANI GGCC 7 cut(s) 24, 73, 399, 523, 530, 536, 792
BspCNI CTCAG 4 cut(s) 215, 283, 286, 739
BspLI GGNNCC 5 cut(s) 446, 463, 524, 791, 792
BspMAI CTGCAG 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 5 cut(s) 171, 176, 383, 456, 469
BspQI GCTCTTC 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 334
BsrI ACTGG 2 cut(s) 288, 708
BssECI CCNNGG 2 cut(s) 525, 531
BssMI GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
BssSI CACGAG 1 cut(s) 641
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 3 cut(s) 401, 527, 533
Bst4CI ACNGT 3 cut(s) 38, 104, 251
Bst6I CTCTTC 2 cut(s) 312, 773
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 75, 604, 608
BstDEI CTNAG 6 cut(s) 116, 202, 270, 294, 420, 747
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 9 cut(s) 179, 184, 336, 378, 459, 464, 616, 640, 655
BstMAI GTCTC 2 cut(s) 334, 561
BstMBI GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 3 cut(s) 401, 527, 533
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 5 cut(s) 194, 324, 399, 525, 531
BstSFI CTRYAG 1 cut(s) 370
BstSLI GKGCMC 3 cut(s) 476, 787, 794
BstSNI TACGTA 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 394, 517
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 2 cut(s) 176, 461
BstYI RGATCY 2 cut(s) 176, 461
BsuRI GGCC 7 cut(s) 24, 73, 399, 523, 530, 536, 792
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 715
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 75, 604, 608
Cfr13I GGNCC 5 cut(s) 445, 522, 529, 790, 791
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 3 cut(s) 17, 32, 648
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 6 cut(s) 116, 202, 270, 294, 420, 747
DpnI GATC 9 cut(s) 178, 183, 335, 377, 458, 463, 615, 639, 654
DpnII GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 312, 773
EarI CTCTTC 2 cut(s) 312, 773
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 2 cut(s) 201, 322
Eco105I TACGTA 1 cut(s) 227
Eco147I AGGCCT 1 cut(s) 536
Eco24I GRGCYC 3 cut(s) 203, 324, 794
Eco31I GGTCTC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 445
Eco53kI GAGCTC 2 cut(s) 201, 322
EcoICRI GAGCTC 2 cut(s) 201, 322
EcoO109I RGGNCCY 4 cut(s) 445, 522, 790, 791
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 399, 525, 531
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 203, 324, 794
FaeI CATG 3 cut(s) 20, 35, 651
FaiI YATR 4 cut(s) 18, 33, 542, 649
FatI CATG 3 cut(s) 16, 31, 647
FauI CCCGC 1 cut(s) 611
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 84, 383, 425, 506
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 3 cut(s) 203, 324, 794
Fsp4HI GCNGC 4 cut(s) 84, 383, 425, 506
FspBI CTAG 1 cut(s) 519
GluI GCNGC 4 cut(s) 84, 383, 425, 506
HaeIII GGCC 7 cut(s) 24, 73, 399, 523, 530, 536, 792
HapII CCGG 3 cut(s) 196, 325, 396
HgaI GACGC 1 cut(s) 275
Hin1II CATG 3 cut(s) 20, 35, 651
HinfI GANTC 4 cut(s) 120, 154, 206, 515
HpaII CCGG 3 cut(s) 196, 325, 396
HphI GGTGA 2 cut(s) 92, 679
Hpy166II GTNNAC 2 cut(s) 59, 785
Hpy188III TCNNGA 2 cut(s) 331, 641
Hpy8I GTNNAC 2 cut(s) 59, 785
Hpy99I CGWCG 8 cut(s) 12, 42, 57, 69, 248, 251, 341, 472
HpyAV CCTTC 4 cut(s) 14, 63, 425, 658
HpyCH4III ACNGT 3 cut(s) 38, 104, 251
HpyCH4IV ACGT 2 cut(s) 226, 701
HpyCH4V TGCA 4 cut(s) 4, 372, 451, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 6 cut(s) 116, 202, 270, 294, 420, 747
HpySE526I ACGT 2 cut(s) 226, 701
Hsp92II CATG 3 cut(s) 20, 35, 651
Kzo9I GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 198, 327
Lsp1109I GCAGC 2 cut(s) 394, 517
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 519
MaeII ACGT 2 cut(s) 226, 701
MalI GATC 9 cut(s) 178, 183, 335, 377, 458, 463, 615, 639, 654
MboI GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
MboII GAAGA 3 cut(s) 24, 329, 790
MflI RGATCY 2 cut(s) 176, 461
MhlI GDGCHC 5 cut(s) 203, 324, 476, 787, 794
MluCI AATT 6 cut(s) 124, 131, 138, 592, 624, 713
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 3 cut(s) 20, 738, 747
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 3 cut(s) 196, 325, 396
MspR9I CCNGG 5 cut(s) 196, 326, 401, 527, 533
MvaI CCWGG 3 cut(s) 401, 527, 533
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 2 cut(s) 196, 326
NdeII GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
NlaIII CATG 3 cut(s) 20, 35, 651
NlaIV GGNNCC 5 cut(s) 446, 463, 524, 791, 792
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 651
PceI AGGCCT 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 3 cut(s) 120, 154, 515
PkrI GCNGC 4 cut(s) 85, 384, 426, 507
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 445
Psp124BI GAGCTC 2 cut(s) 203, 324
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 399, 525, 531
PspGI CCWGG 3 cut(s) 399, 525, 531
PspN4I GGNNCC 5 cut(s) 446, 463, 524, 791, 792
PspOMI GGGCCC 1 cut(s) 790
PspPI GGNCC 5 cut(s) 445, 522, 529, 790, 791
PspPPI RGGWCCY 1 cut(s) 445
PstI CTGCAG 1 cut(s) 374
PsuI RGATCY 2 cut(s) 176, 461
PvuI CGATCG 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SacI GAGCTC 2 cut(s) 203, 324
SapI GCTCTTC 1 cut(s) 312
SatI GCNGC 4 cut(s) 84, 383, 425, 506
Sau3AI GATC 9 cut(s) 176, 181, 333, 375, 456, 461, 613, 637, 652
Sau96I GGNCC 5 cut(s) 445, 522, 529, 790, 791
SbfI CCTGCAGG 1 cut(s) 374
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 5 cut(s) 196, 326, 401, 527, 533
SdaI CCTGCAGG 1 cut(s) 374
SduI GDGCHC 5 cut(s) 203, 324, 476, 787, 794
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 445
SnaBI TACGTA 1 cut(s) 227
Sse8387I CCTGCAGG 1 cut(s) 374
Sse9I AATT 6 cut(s) 124, 131, 138, 592, 624, 713
SseBI AGGCCT 1 cut(s) 536
SsiI CCGC 4 cut(s) 84, 280, 425, 604
SspMI CTAG 1 cut(s) 519
SstI GAGCTC 2 cut(s) 203, 324
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 5 cut(s) 194, 324, 399, 525, 531
TaaI ACNGT 3 cut(s) 38, 104, 251
TaiI ACGT 2 cut(s) 229, 704
TaqI TCGA 4 cut(s) 10, 64, 332, 336
TasI AATT 6 cut(s) 124, 131, 138, 592, 624, 713
TatI WGTACW 1 cut(s) 46
TauI GCSGC 2 cut(s) 86, 427
TfiI GAWTC 3 cut(s) 120, 154, 515
TscAI CASTG 1 cut(s) 715
TseI GCWGC 2 cut(s) 382, 505
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 3 cut(s) 41, 166, 358
TspRI CASTG 1 cut(s) 715
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 2 cut(s) 131, 138
XceI RCATGY 1 cut(s) 651
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 1 cut(s) 519
ZrmI AGTACT 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.