FvH4_1g04790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010815
Physical Location & Seq
Forward (+)
2526230 .. 2527610
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04790.t1

Sequence Viewer

Length: 654 bp
ATGCTGTTCAGAAATTCTATTTCCAGCACCAAGAGGTTTTTTAACAAAACCCTTGGCAACCTGAAGAACCTATTTTCTGCTGGTAGCTACCAGAAGCTACCCAAATCCCCTGCCATCTATAATGCCTACGGTACTTCTATGTCTGCTAGTACTACTGCTCATGTTCATGATATGAACATCCACAACACAAGCAGTTACAAAGACTTGGACAAGTTGTACAACGACTTGACAGATCAATGGGATAGCAAGAGACAAAGCAACAACAAGAGAGTAGTTATTTCACCACCCGCGCTGCAAGATCATAAAGTTGTTCGAAGGAGAGATCATGAGGCATGTGATTTAAACAACAAGGTGATGACAAAGAGAGTGGAGGAAAGTAGAACTGCGTTTTCAAGTGAAATGAAGGAGCCGAAAAGGGGTTGTTTGGTAGCTGAGAAGCTGAAGGAGTTGGAGATGTTGGATATAAGCAATGTGGATCATGTTCTGGATGTACAAGAAGTCTTTCATTACTACTCTCGCCTCACTTGCCCTGCCTATCTTGAAATTGTGGACAGGTTTTTCATGGAAATGTGTACTGAATTTCTCGGTCCAGCATCAACCCCAGGAAGAAGCAAGAGATCGAGGCTGAGGCCAAGGACTTCTTTGAGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

25.03

Weight (kDa)

9.49

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24535
fragaria_vesca FvH4_1g04790
malus_domestica MD02G1046500.v1.1 MD15G1184700.v1.1
prunus_persica Prupe.7G231300_v2.0.a1
pyrus_communis pycom02g03900 pycom15g16620
rosa_chinensis RchiOBHm_Chr2g0090421
rosa_laevigata RLG00000016105 RLG00000016107
rosa_multiflora Rmu_sc0004514.1_g000014
rosa_roxburghii Rroxscaffold_2G00151170
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053300 Rh2BG052600 Rh2CG054400 Rh2CG054700 Rh2DG053300 Rh2DG053500
rosa_wichuraiana Rw2G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 483
AcsI RAATTY 2 cut(s) 13, 578
AcuI CTGAAG 2 cut(s) 83, 461
AfaI GTAC 5 cut(s) 133, 151, 218, 492, 574
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 2 cut(s) 393, 542
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 4 cut(s) 87, 97, 431, 439
AluI AGCT 4 cut(s) 87, 97, 431, 439
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 483
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 2 cut(s) 13, 578
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 2 cut(s) 273, 364
AsuII TTCGAA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 587
BbvCI CCTCAGC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 1 cut(s) 602
Bpu10I CCTNAGC 1 cut(s) 626
Bpu14I TTCGAA 1 cut(s) 313
BsaJI CCNNGG 3 cut(s) 52, 601, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 3 cut(s) 52, 601, 632
BseGI GGATG 2 cut(s) 177, 493
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 2 cut(s) 423, 617
BseXI GCAGC 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 631
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 313
Bsp1407I TGTACA 2 cut(s) 216, 490
Bsp143I GATC 5 cut(s) 232, 298, 322, 475, 617
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 2 cut(s) 424, 618
BspFNI CGCG 1 cut(s) 290
BspHI TCATGA 2 cut(s) 166, 325
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 1 cut(s) 483
BspT104I TTCGAA 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 475
BsrGI TGTACA 2 cut(s) 216, 490
BssECI CCNNGG 3 cut(s) 52, 601, 632
BssMI GATC 5 cut(s) 232, 298, 322, 475, 617
BssT1I CCWWGG 2 cut(s) 52, 632
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 1 cut(s) 131
BstAUI TGTACA 2 cut(s) 216, 490
BstBI TTCGAA 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 432, 626
BstF5I GGATG 2 cut(s) 177, 493
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 5 cut(s) 235, 301, 325, 478, 620
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 5 cut(s) 232, 298, 322, 475, 617
BstMWI GCNNNNNNNGC 1 cut(s) 525
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 601
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 279
BsuRI GGCC 1 cut(s) 631
BtsCI GGATG 2 cut(s) 177, 493
CciI TCATGA 2 cut(s) 166, 325
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 587
Csp6I GTAC 5 cut(s) 132, 150, 217, 491, 573
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviAII CATG 6 cut(s) 161, 167, 326, 333, 479, 562
CviJI RGCY 7 cut(s) 87, 97, 409, 431, 439, 625, 631
CviKI_1 RGCY 7 cut(s) 87, 97, 409, 431, 439, 625, 631
CviQI GTAC 5 cut(s) 132, 150, 217, 491, 573
DdeI CTNAG 2 cut(s) 432, 626
DpnI GATC 5 cut(s) 234, 300, 324, 477, 619
DpnII GATC 5 cut(s) 232, 298, 322, 475, 617
DraI TTTAAA 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 52, 632
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 2 cut(s) 83, 461
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 2 cut(s) 52, 632
ErhI CCWWGG 2 cut(s) 52, 632
FaeI CATG 6 cut(s) 164, 170, 329, 336, 482, 565
FalI AAGNNNNNCTT 1 cut(s) 625
FatI CATG 6 cut(s) 160, 166, 325, 332, 478, 561
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 2 cut(s) 164, 500
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 631
HhaI GCGC 1 cut(s) 292
Hin1II CATG 6 cut(s) 164, 170, 329, 336, 482, 565
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HphI GGTGA 2 cut(s) 273, 364
Hpy166II GTNNAC 2 cut(s) 550, 573
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 4 cut(s) 167, 326, 485, 539
Hpy8I GTNNAC 2 cut(s) 550, 573
HpyAV CCTTC 3 cut(s) 309, 397, 436
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 525
HpyF3I CTNAG 2 cut(s) 432, 626
Hsp92II CATG 6 cut(s) 164, 170, 329, 336, 482, 565
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 5 cut(s) 232, 298, 322, 475, 617
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 602
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 194
MalI GATC 5 cut(s) 234, 300, 324, 477, 619
MboI GATC 5 cut(s) 232, 298, 322, 475, 617
MboII GAAGA 2 cut(s) 76, 618
MluCI AATT 3 cut(s) 13, 543, 578
MmeI TCCRAC 2 cut(s) 429, 438
MnlI CCTC 7 cut(s) 27, 322, 364, 530, 615, 621, 639
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 2 cut(s) 42, 341
MslI CAYNNNNRTG 2 cut(s) 165, 566
MspR9I CCNGG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 525
NdeII GATC 5 cut(s) 232, 298, 322, 475, 617
NlaIII CATG 6 cut(s) 164, 170, 329, 336, 482, 565
NlaIV GGNNCC 1 cut(s) 408
NspI RCATGY 1 cut(s) 336
NspV TTCGAA 1 cut(s) 313
PagI TCATGA 2 cut(s) 166, 325
PdmI GAANNNNTTC 1 cut(s) 501
PkrI GCNGC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 587
RsaI GTAC 5 cut(s) 133, 151, 218, 492, 574
RsaNI GTAC 5 cut(s) 132, 150, 217, 491, 573
RseI CAYNNNNRTG 2 cut(s) 165, 566
SaqAI TTAA 2 cut(s) 42, 341
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 5 cut(s) 232, 298, 322, 475, 617
Sau96I GGNCC 1 cut(s) 587
ScaI AGTACT 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 603
SetI ASST 9 cut(s) 38, 63, 72, 89, 99, 354, 433, 441, 557
SfaNI GCATC 1 cut(s) 602
SfuI TTCGAA 1 cut(s) 313
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 165, 566
Sse9I AATT 3 cut(s) 13, 543, 578
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 2 cut(s) 52, 632
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 313, 620
TaqII GACCGA 1 cut(s) 575
TasI AATT 3 cut(s) 13, 543, 578
TatI WGTACW 4 cut(s) 149, 216, 490, 572
Tru1I TTAA 2 cut(s) 42, 341
Tru9I TTAA 2 cut(s) 42, 341
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 155, 188, 416, 494, 550
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 13, 578
XceI RCATGY 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.