Prupe.7G231300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010815
Physical Location & Seq
Reverse (-)
20270913 .. 20273095
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G231300.1

Sequence Viewer

Length: 723 bp
ATGCTGCTTAGAAATCCCATTTCCAACACCAAGAGGTTCTTCCAGAAAACCCTCGGGAACTTGAAGAATTTCTTCTCCGCAGGAAGCTACCAAAAGCTCCCAAAATCTCCTCCTGTCTACAACAACCCCTTTCAATATGCTACTGCTGTTGACCTAAACAATCTCCACACCACAAGTTACAAAGACTTGGACAAGCTGTACACTGACTTCACAGACCAATGGGATTCCGAAATTGAAAAGATGAGGAGATCAAACAAGAAGAAAGTTATCTCCACACCCACCAAATTACAAGACCACCATCAAGAAGTTCAGAGCCCAACAAGCTTCACCAAGCTCAATGCTTATCATGCAAGTCCTCCTCCTGCAAAGATCAATACAAATTATGAGAAATATGATCTTAAAAACAGGACGGTGATCAAGAACAGAGACGAAAAGACGAAAACTGTTCCGAAGGAATCGAGGGAGCTTCGAGAGGGTTGCTTGGTGGCACAGAAGATAAAGGAGATGGAGATGCTTGACATGAGCAATGTGGATCATGTTTTGGACATAGAAGAGGTTCTTCATTATTATTCTAGGCTCACTTGCCCTGCCTATTTAGAAATTGTGGACAAGTTTTTCATGGACGTGTATGCTGAGTTTTTTGGTCCAGCAGCACCCGCAGCAGCCACACCAGCACGCAGCATCAAGTCAAGGCTGAGGCCAAGGTCTCTGATGATGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.84

Weight (kDa)

9.35

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24535
fragaria_vesca FvH4_1g04790
malus_domestica MD02G1046500.v1.1 MD15G1184700.v1.1
prunus_persica Prupe.7G231300_v2.0.a1
pyrus_communis pycom02g03900 pycom15g16620
rosa_chinensis RchiOBHm_Chr2g0090421
rosa_laevigata RLG00000016105 RLG00000016107
rosa_multiflora Rmu_sc0004514.1_g000014
rosa_roxburghii Rroxscaffold_2G00151170
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053300 Rh2BG052600 Rh2CG054400 Rh2CG054700 Rh2DG053300 Rh2DG053500
rosa_wichuraiana Rw2G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AciI CCGC 2 cut(s) 78, 657
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 67
AfaI GTAC 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 3 cut(s) 64, 134, 236
AjiI CACGTC 1 cut(s) 625
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 6 cut(s) 87, 97, 196, 324, 334, 466
AluI AGCT 6 cut(s) 87, 97, 196, 324, 334, 466
Alw26I GTCTC 2 cut(s) 420, 711
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 698
ApeKI GCWGC 5 cut(s) 4, 650, 659, 662, 678
ApoI RAATTY 1 cut(s) 67
Asp700I GAANNNNTTC 3 cut(s) 68, 71, 555
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 2 cut(s) 319, 424
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BbvCI CCTCAGC 1 cut(s) 695
BbvI GCAGC 4 cut(s) 662, 671, 674, 690
BccI CCATC 2 cut(s) 306, 499
BcgI CGANNNNNNTGC 2 cut(s) 459, 493
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 420, 711
BfaI CTAG 1 cut(s) 573
BisI GCNGC 5 cut(s) 5, 651, 660, 663, 679
BlsI GCNGC 5 cut(s) 6, 652, 661, 664, 680
Bme18I GGWCC 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 644
BmsI GCATC 2 cut(s) 501, 690
Bpu10I CCTNAGC 1 cut(s) 695
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 52, 701
Bse3DI GCAATG 1 cut(s) 532
BseDI CCNNGG 2 cut(s) 52, 701
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 2 cut(s) 624, 686
BseRI GAGGAG 3 cut(s) 99, 259, 348
BseXI GCAGC 4 cut(s) 662, 671, 674, 690
BshFI GGCC 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 420, 711
BsmBI CGTCTC 1 cut(s) 420
BsnI GGCC 1 cut(s) 700
Bso31I GGTCTC 1 cut(s) 711
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 5 cut(s) 248, 369, 394, 414, 532
BspACI CCGC 2 cut(s) 78, 657
BspANI GGCC 1 cut(s) 700
BspCNI CTCAG 2 cut(s) 625, 687
BspPI GGATC 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 711
BsrDI GCAATG 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 52, 701
BssMI GATC 5 cut(s) 248, 369, 394, 414, 532
BssT1I CCWWGG 1 cut(s) 701
Bst4CI ACNGT 2 cut(s) 412, 445
Bst6I CTCTTC 1 cut(s) 546
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 676
BstDEI CTNAG 3 cut(s) 8, 633, 695
BstKTI GATC 5 cut(s) 251, 372, 397, 417, 535
BstMAI GTCTC 2 cut(s) 420, 711
BstMBI GATC 5 cut(s) 248, 369, 394, 414, 532
BstMWI GCNNNNNNNGC 5 cut(s) 321, 347, 656, 659, 671
BstV1I GCAGC 4 cut(s) 662, 671, 674, 690
BsuRI GGCC 1 cut(s) 700
BtrI CACGTC 1 cut(s) 625
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 644
Csp6I GTAC 1 cut(s) 199
CviAII CATG 4 cut(s) 347, 520, 536, 619
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 3 cut(s) 8, 633, 695
DpnI GATC 5 cut(s) 250, 371, 396, 416, 534
DpnII GATC 5 cut(s) 248, 369, 394, 414, 532
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 701
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 701
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 4 cut(s) 350, 523, 539, 622
FaiI YATR 9 cut(s) 138, 348, 384, 393, 521, 537, 548, 620, 630
FalI AAGNNNNNCTT 6 cut(s) 23, 55, 56, 88, 543, 575
FatI CATG 4 cut(s) 346, 519, 535, 618
FauI CCCGC 1 cut(s) 664
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 5 cut(s) 5, 651, 660, 663, 679
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 5 cut(s) 5, 651, 660, 663, 679
FspBI CTAG 1 cut(s) 573
GluI GCNGC 5 cut(s) 5, 651, 660, 663, 679
HaeIII GGCC 1 cut(s) 700
Hin1II CATG 4 cut(s) 350, 523, 539, 622
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 2 cut(s) 224, 455
HphI GGTGA 2 cut(s) 319, 424
Hpy166II GTNNAC 4 cut(s) 118, 151, 201, 607
Hpy188I TCNGA 4 cut(s) 229, 312, 450, 711
Hpy188III TCNNGA 5 cut(s) 43, 55, 302, 418, 470
Hpy8I GTNNAC 4 cut(s) 118, 151, 201, 607
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 2 cut(s) 412, 445
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 2 cut(s) 350, 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 321, 347, 656, 659, 671
HpyF3I CTNAG 3 cut(s) 8, 633, 695
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 4 cut(s) 350, 523, 539, 622
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 5 cut(s) 248, 369, 394, 414, 532
LmnI GCTCC 2 cut(s) 102, 463
LpnPI CCDG 8 cut(s) 56, 66, 126, 375, 391, 600, 660, 684
Lsp1109I GCAGC 4 cut(s) 662, 671, 674, 690
LweI GCATC 2 cut(s) 501, 690
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 176
MalI GATC 5 cut(s) 250, 371, 396, 416, 534
MboI GATC 5 cut(s) 248, 369, 394, 414, 532
MboII GAAGA 7 cut(s) 31, 64, 76, 271, 505, 551, 563
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 5 cut(s) 67, 231, 284, 379, 600
MmeI TCCRAC 1 cut(s) 48
MroXI GAANNNNTTC 3 cut(s) 68, 71, 555
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 623
MwoI GCNNNNNNNGC 5 cut(s) 321, 347, 656, 659, 671
NdeII GATC 5 cut(s) 248, 369, 394, 414, 532
NlaIII CATG 4 cut(s) 350, 523, 539, 622
PdmI GAANNNNTTC 3 cut(s) 68, 71, 555
PfeI GAWTC 2 cut(s) 224, 455
PkrI GCNGC 5 cut(s) 6, 652, 661, 664, 680
PspPI GGNCC 1 cut(s) 644
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 5 cut(s) 5, 651, 660, 663, 679
Sau3AI GATC 5 cut(s) 248, 369, 394, 414, 532
Sau96I GGNCC 1 cut(s) 644
SduI GDGCHC 1 cut(s) 317
SfaNI GCATC 2 cut(s) 501, 690
SinI GGWCC 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 5 cut(s) 67, 231, 284, 379, 600
SsiI CCGC 2 cut(s) 78, 657
SspMI CTAG 1 cut(s) 573
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 2 cut(s) 412, 445
TaiI ACGT 1 cut(s) 627
TaqI TCGA 2 cut(s) 458, 469
TasI AATT 5 cut(s) 67, 231, 284, 379, 600
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 2 cut(s) 224, 455
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 208
TseI GCWGC 5 cut(s) 4, 650, 659, 662, 678
TspDTI ATGAA 2 cut(s) 551, 607
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 3 cut(s) 68, 71, 555
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.