RLG00000016107

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010815
Physical Location & Seq
Forward (+)
3941812 .. 3942456
645 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016107

Sequence Viewer

Length: 645 bp
ATGGTGCTTAGAAATTCAATTTCAAACACCAAGAGGTTTTTTCAGAAAACCCTTGGGACCCTGAAGAACCTATTTTCTGCTGGTAGCTATGAAAAGCTACCCAAATCACCTGCCACCTATAGTACTTCTATGTCTACTAGTACTTTTGCTCGTGTTCATGATATGAATATCCACAACACAAGCAGTTACAAAGACTTGGACAAGTTGTACAACGACTTCACAGATCAATGGGATAGCAAGAGACAAAGCAACAACAAGAGATTAGTAATTTCCTCACCCACCCAGCAAGATCATAAAGTGGTTCAAAGGCGAGATCATGAGGCATGTGATCGTAATAACAAGGTGATGACAAAGAGAGTGGAGGAAAGTAGAACTACGTTTTCCAGTGAATTGAAAGAGCCGAAAAGGTGTTGTTTGGTGGCTGAGAAGTTGAAGGCGTTGGAGCTGTTGGATATAAGCAATGTAGATCATGTTCTGGATGTACAAGAAGTGTTTCATTACTACTCTCGCCTCACTTGCCCTGCCTATCTTGAAATCGTGGACAGGTTCTTCATGGAAATGTGCGCTGAATTTTTCGGTCCAGCAGCAACCCCAGGAAGAAGCAAGAAGTCAAGGCTGAGGCCAAGGACCTCTTTGAGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.83

Weight (kDa)

9.51

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24535
fragaria_vesca FvH4_1g04790
malus_domestica MD02G1046500.v1.1 MD15G1184700.v1.1
prunus_persica Prupe.7G231300_v2.0.a1
pyrus_communis pycom02g03900 pycom15g16620
rosa_chinensis RchiOBHm_Chr2g0090421
rosa_laevigata RLG00000016105 RLG00000016107
rosa_multiflora Rmu_sc0004514.1_g000014
rosa_roxburghii Rroxscaffold_2G00151170
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053300 Rh2BG052600 Rh2CG054400 Rh2CG054700 Rh2DG053300 Rh2DG053500
rosa_wichuraiana Rw2G004380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 134
AcsI RAATTY 2 cut(s) 13, 569
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 4 cut(s) 124, 142, 209, 483
AfiI CCNNNNNNNGG 1 cut(s) 636
AgsI TTSAA 6 cut(s) 18, 24, 305, 394, 433, 533
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 3 cut(s) 87, 97, 445
AluI AGCT 3 cut(s) 87, 97, 445
Alw26I GTCTC 1 cut(s) 235
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 2 cut(s) 13, 569
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 3 cut(s) 57, 578, 627
AsuHPI GGTGA 3 cut(s) 99, 267, 355
AvaII GGWCC 3 cut(s) 57, 578, 627
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BauI CACGAG 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 617
BbvI GCAGC 1 cut(s) 596
BciT130I CCWGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 235
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 118
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
BmcAI AGTACT 2 cut(s) 124, 142
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 3 cut(s) 57, 578, 627
BmgT120I GGNCC 3 cut(s) 57, 578, 627
BmiI GGNNCC 2 cut(s) 58, 59
BmrFI CCNGG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 617
BsaJI CCNNGG 3 cut(s) 52, 592, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 3 cut(s) 52, 592, 623
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 414, 608
BseNI ACTGG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 596
BseYI CCCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 622
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 622
Bsp1407I TGTACA 2 cut(s) 207, 481
Bsp143I GATC 5 cut(s) 223, 289, 313, 328, 466
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 2 cut(s) 415, 609
BspHI TCATGA 2 cut(s) 157, 316
BspLI GGNNCC 2 cut(s) 58, 59
BspMI ACCTGC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 466
BsrGI TGTACA 2 cut(s) 207, 481
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 3 cut(s) 52, 592, 623
BssMI GATC 5 cut(s) 223, 289, 313, 328, 466
BssSI CACGAG 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 52, 623
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 594
BstAUI TGTACA 2 cut(s) 207, 481
BstDEI CTNAG 3 cut(s) 8, 423, 617
BstENI CCTNNNNNAGG 1 cut(s) 634
BstF5I GGATG 1 cut(s) 484
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 5 cut(s) 226, 292, 316, 331, 469
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 5 cut(s) 223, 289, 313, 328, 466
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 596
BsuRI GGCC 1 cut(s) 622
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 118
CciI TCATGA 2 cut(s) 157, 316
CfoI GCGC 1 cut(s) 566
Cfr13I GGNCC 3 cut(s) 57, 578, 627
Csp6I GTAC 4 cut(s) 123, 141, 208, 482
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 5 cut(s) 158, 317, 324, 470, 553
CviJI RGCY 7 cut(s) 87, 97, 400, 422, 445, 616, 622
CviKI_1 RGCY 7 cut(s) 87, 97, 400, 422, 445, 616, 622
CviQI GTAC 4 cut(s) 123, 141, 208, 482
DdeI CTNAG 3 cut(s) 8, 423, 617
DpnI GATC 5 cut(s) 225, 291, 315, 330, 468
DpnII GATC 5 cut(s) 223, 289, 313, 328, 466
Eco130I CCWWGG 2 cut(s) 52, 623
Eco47I GGWCC 3 cut(s) 57, 578, 627
Eco57I CTGAAG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 634
EcoO109I RGGNCCY 2 cut(s) 57, 627
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 2 cut(s) 52, 623
ErhI CCWWGG 2 cut(s) 52, 623
FaeI CATG 5 cut(s) 161, 320, 327, 473, 556
FalI AAGNNNNNCTT 1 cut(s) 616
FaqI GGGAC 1 cut(s) 70
FatI CATG 5 cut(s) 157, 316, 323, 469, 552
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 565
GluI GCNGC 1 cut(s) 585
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 622
HhaI GCGC 1 cut(s) 566
Hin1II CATG 5 cut(s) 161, 320, 327, 473, 556
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HphI GGTGA 3 cut(s) 99, 267, 355
Hpy166II GTNNAC 2 cut(s) 135, 541
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 4 cut(s) 158, 317, 476, 530
Hpy8I GTNNAC 2 cut(s) 135, 541
HpyAV CCTTC 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
HpyF3I CTNAG 3 cut(s) 8, 423, 617
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 5 cut(s) 161, 320, 327, 473, 556
HspAI GCGC 1 cut(s) 564
KflI GGGWCCC 1 cut(s) 57
Kzo9I GATC 5 cut(s) 223, 289, 313, 328, 466
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 1 cut(s) 596
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 185
MalI GATC 5 cut(s) 225, 291, 315, 330, 468
MboI GATC 5 cut(s) 223, 289, 313, 328, 466
MboII GAAGA 3 cut(s) 76, 541, 609
MluCI AATT 5 cut(s) 13, 18, 267, 389, 569
MmeI TCCRAC 2 cut(s) 420, 429
MnlI CCTC 8 cut(s) 27, 283, 313, 355, 521, 612, 630, 640
MroXI GAANNNNTTC 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 1 cut(s) 516
NdeII GATC 5 cut(s) 223, 289, 313, 328, 466
NlaIII CATG 5 cut(s) 161, 320, 327, 473, 556
NlaIV GGNNCC 2 cut(s) 58, 59
NspI RCATGY 1 cut(s) 327
PagI TCATGA 2 cut(s) 157, 316
PaqCI CACCTGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 492
PkrI GCNGC 1 cut(s) 586
PpuMI RGGWCCY 2 cut(s) 57, 627
Psp5II RGGWCCY 2 cut(s) 57, 627
Psp6I CCWGG 1 cut(s) 592
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 2 cut(s) 58, 59
PspPI GGNCC 3 cut(s) 57, 578, 627
PspPPI RGGWCCY 2 cut(s) 57, 627
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
RsaI GTAC 4 cut(s) 124, 142, 209, 483
RsaNI GTAC 4 cut(s) 123, 141, 208, 482
RseI CAYNNNNRTG 1 cut(s) 557
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 5 cut(s) 223, 289, 313, 328, 466
Sau96I GGNCC 3 cut(s) 57, 578, 627
ScaI AGTACT 2 cut(s) 124, 142
ScrFI CCNGG 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 3 cut(s) 57, 578, 627
SmiMI CAYNNNNRTG 1 cut(s) 557
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 5 cut(s) 13, 18, 267, 389, 569
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 592
StyI CCWWGG 2 cut(s) 52, 623
TaiI ACGT 1 cut(s) 380
TaqII GACCGA 1 cut(s) 566
TasI AATT 5 cut(s) 13, 18, 267, 389, 569
TatI WGTACW 4 cut(s) 122, 140, 207, 481
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 584
TspDTI ATGAA 5 cut(s) 105, 146, 179, 485, 541
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 3 cut(s) 57, 578, 627
XagI CCTNNNNNAGG 1 cut(s) 634
XapI RAATTY 2 cut(s) 13, 569
XceI RCATGY 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 1 cut(s) 138
ZrmI AGTACT 2 cut(s) 124, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.