Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006858

Physical Location & Seq

Genomic Coordinates Forward (+)

9040014 .. 9042093

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTCAGACAACAATCCAGAAATCGAATCATCAACCTTCAACAATCTAAACATCGACGTCACAGAATCAATCCTCTATCATCTCCCAATCCCTTCCTTAGTCCGTTTCACTCTCGTCTCCAAACAATGGCGTTCACTCATCACCTCTCTTCCTCCTTCTCCTTCTCCTTCTCCATCATCACCACCATGGCTCTTCCTCTTCGGTATCCACAACACTTCCTCTTTCCACAACCAATCCTTCGCTTTCGATCCTCTCTCCAACACCTGGCTCCGTCTCCCTCCTTCCTCCTCTTCCTCCGATCATCTCGTCGGATCTAATCGCTTCCTCTTCACCACCGCTCCTCGCTTCTCCTTCTCACCAATCCTTAAACCTAATTGGCGATTCACTTCCCCTGTTCGATTTCCTCGAATCAATCCTCTCTTAACCGTTTTCACAACTCTATCTAACTCATCCAAACTAATCCTCGTCGGTGGATCTTCGCGTATCGGCGGATTAGTCGATATCGAAGAACGATTAGCTGTTCAAATCTACGATCCTGTTCTCGATTCATGGGAGCTTTGTTCACCACTCCCTGCTGATTTCAGATCTGGTCAGGATCATCAAACTTTGACCTCAGCTTTGTTTAAGAGAAGATTCTATGTTTTCGATAACTATTCGTGTTTTATCTCGTCGTTTTGCTTGGATTCATATACATGGAGTGATGTTCAAACTCTTAAACCACCAGGACTCTCGTTTGCTTACTTGAATTCTTGTAATGGTATGCTTGTTCTTGGTGGAATGTGTGGGTTCTCGTTTAATCTTTGGAGTATTGAAGAAGGCTCGATGGAATTTAGCGAAATCGCGGTTATGCCTGAGGATTTGTTGTTTGGATTAGTTGATAGTGATGATGAGGATGACAAGTTTAGGAGTTTGAAATGTGCTGGCTCTGGGAATCTTGTTTATGTGTTTAATGATGATTGTCATAAGAAATTTCCAGCTTGTGTTTGTGAGATTGGTGGTGGTGAGAATGGGATATGTAGTTGGAGAAGAGTTCCTTGTTTGCCTTCTCCGGTTAATAAGTTTCATAAAGTTGTTAGTTTCTGCTCAACGGTGTCTATTACCGATGTTTTCCACCCCGAGGAAGCTCGGATTGGCGGTTCGATCCGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

383

Amino Acids

42.67

Weight (kDa)

5.5

Isoelectric Point (pI)

70.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 51	6.7e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24760 AT3G24760
fragaria_vesca	FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330
malus_domestica	MD05G1178400.v1.1
prunus_persica	Prupe.8G204900_v2.0.a1 Prupe.8G204900_v2.0.a1
pyrus_communis	pycom10g14360
rosa_chinensis	RchiOBHm_Chr6g0285141
rosa_laevigata	RLG00000012669
rosa_multiflora	Rmu_co8327663.1_g000001 Rmu_sc0002535.1_g000018 Rmu_sc0012068.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183630 Rroxscaffold_7G00184000
rosa_rugosa	Rorug06G0172000 Rorug06G0172100 Rorug06G0172100
rosa_samantha	Rh6BG283400 Rh6CG285200 Rh6DG278300
rosa_wichuraiana	Rw6G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccB7I	CCANNNNNTGG	2 cut(s)	126, 264
AccBSI	CCGCTC	1 cut(s)	338
AccII	CGCG	2 cut(s)	481, 842
AciI	CCGC	4 cut(s)	336, 489, 842, 1134
AclWI	GGATC	6 cut(s)	242, 319, 481, 527, 603, 1135
AcsI	RAATTY	3 cut(s)	745, 827, 968
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	126, 264, 1117
AgsI	TTSAA	6 cut(s)	40, 524, 707, 745, 812, 913
AjnI	CCWGG	2 cut(s)	263, 721
AjuI	GAANNNNNNNTTGG	2 cut(s)	1113, 1145
AloI	GAACNNNNNNTCC	2 cut(s)	1120, 1152
AluBI	AGCT	5 cut(s)	518, 556, 617, 977, 1124
AluI	AGCT	5 cut(s)	518, 556, 617, 977, 1124
Alw26I	GTCTC	2 cut(s)	121, 278
AlwI	GGATC	6 cut(s)	242, 319, 481, 527, 603, 1135
Ama87I	CYCGRG	1 cut(s)	1115
ApoI	RAATTY	3 cut(s)	745, 827, 968
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AsuHPI	GGTGA	6 cut(s)	133, 171, 322, 348, 555, 1013
AvaI	CYCGRG	1 cut(s)	1115
AxyI	CCTNAGG	1 cut(s)	852
BbvCI	CCTCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	181, 817
BciT130I	CCWGG	2 cut(s)	265, 723
BciVI	GTATCC	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	121, 278
BfuI	GTATCC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	584
Bme1390I	CCNGG	2 cut(s)	265, 723
BmeT110I	CYCGRG	1 cut(s)	1115
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	265, 723
Bpu10I	CCTNAGC	1 cut(s)	613
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	185, 1116, 1144
BsaWI	WCCGGW	1 cut(s)	1048
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 264, 1117
Bse21I	CCTNAGG	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	265, 723
BseDI	CCNNGG	3 cut(s)	185, 1116, 1144
BseGI	GGATG	2 cut(s)	449, 898
BseLI	CCNNNNNNNGG	3 cut(s)	126, 264, 1117
BseMII	CTCAG	2 cut(s)	627, 843
BseRI	GAGGAG	2 cut(s)	277, 330
Bsh1236I	CGCG	2 cut(s)	481, 842
BsiHKCI	CYCGRG	1 cut(s)	1115
BsiSI	CCGG	1 cut(s)	1049
BslI	CCNNNNNNNGG	3 cut(s)	126, 264, 1117
BsmAI	GTCTC	2 cut(s)	121, 278
BsmBI	CGTCTC	2 cut(s)	121, 278
BsoBI	CYCGRG	1 cut(s)	1115
Bsp143I	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	4 cut(s)	336, 489, 842, 1134
BspCNI	CTCAG	2 cut(s)	626, 844
BspFNI	CGCG	2 cut(s)	481, 842
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	6 cut(s)	242, 319, 481, 527, 603, 1135
BspQI	GCTCTTC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	185, 1116, 1144
BssMI	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	265, 723
Bst4CI	ACNGT	2 cut(s)	427, 1090
Bst6I	CTCTTC	6 cut(s)	153, 197, 203, 295, 332, 1021
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	922
BstDEI	CTNAG	3 cut(s)	97, 613, 852
BstDSI	CCRYGG	2 cut(s)	185, 1144
BstF5I	GGATG	2 cut(s)	449, 898
BstFNI	CGCG	2 cut(s)	481, 842
BstKTI	GATC	8 cut(s)	250, 301, 314, 476, 535, 587, 598, 1143
BstMAI	GTCTC	2 cut(s)	121, 278
BstMBI	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
BstNI	CCWGG	2 cut(s)	265, 723
BstSCI	CCNGG	2 cut(s)	263, 721
BstUI	CGCG	2 cut(s)	481, 842
BstX2I	RGATCY	3 cut(s)	311, 473, 584
BstYI	RGATCY	3 cut(s)	311, 473, 584
Bsu36I	CCTNAGG	1 cut(s)	852
BsuI	GTATCC	1 cut(s)	215
BtgI	CCRYGG	2 cut(s)	185, 1144
BtsCI	GGATG	2 cut(s)	449, 898
Cac8I	GCNNGC	1 cut(s)	922
CviAII	CATG	3 cut(s)	186, 549, 693
CviJI	RGCY	9 cut(s)	190, 268, 518, 556, 617, 819, 924, 977, 1124
CviKI_1	RGCY	9 cut(s)	190, 268, 518, 556, 617, 819, 924, 977, 1124
DdeI	CTNAG	3 cut(s)	97, 613, 852
DpnI	GATC	8 cut(s)	249, 300, 313, 475, 534, 586, 597, 1142
DpnII	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
Eam1104I	CTCTTC	6 cut(s)	153, 197, 203, 295, 332, 1021
EarI	CTCTTC	6 cut(s)	153, 197, 203, 295, 332, 1021
EciI	GGCGGA	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	852
Eco88I	CYCGRG	1 cut(s)	1115
EcoRI	GAATTC	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	263, 721
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
Esp3I	CGTCTC	2 cut(s)	121, 278
FaeI	CATG	3 cut(s)	189, 552, 696
FalI	AAGNNNNNCTT	2 cut(s)	1018, 1050
FatI	CATG	3 cut(s)	185, 548, 692
FokI	GGATG	2 cut(s)	436, 905
HapII	CCGG	1 cut(s)	1049
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	189, 552, 696
HinfI	GANTC	9 cut(s)	26, 65, 381, 408, 545, 633, 683, 726, 931
HpaII	CCGG	1 cut(s)	1049
HphI	GGTGA	6 cut(s)	133, 171, 322, 348, 555, 1013
Hpy166II	GTNNAC	2 cut(s)	134, 563
Hpy188I	TCNGA	5 cut(s)	7, 298, 311, 584, 1128
Hpy188III	TCNNGA	3 cut(s)	17, 542, 593
Hpy8I	GTNNAC	2 cut(s)	134, 563
Hpy99I	CGWCG	4 cut(s)	59, 311, 470, 673
HpyCH4III	ACNGT	2 cut(s)	427, 1090
HpyCH4IV	ACGT	1 cut(s)	57
HpyF3I	CTNAG	3 cut(s)	97, 613, 852
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	189, 552, 696
Kzo9I	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	3 cut(s)	273, 343, 553
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	8 cut(s)	249, 300, 313, 475, 534, 586, 597, 1142
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
MflI	RGATCY	3 cut(s)	311, 473, 584
MluCI	AATT	4 cut(s)	373, 745, 827, 968
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	3 cut(s)	282, 289, 1001
MseI	TTAA	7 cut(s)	366, 422, 624, 714, 795, 948, 1053
MslI	CAYNNNNRTG	2 cut(s)	184, 691
MspI	CCGG	1 cut(s)	1049
MspR9I	CCNGG	2 cut(s)	265, 723
MvaI	CCWGG	2 cut(s)	265, 723
MvnI	CGCG	2 cut(s)	481, 842
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
NlaIII	CATG	3 cut(s)	189, 552, 696
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PfeI	GAWTC	8 cut(s)	26, 65, 381, 408, 545, 633, 683, 931
PflMI	CCANNNNNTGG	2 cut(s)	126, 264
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
Psp6I	CCWGG	2 cut(s)	263, 721
PspGI	CCWGG	2 cut(s)	263, 721
PspN4I	GGNNCC	1 cut(s)	269
PsuI	RGATCY	3 cut(s)	311, 473, 584
RseI	CAYNNNNRTG	2 cut(s)	184, 691
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	7 cut(s)	366, 422, 624, 714, 795, 948, 1053
Sau3AI	GATC	8 cut(s)	247, 298, 311, 473, 532, 584, 595, 1140
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	2 cut(s)	265, 723
SmiMI	CAYNNNNRTG	2 cut(s)	184, 691
Sse9I	AATT	4 cut(s)	373, 745, 827, 968
SsiI	CCGC	4 cut(s)	336, 489, 842, 1134
StyD4I	CCNGG	2 cut(s)	263, 721
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	427, 1090
TaiI	ACGT	1 cut(s)	60
TasI	AATT	4 cut(s)	373, 745, 827, 968
TfiI	GAWTC	8 cut(s)	26, 65, 381, 408, 545, 633, 683, 931
Tru1I	TTAA	7 cut(s)	366, 422, 624, 714, 795, 948, 1053
Tru9I	TTAA	7 cut(s)	366, 422, 624, 714, 795, 948, 1053
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	537, 675, 1052
TspGWI	ACGGA	3 cut(s)	92, 260, 1133
Van91I	CCANNNNNTGG	2 cut(s)	126, 264
XapI	RAATTY	3 cut(s)	745, 827, 968
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.