Rmu_sc0002535.1_g000018

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002535.1
Physical Location & Seq
Forward (+)
87058 .. 88200
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002535.1_g000018.1.cds

Sequence Viewer

Length: 1143 bp
atgacggaaatcacgaacctgagctccgacgtaacggagcttatcctctcctacctccccatcccgagcctcgtccgagcctccaccgtctgcaagctctggcaatccatcatctcctccaccaccttctccgccacccaaaccccctggttcttcctctacggcatccacaacacctcctccaagaacaaccagtccttcgccttcgaccctctctccaaccgctggctccgcctgcccacccccaccttccctccccaccactactcccactcctgcttcctcggcgccgacggcttcttcctcatcaccgcccccaacttcacctactccagaatcctcaagcgctcttggcgctccacctcgcctctccacttctcccgcatcaaccctcttctcggcgtcttcgactccggctctctcctccccaacttcatcgtcgtcggcggtgtcagattcatcggcaacttggtcgacatcgaggaccgcttggccgtcgagatctacacccccgactccgattcctggcagctcggtcctcctctccctgctgatttcagatccggcaattcctcccagtccttgtcatccgccctcttcaaagggcggttctacgtcttcggcatctattcctgcttcatttcatcttttgacctgcacaccaacgcctggagccaagtccagactctccggccgcctggagttgtcttctctttcttgattggctgccgggacaggcttgttctggccggaatctgcaacgggcctctcggatcctcctttaatctgtggagtatcgaggaggccaccatggagttcagtgagattgcaatcatgcctcaggacttgctgtgtagcttgtttgagggggatgaggaggataagtttgcgagcttgaaatgtgtgggcttgggaaatcttatatacgtgtttaatgaagagtaccataagaagtacccggcttgtgtttgcgagattagcagtgagactccgcagtgcagctggaggagagtgcctcccttgccttcacctgtgaataagtttcaccaagttataagcttttgttccacggtttcgctcaatactattcttcagcctgaggaagaggggcacgttggtcccgtgcagcctatggttgactga

Protein Analysis

380

Amino Acids

42.47

Weight (kDa)

5.6

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1055
Acc36I ACCTGC 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 2 cut(s) 225, 669
AccI GTMKAC 1 cut(s) 474
AclWI GGATC 3 cut(s) 555, 768, 781
AcoI YGGCCR 3 cut(s) 492, 692, 747
AcuI CTGAAG 1 cut(s) 1076
AcyI GRCGYC 2 cut(s) 288, 402
AfaI GTAC 2 cut(s) 944, 956
AfeI AGCGCT 1 cut(s) 347
AfiI CCNNNNNNNGG 4 cut(s) 225, 398, 525, 669
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 2 cut(s) 601, 898
AjnI CCWGG 4 cut(s) 146, 524, 668, 697
AloI GAACNNNNNNTCC 4 cut(s) 8, 40, 179, 211
AluBI AGCT 8 cut(s) 24, 40, 97, 532, 858, 894, 1002, 1059
AluI AGCT 8 cut(s) 24, 40, 97, 532, 858, 894, 1002, 1059
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 980
AlwI GGATC 3 cut(s) 555, 768, 781
Ama87I CYCGRG 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 347
AoxI GGCC 5 cut(s) 492, 692, 747, 764, 804
ApeKI GCWGC 4 cut(s) 529, 726, 999, 1126
AspLEI GCGC 3 cut(s) 290, 348, 357
AspS9I GGNCC 4 cut(s) 484, 536, 764, 1118
AsuC2I CCSGG 2 cut(s) 731, 959
AsuHPI GGTGA 4 cut(s) 301, 316, 1020, 1037
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 3 cut(s) 484, 536, 1118
AxyI CCTNAGG 2 cut(s) 840, 1098
BaeGI GKGCMC 1 cut(s) 1113
BamHI GGATCC 1 cut(s) 773
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 26
BbsI GAAGAC 3 cut(s) 397, 610, 700
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 4 cut(s) 541, 713, 1011, 1138
BccI CCATC 2 cut(s) 68, 116
BceAI ACGGC 3 cut(s) 178, 310, 479
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BciT130I CCWGG 4 cut(s) 148, 526, 670, 699
BcnI CCSGG 2 cut(s) 731, 959
BcoDI GTCTC 1 cut(s) 980
BfoI RGCGCY 3 cut(s) 291, 349, 358
BfuAI ACCTGC 1 cut(s) 663
BglII AGATCT 1 cut(s) 501
BisI GCNGC 5 cut(s) 530, 695, 727, 1000, 1127
BlsI GCNGC 5 cut(s) 531, 696, 728, 1001, 1128
Bme1390I CCNGG 6 cut(s) 148, 526, 670, 699, 731, 959
Bme18I GGWCC 3 cut(s) 484, 536, 1118
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 484, 536, 764, 1118
BmiI GGNNCC 5 cut(s) 230, 289, 674, 775, 1120
BmrFI CCNGG 6 cut(s) 148, 526, 670, 699, 731, 959
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 3 cut(s) 174, 393, 633
BmuI ACTGGG 1 cut(s) 571
BpiI GAAGAC 3 cut(s) 397, 610, 700
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 4 cut(s) 316, 691, 720, 1024
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 731, 959
BsaAI YACGTR 1 cut(s) 928
BsaBI GATNNNNATC 1 cut(s) 830
BsaHI GRCGYC 2 cut(s) 288, 402
BsaJI CCNNGG 4 cut(s) 146, 283, 810, 1068
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 398, 525, 669
Bse1I ACTGG 2 cut(s) 193, 577
Bse21I CCTNAGG 2 cut(s) 840, 1098
Bse8I GATNNNNATC 1 cut(s) 830
BseBI CCWGG 4 cut(s) 148, 526, 670, 699
BseDI CCNNGG 4 cut(s) 146, 283, 810, 1068
BseGI GGATG 4 cut(s) 60, 165, 587, 877
BseJI GATNNNNATC 1 cut(s) 830
BseLI CCNNNNNNNGG 4 cut(s) 225, 398, 525, 669
BseMII CTCAG 3 cut(s) 11, 854, 1089
BseNI ACTGG 2 cut(s) 193, 577
BseRI GAGGAG 7 cut(s) 106, 169, 413, 531, 815, 890, 1021
BseSI GKGCMC 1 cut(s) 1113
BseX3I CGGCCG 1 cut(s) 692
BseXI GCAGC 4 cut(s) 541, 713, 1011, 1138
BsgI GTGCAG 2 cut(s) 641, 1018
Bsh1285I CGRYCG 1 cut(s) 695
BshFI GGCC 5 cut(s) 494, 694, 749, 766, 806
BshNI GGYRCC 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 695
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 6 cut(s) 414, 564, 691, 730, 750, 959
BslFI GGGAC 2 cut(s) 746, 1104
BslI CCNNNNNNNGG 4 cut(s) 225, 398, 525, 669
BsmAI GTCTC 1 cut(s) 980
BsmFI GGGAC 2 cut(s) 746, 1104
BsnI GGCC 5 cut(s) 494, 694, 749, 766, 806
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 26, 1113
Bsp143I GATC 3 cut(s) 501, 560, 773
Bsp19I CCATGG 1 cut(s) 810
BspANI GGCC 5 cut(s) 494, 694, 749, 766, 806
BspCNI CTCAG 3 cut(s) 12, 853, 1090
BspLI GGNNCC 5 cut(s) 230, 289, 674, 775, 1120
BspMI ACCTGC 1 cut(s) 663
BspPI GGATC 3 cut(s) 555, 768, 781
BspT107I GGYRCC 1 cut(s) 287
BsrI ACTGG 2 cut(s) 193, 577
BssECI CCNNGG 4 cut(s) 146, 283, 810, 1068
BssMI GATC 3 cut(s) 501, 560, 773
BssNI GRCGYC 2 cut(s) 288, 402
BssT1I CCWWGG 1 cut(s) 810
Bst2UI CCWGG 4 cut(s) 148, 526, 670, 699
Bst4CI ACNGT 2 cut(s) 88, 1072
Bst6I CTCTTC 4 cut(s) 399, 602, 933, 1098
BstACI GRCGYC 2 cut(s) 288, 402
BstBAI YACGTR 1 cut(s) 928
BstC8I GCNNGC 4 cut(s) 95, 227, 236, 892
BstDEI CTNAG 3 cut(s) 20, 840, 1098
BstDSI CCRYGG 2 cut(s) 810, 1068
BstF5I GGATG 4 cut(s) 60, 165, 587, 877
BstH2I RGCGCY 3 cut(s) 291, 349, 358
BstHHI GCGC 3 cut(s) 290, 348, 357
BstKTI GATC 3 cut(s) 504, 563, 776
BstMAI GTCTC 1 cut(s) 980
BstMBI GATC 3 cut(s) 501, 560, 773
BstMCI CGRYCG 1 cut(s) 695
BstMWI GCNNNNNNNGC 8 cut(s) 231, 235, 285, 294, 352, 354, 978, 1021
BstNI CCWGG 4 cut(s) 148, 526, 670, 699
BstSCI CCNGG 6 cut(s) 146, 524, 668, 697, 729, 957
BstSLI GKGCMC 1 cut(s) 1113
BstV1I GCAGC 4 cut(s) 541, 713, 1011, 1138
BstV2I GAAGAC 3 cut(s) 397, 610, 700
BstX2I RGATCY 3 cut(s) 501, 560, 773
BstYI RGATCY 3 cut(s) 501, 560, 773
BstZI CGGCCG 1 cut(s) 692
Bsu36I CCTNAGG 2 cut(s) 840, 1098
BsuRI GGCC 5 cut(s) 494, 694, 749, 766, 806
BtgI CCRYGG 2 cut(s) 810, 1068
BtsCI GGATG 4 cut(s) 60, 165, 587, 877
BtsI GCAGTG 2 cut(s) 988, 1001
BtsIMutI CAGTG 3 cut(s) 826, 988, 1001
BveI ACCTGC 1 cut(s) 663
Cac8I GCNNGC 4 cut(s) 95, 227, 236, 892
CfoI GCGC 3 cut(s) 290, 348, 357
Cfr13I GGNCC 4 cut(s) 484, 536, 764, 1118
CseI GACGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 943, 955
CviAII CATG 2 cut(s) 811, 835
CviQI GTAC 2 cut(s) 943, 955
DdeI CTNAG 3 cut(s) 20, 840, 1098
DinI GGCGCC 1 cut(s) 289
DpnI GATC 3 cut(s) 503, 562, 775
DpnII GATC 3 cut(s) 501, 560, 773
EaeI YGGCCR 3 cut(s) 492, 692, 747
EagI CGGCCG 1 cut(s) 692
Eam1104I CTCTTC 4 cut(s) 399, 602, 933, 1098
EarI CTCTTC 4 cut(s) 399, 602, 933, 1098
EciI GGCGGA 3 cut(s) 121, 221, 580
Ecl136II GAGCTC 1 cut(s) 24
EclXI CGGCCG 1 cut(s) 692
Eco130I CCWWGG 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 3 cut(s) 484, 536, 1118
Eco47III AGCGCT 1 cut(s) 347
Eco52I CGGCCG 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 1076
Eco81I CCTNAGG 2 cut(s) 840, 1098
Eco88I CYCGRG 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 24
EcoRII CCWGG 4 cut(s) 146, 524, 668, 697
EcoT14I CCWWGG 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 2 cut(s) 814, 838
FaiI YATR 7 cut(s) 812, 836, 923, 925, 948, 1055, 1133
FaqI GGGAC 2 cut(s) 746, 1104
FatI CATG 2 cut(s) 810, 834
FauI CCCGC 1 cut(s) 389
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 5 cut(s) 530, 695, 727, 1000, 1127
FokI GGATG 4 cut(s) 47, 152, 574, 884
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 530, 695, 727, 1000, 1127
GlaI GCGC 3 cut(s) 289, 347, 356
GluI GCNGC 5 cut(s) 530, 695, 727, 1000, 1127
GsuI CTGGAG 4 cut(s) 316, 691, 720, 1024
HaeII RGCGCY 3 cut(s) 291, 349, 358
HaeIII GGCC 5 cut(s) 494, 694, 749, 766, 806
HapII CCGG 6 cut(s) 414, 564, 691, 730, 750, 959
HgaI GACGC 1 cut(s) 391
HhaI GCGC 3 cut(s) 290, 348, 357
Hin1I GRCGYC 2 cut(s) 288, 402
Hin1II CATG 2 cut(s) 814, 838
Hin6I GCGC 3 cut(s) 288, 346, 355
HinP1I GCGC 3 cut(s) 288, 346, 355
HincII GTYRAC 2 cut(s) 475, 1138
HindII GTYRAC 2 cut(s) 475, 1138
HindIII AAGCTT 1 cut(s) 1057
HinfI GANTC 8 cut(s) 336, 410, 456, 515, 521, 685, 753, 988
HpaII CCGG 6 cut(s) 414, 564, 691, 730, 750, 959
HphI GGTGA 4 cut(s) 301, 316, 1020, 1037
Hpy166II GTNNAC 2 cut(s) 475, 1138
Hpy188I TCNGA 6 cut(s) 28, 77, 455, 520, 560, 773
Hpy188III TCNNGA 7 cut(s) 13, 64, 333, 499, 682, 718, 842
Hpy8I GTNNAC 2 cut(s) 475, 1138
Hpy99I CGWCG 5 cut(s) 32, 296, 443, 446, 500
HpyAV CCTTC 5 cut(s) 136, 208, 214, 259, 1035
HpyCH4III ACNGT 2 cut(s) 88, 1072
HpyCH4IV ACGT 4 cut(s) 30, 615, 927, 1113
HpyCH4V TGCA 6 cut(s) 93, 658, 759, 830, 999, 1126
HpyF10VI GCNNNNNNNGC 8 cut(s) 231, 235, 285, 294, 352, 354, 978, 1021
HpyF3I CTNAG 3 cut(s) 20, 840, 1098
HpySE526I ACGT 4 cut(s) 30, 615, 927, 1113
Hsp92I GRCGYC 2 cut(s) 288, 402
Hsp92II CATG 2 cut(s) 814, 838
HspAI GCGC 3 cut(s) 288, 346, 355
KasI GGCGCC 1 cut(s) 287
Kzo9I GATC 3 cut(s) 501, 560, 773
LmnI GCTCC 5 cut(s) 29, 37, 234, 362, 672
Lsp1109I GCAGC 4 cut(s) 541, 713, 1011, 1138
LweI GCATC 3 cut(s) 174, 393, 633
MaeII ACGT 4 cut(s) 30, 615, 927, 1113
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 503, 562, 775
MboI GATC 3 cut(s) 501, 560, 773
MflI RGATCY 3 cut(s) 501, 560, 773
MhlI GDGCHC 2 cut(s) 26, 1113
MluCI AATT 1 cut(s) 568
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 4 cut(s) 404, 509, 679, 982
MmeI TCCRAC 2 cut(s) 51, 243
MseI TTAA 2 cut(s) 783, 933
MspA1I CMGCKG 2 cut(s) 225, 1002
MspI CCGG 6 cut(s) 414, 564, 691, 730, 750, 959
MspR9I CCNGG 6 cut(s) 148, 526, 670, 699, 731, 959
MvaI CCWGG 4 cut(s) 148, 526, 670, 699
MwoI GCNNNNNNNGC 8 cut(s) 231, 235, 285, 294, 352, 354, 978, 1021
NarI GGCGCC 1 cut(s) 288
NciI CCSGG 2 cut(s) 731, 959
NcoI CCATGG 1 cut(s) 810
NdeII GATC 3 cut(s) 501, 560, 773
NlaIII CATG 2 cut(s) 814, 838
NlaIV GGNNCC 5 cut(s) 230, 289, 674, 775, 1120
NmeAIII GCCGAG 2 cut(s) 264, 378
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 405, 1119
PfeI GAWTC 4 cut(s) 336, 456, 521, 753
PflMI CCANNNNNTGG 2 cut(s) 225, 669
PkrI GCNGC 5 cut(s) 531, 696, 728, 1001, 1128
PleI GAGTC 4 cut(s) 404, 509, 679, 982
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 4 cut(s) 404, 509, 679, 982
Ppu21I YACGTR 1 cut(s) 928
PsiI TTATAA 1 cut(s) 1055
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 4 cut(s) 146, 524, 668, 697
PspGI CCWGG 4 cut(s) 146, 524, 668, 697
PspN4I GGNNCC 5 cut(s) 230, 289, 674, 775, 1120
PspPI GGNCC 4 cut(s) 484, 536, 764, 1118
PsuI RGATCY 3 cut(s) 501, 560, 773
PvuII CAGCTG 1 cut(s) 1002
RsaI GTAC 2 cut(s) 944, 956
RsaNI GTAC 2 cut(s) 943, 955
SacI GAGCTC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 783, 933
SatI GCNGC 5 cut(s) 530, 695, 727, 1000, 1127
Sau3AI GATC 3 cut(s) 501, 560, 773
Sau96I GGNCC 4 cut(s) 484, 536, 764, 1118
SchI GAGTC 4 cut(s) 404, 509, 679, 982
ScrFI CCNGG 6 cut(s) 148, 526, 670, 699, 731, 959
SduI GDGCHC 2 cut(s) 26, 1113
SfaNI GCATC 3 cut(s) 174, 393, 633
SfoI GGCGCC 1 cut(s) 289
SinI GGWCC 3 cut(s) 484, 536, 1118
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 1 cut(s) 568
SspDI GGCGCC 1 cut(s) 287
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 6 cut(s) 146, 524, 668, 697, 729, 957
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 2 cut(s) 88, 1072
TaiI ACGT 4 cut(s) 33, 618, 930, 1116
TaqI TCGA 6 cut(s) 207, 408, 474, 480, 498, 798
TaqII GACCGA 1 cut(s) 524
TasI AATT 1 cut(s) 568
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 4 cut(s) 336, 456, 521, 753
Tru1I TTAA 2 cut(s) 783, 933
Tru9I TTAA 2 cut(s) 783, 933
TscAI CASTG 3 cut(s) 826, 988, 1001
TseI GCWGC 4 cut(s) 529, 726, 999, 1126
TspDTI ATGAA 5 cut(s) 424, 448, 628, 633, 951
TspGWI ACGGA 2 cut(s) 20, 50
TspRI CASTG 3 cut(s) 826, 988, 1001
Van91I CCANNNNNTGG 2 cut(s) 225, 669
VpaK11BI GGWCC 3 cut(s) 484, 536, 1118
XmiI GTMKAC 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.