Rorug06G0172000

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003504
Physical Location & Seq
Forward (+)
25445854 .. 25447933
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0172000.1

Sequence Viewer

Length: 633 bp
ATGGCTTCTGTACTGTTGGTGCTGGAAATCTGGCTCCAAGAGAACCCGGCCGATAGGCAGATCTCGGAGATGATTAGTGAGTCTGCAAGACTTGCCAGACACTTTTGTGAAAAGAAATGGCCAGTTTTGGCATTCATTGATTCTCATCAACCTGAAAAGCTGGAAGACCCTTATCCCCTTCATTGTATCGAGGGCACTGATGAATCAAACTTGGTCCCTGCATTAAGTTGGTTGGAGAAAGAACCAAATGTCACAATCAGGCGCAAAGATTGCTATGATGGATTCGTAGGCTCAATTCAACCTGATGGTTCAAATGCTTTTGTTGATTGGGTGAAGATAAATCAGATCAGAACTTTATTAGTGGTAGGAGTATGCACGGACATCTGTGTTCTGGACTTTGTTTGTTCCACAATATCAGCTAGAAACCGTGGTTTTCTGACCCCTTTGGTGGACGTAGTGGTTTACTCGCGTGCCTGTGCCACATTTAATGTTCCTCTTCGGGTTGCCAGAAACACCAAAGGAGCTTTAGCTCACCCTCAGGAACTGATGCATCATATAGGACTCTACATGGCAAAGGAAAGAGGAGCCAAAATAGCAAATCAAGTGTCCTGGGTTGGAGCTAAAGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

210

Amino Acids

23.57

Weight (kDa)

6.07

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Isochorismatase PF00857 15 - 165 5.6e-20 Isochorismatase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 469
AcoI YGGCCR 2 cut(s) 48, 119
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 2 cut(s) 299, 312
AjnI CCWGG 1 cut(s) 608
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 6 cut(s) 160, 419, 524, 530, 620, 628
AluI AGCT 6 cut(s) 160, 419, 524, 530, 620, 628
AlwNI CAGNNNCTG 1 cut(s) 544
AoxI GGCC 2 cut(s) 48, 119
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 343, 524
AvaII GGWCC 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 171
BccI CCATC 2 cut(s) 272, 299
BciT130I CCWGG 1 cut(s) 610
BcnI CCSGG 1 cut(s) 47
BfaI CTAG 1 cut(s) 420
BglII AGATCT 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 47, 610
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 35, 216, 586
BmrFI CCNGG 2 cut(s) 47, 610
BmsI GCATC 2 cut(s) 537, 559
BpiI GAAGAC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 427, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 427, 609
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 197
BseX3I CGGCCG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 469
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 50, 121
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 2 cut(s) 50, 121
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 60, 345
BspANI GGCC 2 cut(s) 50, 121
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 1 cut(s) 469
BspLI GGNNCC 3 cut(s) 35, 216, 586
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 427, 609
BssMI GATC 2 cut(s) 60, 345
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 2 cut(s) 15, 428
Bst6I CTCTTC 1 cut(s) 501
BstAPI GCANNNNNTGC 2 cut(s) 92, 270
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 537
BstDSI CCRYGG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 63, 348
BstMBI GATC 2 cut(s) 60, 345
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 92, 270, 593
BstNI CCWGG 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 45, 608
BstSLI GKGCMC 1 cut(s) 197
BstUI CGCG 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 2 cut(s) 50, 121
BtgI CCRYGG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 568
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 537
DpnI GATC 2 cut(s) 62, 347
DpnII GATC 2 cut(s) 60, 345
EaeI YGGCCR 2 cut(s) 48, 119
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EclXI CGGCCG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 214
Eco52I CGGCCG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 552
FaeI CATG 1 cut(s) 571
FaiI YATR 6 cut(s) 276, 373, 555, 557, 569, 631
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 567
FspBI CTAG 1 cut(s) 420
GlaI GCGC 1 cut(s) 263
HaeIII GGCC 2 cut(s) 50, 121
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 571
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 5 cut(s) 80, 140, 203, 282, 561
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 343, 524
Hpy166II GTNNAC 2 cut(s) 451, 463
Hpy188I TCNGA 4 cut(s) 67, 345, 350, 438
Hpy188III TCNNGA 2 cut(s) 392, 539
Hpy8I GTNNAC 2 cut(s) 451, 463
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 15, 428
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 4 cut(s) 86, 221, 375, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 270, 593
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 1 cut(s) 571
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 60, 345
LmnI GCTCC 4 cut(s) 39, 521, 584, 617
LweI GCATC 2 cut(s) 537, 559
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 62, 347
MboI GATC 2 cut(s) 60, 345
MboII GAAGA 3 cut(s) 176, 346, 488
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 2 cut(s) 89, 555
MmeI TCCRAC 2 cut(s) 213, 595
MnlI CCTC 4 cut(s) 184, 504, 546, 575
Mox20I TGGCCA 1 cut(s) 121
Mph1103I ATGCAT 1 cut(s) 552
MscI TGGCCA 1 cut(s) 121
MseI TTAA 2 cut(s) 224, 486
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 121
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 47, 610
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 1 cut(s) 610
MvnI CGCG 1 cut(s) 469
MwoI GCNNNNNNNGC 3 cut(s) 92, 270, 593
NciI CCSGG 1 cut(s) 47
NdeII GATC 2 cut(s) 60, 345
NlaIII CATG 1 cut(s) 571
NlaIV GGNNCC 3 cut(s) 35, 216, 586
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 552
OliI CACNNNNGTG 1 cut(s) 105
PctI GAATGC 1 cut(s) 131
PfeI GAWTC 3 cut(s) 140, 203, 282
PleI GAGTC 2 cut(s) 88, 555
PpsI GAGTC 2 cut(s) 88, 555
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 3 cut(s) 35, 216, 586
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 224, 486
Sau3AI GATC 2 cut(s) 60, 345
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 89, 555
ScrFI CCNGG 2 cut(s) 47, 610
SduI GDGCHC 1 cut(s) 197
SetI ASST 9 cut(s) 154, 162, 304, 421, 456, 526, 532, 622, 630
SfaNI GCATC 2 cut(s) 537, 559
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 45, 608
TaaI ACNGT 2 cut(s) 15, 428
TaiI ACGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 294
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 3 cut(s) 140, 203, 282
Tru1I TTAA 2 cut(s) 224, 486
Tru9I TTAA 2 cut(s) 224, 486
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 124, 170, 216
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.