RLG00000012670

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003504
Physical Location & Seq
Forward (+)
21103465 .. 21106444
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012670

Sequence Viewer

Length: 1095 bp
ATGGAAAGCTACCGGAGAGTCGAGAAGCCGAAGCCGGAGCTCCCAATCAGCGAGAACGAGATCCGAATCACCACCCAGGGCGCCATCAGAAACTACATCAGCTATGCCACCACTCAGCTCCAGGATAAACAAGTCAACGAAATTGTCTTGAAAGCAATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGAGTTCCAATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTGCAATTACACTATCAACTAAGGAGTTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGCCAATGAAGATTCATATGTTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACGGCAACTATCAAGGTGGATATGGCAACCATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGCTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTGGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCTGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTGCCGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCTGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCCAGTGGGAATGATAGAGGTGCTGGTGGCTATGAAAGAGGTCCTGGTGGGTATGACAGAGGTACTGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCGAACCAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

365

Amino Acids

38.63

Weight (kDa)

9.83

Isoelectric Point (pI)

24.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 82 8.7e-16 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 80, 788, 809, 908
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 291, 973, 994
AfiI CCNNNNNNNGG 4 cut(s) 565, 632, 671, 710
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 494
AjnI CCWGG 4 cut(s) 75, 120, 952, 1086
AluBI AGCT 8 cut(s) 9, 40, 102, 118, 243, 377, 440, 603
AluI AGCT 8 cut(s) 9, 40, 102, 118, 243, 377, 440, 603
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 4 cut(s) 446, 663, 701, 950
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 3 cut(s) 446, 701, 950
BanI GGYRCC 4 cut(s) 80, 788, 809, 908
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 445
BccI CCATC 5 cut(s) 92, 245, 388, 567, 1051
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 4 cut(s) 77, 122, 954, 1088
BciVI GTATCC 2 cut(s) 521, 633
BfaI CTAG 2 cut(s) 389, 1071
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 2 cut(s) 521, 633
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 4 cut(s) 77, 122, 954, 1088
Bme18I GGWCC 3 cut(s) 446, 701, 950
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 4 cut(s) 446, 663, 701, 950
BmiI GGNNCC 5 cut(s) 82, 270, 790, 811, 910
BmrFI CCNGG 4 cut(s) 77, 122, 954, 1088
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 75, 76
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 4 cut(s) 565, 632, 671, 710
Bse118I RCCGGY 2 cut(s) 791, 812
Bse1I ACTGG 3 cut(s) 912, 979, 1000
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 4 cut(s) 77, 122, 954, 1088
BseDI CCNNGG 2 cut(s) 75, 76
BseGI GGATG 1 cut(s) 1062
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 4 cut(s) 565, 632, 671, 710
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 3 cut(s) 912, 979, 1000
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 445
BshFI GGCC 1 cut(s) 664
BshNI GGYRCC 4 cut(s) 80, 788, 809, 908
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 4 cut(s) 13, 35, 792, 813
BslFI GGGAC 3 cut(s) 174, 504, 1065
BslI CCNNNNNNNGG 4 cut(s) 565, 632, 671, 710
BsmFI GGGAC 3 cut(s) 174, 504, 1065
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 5 cut(s) 82, 270, 790, 811, 910
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 4 cut(s) 80, 788, 809, 908
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 2 cut(s) 791, 812
BsrI ACTGG 3 cut(s) 912, 979, 1000
BssAI RCCGGY 2 cut(s) 791, 812
BssECI CCNNGG 2 cut(s) 75, 76
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 4 cut(s) 77, 122, 954, 1088
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 200, 631
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 114, 342
BstF5I GGATG 1 cut(s) 1062
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 249, 1088
BstNI CCWGG 4 cut(s) 77, 122, 954, 1088
BstSCI CCNGG 4 cut(s) 75, 120, 952, 1086
BstV1I GCAGC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuI GTATCC 2 cut(s) 521, 633
BsuRI GGCC 1 cut(s) 664
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 1062
BtsIMutI CAGTG 2 cut(s) 186, 919
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 791, 812
Cfr13I GGNCC 4 cut(s) 446, 663, 701, 950
CseI GACGC 1 cut(s) 1074
Csp6I GTAC 3 cut(s) 290, 972, 993
CviAII CATG 1 cut(s) 311
CviQI GTAC 3 cut(s) 290, 972, 993
DdeI CTNAG 2 cut(s) 114, 342
DinI GGCGCC 1 cut(s) 82
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 200, 631
EarI CTCTTC 2 cut(s) 200, 631
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 3 cut(s) 446, 701, 950
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 2 cut(s) 701, 950
EcoRII CCWGG 4 cut(s) 75, 120, 952, 1086
EcoRV GATATC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
FaeI CATG 1 cut(s) 314
FaqI GGGAC 3 cut(s) 174, 504, 1065
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 1 cut(s) 1069
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 459
FspBI CTAG 2 cut(s) 389, 1071
GlaI GCGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 664
HapII CCGG 4 cut(s) 13, 35, 792, 813
HgaI GACGC 1 cut(s) 1074
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 18, 66, 304, 470
HpaII CCGG 4 cut(s) 13, 35, 792, 813
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 3 cut(s) 136, 647, 1064
Hpy188I TCNGA 2 cut(s) 65, 89
Hpy188III TCNNGA 5 cut(s) 22, 148, 227, 608, 699
Hpy8I GTNNAC 3 cut(s) 136, 647, 1064
HpyAV CCTTC 1 cut(s) 714
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 2 cut(s) 223, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 1088
HpyF3I CTNAG 2 cut(s) 114, 342
HpySE526I ACGT 1 cut(s) 493
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 81
KasI GGCGCC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 4 cut(s) 37, 45, 123, 382
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 389, 1071
MaeII ACGT 1 cut(s) 493
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 217, 479, 648
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 141, 327, 412
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 27, 298
MseI TTAA 1 cut(s) 350
MspI CCGG 4 cut(s) 13, 35, 792, 813
MspR9I CCNGG 4 cut(s) 77, 122, 954, 1088
MvaI CCWGG 4 cut(s) 77, 122, 954, 1088
MwoI GCNNNNNNNGC 2 cut(s) 249, 1088
NarI GGCGCC 1 cut(s) 81
NdeI CATATG 1 cut(s) 475
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 5 cut(s) 82, 270, 790, 811, 910
PasI CCCWGGG 1 cut(s) 76
PfeI GAWTC 2 cut(s) 66, 470
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 2 cut(s) 26, 298
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 2 cut(s) 26, 298
PpuMI RGGWCCY 2 cut(s) 701, 950
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 2 cut(s) 701, 950
Psp6I CCWGG 4 cut(s) 75, 120, 952, 1086
PspGI CCWGG 4 cut(s) 75, 120, 952, 1086
PspN4I GGNNCC 5 cut(s) 82, 270, 790, 811, 910
PspPI GGNCC 4 cut(s) 446, 663, 701, 950
PspPPI RGGWCCY 2 cut(s) 701, 950
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 3 cut(s) 291, 973, 994
RsaNI GTAC 3 cut(s) 290, 972, 993
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 4 cut(s) 446, 663, 701, 950
SchI GAGTC 2 cut(s) 27, 298
ScrFI CCNGG 4 cut(s) 77, 122, 954, 1088
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 82
SinI GGWCC 3 cut(s) 446, 701, 950
Sse9I AATT 3 cut(s) 141, 327, 412
SsiI CCGC 1 cut(s) 365
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 389, 1071
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 4 cut(s) 75, 120, 952, 1086
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 21, 481
TasI AATT 3 cut(s) 141, 327, 412
TfiI GAWTC 2 cut(s) 66, 470
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 186, 919
TseI GCWGC 1 cut(s) 458
TspGWI ACGGA 1 cut(s) 1069
TspRI CASTG 2 cut(s) 186, 919
VpaK11BI GGWCC 3 cut(s) 446, 701, 950
XspI CTAG 2 cut(s) 389, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.