RchiOBHm_Chr6g0285131

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003504
Physical Location & Seq
Reverse (-)
48500768 .. 48504884
4117 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25574

Sequence Viewer

Length: 1023 bp
ATGGAAAGCTACCGGAGAGTCGAGAAGCCGAAGCCGGAGCTCCCAATCAGCGAGAACGAGATCCGAATCACCACCCAGGGCGCCATCAGAAACTACATCAGCTATGCCACCACTCAGCTCCAGGATAAACAAGTCAACGAAATTGTCTTGAAAGCAATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGGGTTCCAATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTTCAATTACACTATCAACTAAGGAGTTAAACACAACTTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGATTCATATGGTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACGGCAACTATCAAGGTGGATATGGCAACTATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGCTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTGGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGAGGTCCTGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCCAGTGGGAATGATAGAGGTGCTGGTGGCTATGAAAGAGGTTCTGGTGGGTATGACAGAGGTACCGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

340

Amino Acids

36.66

Weight (kDa)

8.5

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 82 7.8e-16 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 910
AccB1I GGYRCC 4 cut(s) 80, 746, 847, 910
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 291, 912, 933
AfiI CCNNNNNNNGG 3 cut(s) 632, 671, 710
AgeI ACCGGT 1 cut(s) 913
AgsI TTSAA 2 cut(s) 151, 327
AjiI CACGTC 1 cut(s) 494
AjnI CCWGG 3 cut(s) 75, 120, 810
AluBI AGCT 8 cut(s) 9, 40, 102, 118, 243, 377, 440, 603
AluI AGCT 8 cut(s) 9, 40, 102, 118, 243, 377, 440, 603
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 913
Asp718I GGTACC 1 cut(s) 910
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 4 cut(s) 446, 663, 701, 808
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 3 cut(s) 446, 701, 808
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanI GGYRCC 4 cut(s) 80, 746, 847, 910
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 4 cut(s) 92, 245, 388, 990
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 3 cut(s) 77, 122, 812
BciVI GTATCC 2 cut(s) 521, 633
BfaI CTAG 2 cut(s) 389, 1010
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 2 cut(s) 521, 633
Bme1390I CCNGG 3 cut(s) 77, 122, 812
Bme18I GGWCC 3 cut(s) 446, 701, 808
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 4 cut(s) 446, 663, 701, 808
BmiI GGNNCC 6 cut(s) 82, 213, 270, 748, 849, 912
BmrFI CCNGG 3 cut(s) 77, 122, 812
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 75, 76
BsaWI WCCGGW 2 cut(s) 12, 913
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 671, 710
Bse118I RCCGGY 2 cut(s) 749, 913
Bse1I ACTGG 2 cut(s) 851, 939
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 3 cut(s) 77, 122, 812
BseDI CCNNGG 2 cut(s) 75, 76
BseGI GGATG 1 cut(s) 1001
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 632, 671, 710
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 851, 939
BseRI GAGGAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 664
BshNI GGYRCC 4 cut(s) 80, 746, 847, 910
BshTI ACCGGT 1 cut(s) 913
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 4 cut(s) 13, 35, 750, 914
BslFI GGGAC 3 cut(s) 174, 504, 1004
BslI CCNNNNNNNGG 3 cut(s) 632, 671, 710
BsmFI GGGAC 3 cut(s) 174, 504, 1004
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 6 cut(s) 82, 213, 270, 748, 849, 912
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 4 cut(s) 80, 746, 847, 910
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 2 cut(s) 749, 913
BsrI ACTGG 2 cut(s) 851, 939
BssAI RCCGGY 2 cut(s) 749, 913
BssECI CCNNGG 2 cut(s) 75, 76
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 3 cut(s) 77, 122, 812
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 200, 631
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 114, 342
BstF5I GGATG 1 cut(s) 1001
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 3 cut(s) 77, 122, 812
BstSCI CCNGG 3 cut(s) 75, 120, 810
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuI GTATCC 2 cut(s) 521, 633
BsuRI GGCC 1 cut(s) 664
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 1001
BtsIMutI CAGTG 2 cut(s) 186, 858
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 749, 913
Cfr13I GGNCC 4 cut(s) 446, 663, 701, 808
CseI GACGC 1 cut(s) 1013
Csp6I GTAC 3 cut(s) 290, 911, 932
CspAI ACCGGT 1 cut(s) 913
CviAII CATG 1 cut(s) 311
CviQI GTAC 3 cut(s) 290, 911, 932
DdeI CTNAG 2 cut(s) 114, 342
DinI GGCGCC 1 cut(s) 82
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 200, 631
EarI CTCTTC 2 cut(s) 200, 631
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 3 cut(s) 446, 701, 808
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 2 cut(s) 701, 808
EcoRII CCWGG 3 cut(s) 75, 120, 810
EcoRV GATATC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
FaeI CATG 1 cut(s) 314
FaqI GGGAC 3 cut(s) 174, 504, 1004
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 475
FokI GGATG 1 cut(s) 1008
FriOI GRGCYC 1 cut(s) 42
FspBI CTAG 2 cut(s) 389, 1010
GlaI GCGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 664
HapII CCGG 4 cut(s) 13, 35, 750, 914
HgaI GACGC 1 cut(s) 1013
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 18, 66, 304, 470
HpaII CCGG 4 cut(s) 13, 35, 750, 914
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 3 cut(s) 136, 647, 1003
Hpy188I TCNGA 2 cut(s) 65, 89
Hpy188III TCNNGA 5 cut(s) 22, 148, 227, 608, 699
Hpy8I GTNNAC 3 cut(s) 136, 647, 1003
HpyAV CCTTC 1 cut(s) 714
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 2 cut(s) 114, 342
HpySE526I ACGT 1 cut(s) 493
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 81
KasI GGCGCC 1 cut(s) 80
KpnI GGTACC 1 cut(s) 914
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 4 cut(s) 37, 45, 123, 382
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 389, 1010
MaeII ACGT 1 cut(s) 493
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 217, 479, 648
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 141, 327, 412
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 27, 298
MseI TTAA 1 cut(s) 350
MspI CCGG 4 cut(s) 13, 35, 750, 914
MspR9I CCNGG 3 cut(s) 77, 122, 812
MvaI CCWGG 3 cut(s) 77, 122, 812
MwoI GCNNNNNNNGC 1 cut(s) 249
NarI GGCGCC 1 cut(s) 81
NdeI CATATG 1 cut(s) 475
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 6 cut(s) 82, 213, 270, 748, 849, 912
PasI CCCWGGG 1 cut(s) 76
PfeI GAWTC 2 cut(s) 66, 470
PfoI TCCNGGA 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 913
PleI GAGTC 2 cut(s) 26, 298
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 2 cut(s) 26, 298
PpuMI RGGWCCY 2 cut(s) 701, 808
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 2 cut(s) 701, 808
Psp6I CCWGG 3 cut(s) 75, 120, 810
PspGI CCWGG 3 cut(s) 75, 120, 810
PspN4I GGNNCC 6 cut(s) 82, 213, 270, 748, 849, 912
PspPI GGNCC 4 cut(s) 446, 663, 701, 808
PspPPI RGGWCCY 2 cut(s) 701, 808
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 3 cut(s) 291, 912, 933
RsaNI GTAC 3 cut(s) 290, 911, 932
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 4 cut(s) 446, 663, 701, 808
SchI GAGTC 2 cut(s) 27, 298
ScrFI CCNGG 3 cut(s) 77, 122, 812
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 82
SinI GGWCC 3 cut(s) 446, 701, 808
Sse9I AATT 3 cut(s) 141, 327, 412
SsiI CCGC 1 cut(s) 365
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 389, 1010
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 75, 120, 810
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 21, 481
TasI AATT 3 cut(s) 141, 327, 412
TfiI GAWTC 2 cut(s) 66, 470
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 186, 858
TspDTI ATGAA 9 cut(s) 462, 480, 702, 732, 753, 792, 854, 896, 959
TspGWI ACGGA 1 cut(s) 1008
TspRI CASTG 2 cut(s) 186, 858
VpaK11BI GGWCC 3 cut(s) 446, 701, 808
XspI CTAG 2 cut(s) 389, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.