Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

50653648 .. 50657944

Gene Structure 4297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG283300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGGGTTCCAATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTTCAATTACACTATCAACTAAGGAGTTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGATTCATATGGTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACGGCAACTATCAAGGTGGATATGGCAACTATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGCTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTGGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTACCGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCCGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCTGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCCAGTGGGAATGATAGAGGTGCTGGTGGCTATGAAAGAGGTCCTGGTGGGTATGACAGAGGTACTGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCGAACCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

325

Amino Acids

33.94

Weight (kDa)

9.88

Isoelectric Point (pI)

19.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	632
AccB1I	GGYRCC	4 cut(s)	590, 632, 692, 791
AciI	CCGC	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	4 cut(s)	135, 634, 856, 877
AfiI	CCNNNNNNNGG	3 cut(s)	476, 515, 554
AgeI	ACCGGT	1 cut(s)	635
AgsI	TTSAA	1 cut(s)	171
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	835, 969
AluBI	AGCT	4 cut(s)	87, 221, 284, 447
AluI	AGCT	4 cut(s)	87, 221, 284, 447
AoxI	GGCC	1 cut(s)	506
AsiGI	ACCGGT	1 cut(s)	635
Asp718I	GGTACC	1 cut(s)	632
AspS9I	GGNCC	4 cut(s)	290, 507, 545, 833
AvaII	GGWCC	3 cut(s)	290, 545, 833
BanI	GGYRCC	4 cut(s)	590, 632, 692, 791
BauI	CACGAG	1 cut(s)	285
BccI	CCATC	3 cut(s)	89, 232, 934
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	837, 971
BciVI	GTATCC	2 cut(s)	365, 477
BfaI	CTAG	2 cut(s)	233, 954
BfuI	GTATCC	2 cut(s)	365, 477
Bme1390I	CCNGG	2 cut(s)	837, 971
Bme18I	GGWCC	3 cut(s)	290, 545, 833
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	290, 507, 545, 833
BmiI	GGNNCC	6 cut(s)	57, 114, 592, 634, 694, 793
BmrFI	CCNGG	2 cut(s)	837, 971
BmsI	GCATC	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	3 cut(s)	476, 515, 554
Bse118I	RCCGGY	3 cut(s)	593, 635, 695
Bse1I	ACTGG	3 cut(s)	795, 862, 883
BseBI	CCWGG	2 cut(s)	837, 971
BseGI	GGATG	1 cut(s)	945
BseLI	CCNNNNNNNGG	3 cut(s)	476, 515, 554
BseNI	ACTGG	3 cut(s)	795, 862, 883
BseRI	GAGGAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	4 cut(s)	590, 632, 692, 791
BshTI	ACCGGT	1 cut(s)	635
BsiSI	CCGG	3 cut(s)	594, 636, 696
BslFI	GGGAC	3 cut(s)	18, 348, 948
BslI	CCNNNNNNNGG	3 cut(s)	476, 515, 554
BsmFI	GGGAC	3 cut(s)	18, 348, 948
BsnI	GGCC	1 cut(s)	508
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	508
BspLI	GGNNCC	6 cut(s)	57, 114, 592, 634, 694, 793
BspT107I	GGYRCC	4 cut(s)	590, 632, 692, 791
BsrFI	RCCGGY	3 cut(s)	593, 635, 695
BsrI	ACTGG	3 cut(s)	795, 862, 883
BssAI	RCCGGY	3 cut(s)	593, 635, 695
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	837, 971
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	2 cut(s)	44, 475
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	945
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 971
BstNI	CCWGG	2 cut(s)	837, 971
BstSCI	CCNGG	2 cut(s)	835, 969
BsuI	GTATCC	2 cut(s)	365, 477
BsuRI	GGCC	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	945
BtsIMutI	CAGTG	2 cut(s)	30, 802
Cfr10I	RCCGGY	3 cut(s)	593, 635, 695
Cfr13I	GGNCC	4 cut(s)	290, 507, 545, 833
CseI	GACGC	1 cut(s)	957
Csp6I	GTAC	4 cut(s)	134, 633, 855, 876
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	1 cut(s)	155
CviQI	GTAC	4 cut(s)	134, 633, 855, 876
DdeI	CTNAG	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	44, 475
EarI	CTCTTC	2 cut(s)	44, 475
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	3 cut(s)	290, 545, 833
Eco57I	CTGAAG	1 cut(s)	534
EcoO109I	RGGNCCY	2 cut(s)	545, 833
EcoRII	CCWGG	2 cut(s)	835, 969
EcoRV	GATATC	1 cut(s)	215
FaeI	CATG	1 cut(s)	158
FaqI	GGGAC	3 cut(s)	18, 348, 948
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	319
FokI	GGATG	1 cut(s)	952
FspBI	CTAG	2 cut(s)	233, 954
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	3 cut(s)	594, 636, 696
HgaI	GACGC	1 cut(s)	957
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	2 cut(s)	148, 314
HpaII	CCGG	3 cut(s)	594, 636, 696
Hpy166II	GTNNAC	2 cut(s)	491, 947
Hpy188III	TCNNGA	3 cut(s)	71, 452, 543
Hpy8I	GTNNAC	2 cut(s)	491, 947
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 971
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	158
KpnI	GGTACC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	226
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	233, 954
MaeII	ACGT	1 cut(s)	337
MboII	GAAGA	3 cut(s)	61, 323, 492
MluCI	AATT	2 cut(s)	171, 256
MlyI	GAGTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	194
MspI	CCGG	3 cut(s)	594, 636, 696
MspR9I	CCNGG	2 cut(s)	837, 971
MvaI	CCWGG	2 cut(s)	837, 971
MwoI	GCNNNNNNNGC	2 cut(s)	93, 971
NdeI	CATATG	1 cut(s)	319
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	6 cut(s)	57, 114, 592, 634, 694, 793
PfeI	GAWTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	635
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	2 cut(s)	545, 833
Psp5II	RGGWCCY	2 cut(s)	545, 833
Psp6I	CCWGG	2 cut(s)	835, 969
PspGI	CCWGG	2 cut(s)	835, 969
PspN4I	GGNNCC	6 cut(s)	57, 114, 592, 634, 694, 793
PspPI	GGNCC	4 cut(s)	290, 507, 545, 833
PspPPI	RGGWCCY	2 cut(s)	545, 833
RsaI	GTAC	4 cut(s)	135, 634, 856, 877
RsaNI	GTAC	4 cut(s)	134, 633, 855, 876
SaqAI	TTAA	1 cut(s)	194
Sau96I	GGNCC	4 cut(s)	290, 507, 545, 833
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	837, 971
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	3 cut(s)	290, 545, 833
Sse9I	AATT	2 cut(s)	171, 256
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	2 cut(s)	233, 954
StyD4I	CCNGG	2 cut(s)	835, 969
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	325
TasI	AATT	2 cut(s)	171, 256
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	30, 802
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	2 cut(s)	30, 802
VpaK11BI	GGWCC	3 cut(s)	290, 545, 833
XspI	CTAG	2 cut(s)	233, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.