AT3G07030

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003504
Physical Location & Seq
Reverse (-)
2222526 .. 2225522
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07030.2

Sequence Viewer

Length: 1218 bp
ATGGATAGATACCAGAGAGTCGCTAAACCGAAACCAGAGTCTCCGATTAACGAGAATGAGATCCGTATCACCAGTAAAGGCCTTATCCGAAACTACATCAGTTATGCCACCAGTCTTCTTCAGGAGAAAAGTGTTAAAGACATTGTGTTGAAGGCAATGGGGCAGGCAATCAGCAAGACTGTGGCTATCTCTGAGATACTAAAAAATAAAATCCCAGGTTTGCATCAAGATATTGCAATCAGTTCTATTAGCATTACTGATGTCTGGGAGCCTACTGAGGAGGGTTTGTTTCCGGTGGAGTTGACGCGCCATGTTTCCATGATTTCAATCACATTGTCATTGAGCGAGCTAAACAAAGATTCTCCTGGGTATCAAGCTCCAGCACAGTCAGATCAGTCTAAGCCTCAATATCAGCCACAACAAGGGAGACAAGCCCGCCTACCATACAATGCTTATGGTGAAGAGGGAGAGGTCGTGGCAGAGGGAGAAGCAGGGGAAGAGGTGGATATGGAAACTACCAAGGGAGTTATGAAGGAAAAGACCAAGGGAACTATCAAGAAGATTATCAAGACAATGAAGGTGGGTATTCAAACTCGGGCAGAGGCCGTGGACGTGGTGGACGAAGCTATGGCTATCGTGGGTGGCAGAGGCGGGTATGGTGGTGGGAGAGATGGTGGATATGGTGGTGGGAGAGATGACGGGTATGGGGAAAGGAGAAATGACGGGTATGGGGAAAGGAGAAATGACAGGTATGGTGGAGGAAGAGACGACGGGTATGGTGGAGGGAGAGATGACGGATATGGTGGAGGCAGAAACGATGGATATGGGGGAAGAAGAGGCGGATTTCGTGGCGGTCGTGGTGGAGGCAGAGATGAAGGATACGGTGGCGGCCGAGGTGGATATGGAGGTAGAAGTGGCGGCCAAGGTGATGGGTATGGCGGAGGCAGAGGTGACGGGTATGGTGGAGGCAGAGGTGACGGGTATGGTGGAGGCAGAGGTGATGGCTATGGTGGTGGCCGAGTTGATAGGTATGATGGAGGAAGACGTGATGGCTATGGTGGAGGCCGATATGATGGCTATGGTGGGGGTAAAAGTGATGGTTATGGAGGTGGCCGAGGCGGATACCGTGGAGGTAGAGGCGGATATGGTCGTGGACGTGGAAGGATGGGTAATGGTGGTCGTTCAAGGGATGGTGCTAGTAACCAAAACGAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

405

Amino Acids

42.5

Weight (kDa)

9.15

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 76 3.6e-15 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 307
AciI CCGC 9 cut(s) 436, 651, 840, 852, 888, 918, 939, 1119, 1140
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 4 cut(s) 889, 919, 1015, 1111
AcuI CTGAAG 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 4 cut(s) 151, 327, 590, 1185
AjiI CACGTC 3 cut(s) 613, 1046, 1157
AjnI CCWGG 2 cut(s) 214, 364
AluBI AGCT 3 cut(s) 349, 377, 626
AluI AGCT 3 cut(s) 349, 377, 626
Alw26I GTCTC 3 cut(s) 45, 421, 759
AlwI GGATC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 594
AoxI GGCC 7 cut(s) 79, 603, 889, 919, 1015, 1063, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspLEI GCGC 1 cut(s) 309
AsuHPI GGTGA 6 cut(s) 61, 470, 938, 962, 986, 1010
AvaI CYCGRG 1 cut(s) 594
BbsI GAAGAC 2 cut(s) 107, 1048
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 2 cut(s) 216, 366
BciVI GTATCC 2 cut(s) 872, 1115
BcoDI GTCTC 3 cut(s) 45, 421, 759
BfaI CTAG 1 cut(s) 1197
BfuI GTATCC 2 cut(s) 872, 1115
BisI GCNGC 2 cut(s) 889, 919
BlsI GCNGC 2 cut(s) 890, 920
Bme1390I CCNGG 2 cut(s) 216, 366
BmeT110I CYCGRG 1 cut(s) 594
BmgBI CACGTC 3 cut(s) 613, 1046, 1157
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 216, 366
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 107, 1048
BpmI CTGGAG 1 cut(s) 363
BsaBI GATNNNNATC 2 cut(s) 65, 326
BsaJI CCNNGG 9 cut(s) 214, 365, 519, 543, 606, 892, 922, 1114, 1126
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 6 cut(s) 272, 302, 459, 489, 658, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 72, 111
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 2 cut(s) 65, 326
BseBI CCWGG 2 cut(s) 216, 366
BseDI CCNNGG 9 cut(s) 214, 365, 519, 543, 606, 892, 922, 1114, 1126
BseGI GGATG 2 cut(s) 1170, 1195
BseJI GATNNNNATC 2 cut(s) 65, 326
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 183, 267
BseNI ACTGG 2 cut(s) 72, 111
BseRI GAGGAG 1 cut(s) 293
BseX3I CGGCCG 1 cut(s) 889
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 2 cut(s) 856, 892
BshFI GGCC 7 cut(s) 81, 605, 891, 921, 1017, 1065, 1113
BsiEI CGRYCG 2 cut(s) 856, 892
BsiHKCI CYCGRG 1 cut(s) 594
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 3 cut(s) 45, 421, 759
BsmBI CGTCTC 1 cut(s) 759
BsnI GGCC 7 cut(s) 81, 605, 891, 921, 1017, 1065, 1113
BsoBI CYCGRG 1 cut(s) 594
Bsp143I GATC 2 cut(s) 60, 391
BspACI CCGC 9 cut(s) 436, 651, 840, 852, 888, 918, 939, 1119, 1140
BspANI GGCC 7 cut(s) 81, 605, 891, 921, 1017, 1065, 1113
BspCNI CTCAG 2 cut(s) 184, 268
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 72, 111
BssECI CCNNGG 9 cut(s) 214, 365, 519, 543, 606, 892, 922, 1114, 1126
BssMI GATC 2 cut(s) 60, 391
BssT1I CCWWGG 3 cut(s) 519, 543, 922
Bst2UI CCWGG 2 cut(s) 216, 366
Bst4CI ACNGT 4 cut(s) 181, 387, 884, 1127
Bst6I CTCTTC 4 cut(s) 456, 492, 757, 829
BstC8I GCNNGC 3 cut(s) 165, 347, 436
BstDEI CTNAG 3 cut(s) 192, 276, 399
BstDSI CCRYGG 2 cut(s) 606, 1126
BstF5I GGATG 2 cut(s) 1170, 1195
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 2 cut(s) 63, 394
BstMAI GTCTC 3 cut(s) 45, 421, 759
BstMBI GATC 2 cut(s) 60, 391
BstMCI CGRYCG 2 cut(s) 856, 892
BstNI CCWGG 2 cut(s) 216, 366
BstSCI CCNGG 2 cut(s) 214, 364
BstUI CGCG 1 cut(s) 307
BstV2I GAAGAC 2 cut(s) 107, 1048
BstX2I RGATCY 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 929
BstYI RGATCY 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 889
BsuI GTATCC 2 cut(s) 872, 1115
BsuRI GGCC 7 cut(s) 81, 605, 891, 921, 1017, 1065, 1113
BtgI CCRYGG 2 cut(s) 606, 1126
BtrI CACGTC 3 cut(s) 613, 1046, 1157
BtsCI GGATG 2 cut(s) 1170, 1195
Cac8I GCNNGC 3 cut(s) 165, 347, 436
CfoI GCGC 1 cut(s) 309
CseI GACGC 1 cut(s) 313
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 2 cut(s) 311, 319
DdeI CTNAG 3 cut(s) 192, 276, 399
DpnI GATC 2 cut(s) 62, 393
DpnII GATC 2 cut(s) 60, 391
EaeI YGGCCR 4 cut(s) 889, 919, 1015, 1111
EagI CGGCCG 1 cut(s) 889
Eam1104I CTCTTC 4 cut(s) 456, 492, 757, 829
EarI CTCTTC 4 cut(s) 456, 492, 757, 829
EciI GGCGGA 4 cut(s) 855, 954, 1134, 1155
EclXI CGGCCG 1 cut(s) 889
Eco130I CCWWGG 3 cut(s) 519, 543, 922
Eco147I AGGCCT 1 cut(s) 81
Eco52I CGGCCG 1 cut(s) 889
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 594
EcoRII CCWGG 2 cut(s) 214, 364
EcoT14I CCWWGG 3 cut(s) 519, 543, 922
ErhI CCWWGG 3 cut(s) 519, 543, 922
Esp3I CGTCTC 1 cut(s) 759
FaeI CATG 2 cut(s) 314, 322
FatI CATG 2 cut(s) 310, 318
FauI CCCGC 2 cut(s) 443, 644
Fnu4HI GCNGC 2 cut(s) 889, 919
FokI GGATG 2 cut(s) 1177, 1202
Fsp4HI GCNGC 2 cut(s) 889, 919
FspBI CTAG 1 cut(s) 1197
GlaI GCGC 1 cut(s) 308
GluI GCNGC 2 cut(s) 889, 919
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 7 cut(s) 81, 605, 891, 921, 1017, 1065, 1113
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 309
Hin1II CATG 2 cut(s) 314, 322
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 3 cut(s) 18, 38, 359
HpaII CCGG 1 cut(s) 293
HphI GGTGA 6 cut(s) 61, 470, 938, 962, 986, 1010
Hpy166II GTNNAC 4 cut(s) 303, 610, 619, 1154
Hpy188I TCNGA 4 cut(s) 45, 89, 193, 391
Hpy188III TCNNGA 4 cut(s) 122, 227, 556, 568
Hpy8I GTNNAC 4 cut(s) 303, 610, 619, 1154
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 5 cut(s) 145, 526, 571, 869, 1155
HpyCH4III ACNGT 4 cut(s) 181, 387, 884, 1127
HpyCH4IV ACGT 3 cut(s) 612, 1045, 1156
HpyCH4V TGCA 2 cut(s) 223, 236
HpyF3I CTNAG 3 cut(s) 192, 276, 399
HpySE526I ACGT 3 cut(s) 612, 1045, 1156
Hsp92II CATG 2 cut(s) 314, 322
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 60, 391
LmnI GCTCC 2 cut(s) 268, 382
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 1197
MaeII ACGT 3 cut(s) 612, 1045, 1156
MaeIII GTNAC 3 cut(s) 950, 974, 1199
MalI GATC 2 cut(s) 62, 393
MboI GATC 2 cut(s) 60, 391
MboII GAAGA 9 cut(s) 107, 110, 473, 509, 571, 774, 843, 846, 1053
MflI RGATCY 1 cut(s) 60
MlyI GAGTC 2 cut(s) 27, 47
MseI TTAA 2 cut(s) 48, 135
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 216, 366
MvaI CCWGG 2 cut(s) 216, 366
MvnI CGCG 1 cut(s) 307
NdeII GATC 2 cut(s) 60, 391
NlaIII CATG 2 cut(s) 314, 322
NlaIV GGNNCC 1 cut(s) 270
NmeAIII GCCGAG 3 cut(s) 917, 1043, 1139
NmuCI GTSAC 2 cut(s) 950, 974
PceI AGGCCT 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 618, 853
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 2 cut(s) 890, 920
PleI GAGTC 2 cut(s) 26, 46
PpsI GAGTC 2 cut(s) 26, 46
Psp6I CCWGG 2 cut(s) 214, 364
PspGI CCWGG 2 cut(s) 214, 364
PspN4I GGNNCC 1 cut(s) 270
PsuI RGATCY 1 cut(s) 60
SaqAI TTAA 2 cut(s) 48, 135
SatI GCNGC 2 cut(s) 889, 919
Sau3AI GATC 2 cut(s) 60, 391
SchI GAGTC 2 cut(s) 27, 47
ScrFI CCNGG 2 cut(s) 216, 366
SfaNI GCATC 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 9 cut(s) 436, 651, 840, 852, 888, 918, 939, 1119, 1140
SspMI CTAG 1 cut(s) 1197
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 214, 364
StyI CCWWGG 3 cut(s) 519, 543, 922
TaaI ACNGT 4 cut(s) 181, 387, 884, 1127
TaiI ACGT 3 cut(s) 615, 1048, 1159
TauI GCSGC 2 cut(s) 891, 921
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 48, 135
Tru9I TTAA 2 cut(s) 48, 135
TseFI GTSAC 2 cut(s) 950, 974
Tsp45I GTSAC 2 cut(s) 950, 974
TspDTI ATGAA 3 cut(s) 545, 590, 888
TspGWI ACGGA 2 cut(s) 53, 810
XspI CTAG 1 cut(s) 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.