MD05G1178300.v1.1

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003504
Physical Location & Seq
Reverse (-)
30488620 .. 30492636
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1178300.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGAAAAGTTTCAGAAGGTCGAGAAGCCGAGGCCCGAAGTGCCCATCAACGAGAACGAGATCCGAATCACCACCCAAGGCTCTATCAGAAACTACATCAGCTATGCCACCACTCTGCTTCAGGATAAGCGTGGAAAAGAAATTGTCTTGAAGGCAATGGGACAGGCAATTAACAAGACAGTTGCAATTGCTGAAATTATAAAGGTCACTATCTTGCTTGCTCTCTTTAAACACAACGCACGCCGCCGCCGCCACCCCCCCCGCACTGTGGAAACGACTCGTCATGTCTCAATGATTTCAATCACATTATCAACAAAGGAGCTAAACACAAACTCTCCCGGGTATCAAGCCCCATATGCTGCGGATCAATCAAAGCCACAGCCGAATTACCAACAGCAGCAGCAACCAAAGCAAGCACGTGTTCCTTACAATGCTGTTAATGAAGGTGATGATTCGTATGGCCGGGGACGGGGACGGGGACGTGGTAGAGGAAGAGGCCGGAATTGGGGCAGGGGAGGAGGGTATGACAATTATCAAGGTGGATATGGAAACCCTCAAGGTGGATATGGGAACTATCAAGGTGGAAACCCTCAAGGTGGATATGGGAACTATCAAGGTGGCTATAGAAACTATCAAGATAATGATGGATATTCAAATCGGGGACAAGGTGGTGGACGTGGTAGAGGTTGGGGTTACCGTGGTGCTGGTTATGAAAGGAATGGTGGTGGCTATGAAAGGGGTGCTGGTGGGGGGTATGAAAGAGGTGGTGCTGGTGGAGGTTACGAAAGAGGTGGTGCTGGTGGAGGTTACGAAAGAGGTGGTGCTGGTGGTGGTTACGAAAGAGGTGGTGCTGGTGGGGGTTACGAAAGGGGTGGTGAAAGAGGTGGTGCTGGTGGGGGTTATGAGAAAGACGGTGCTGGTGGAGGTTATGAGAGAGGTGGTGCTGGCGGGTATGAGAGAGGTGGTGCTCGCAGGTATGAGAGAGGTGGTGCTCGCAGGTATGAGAGAGGCGGTGCTGGTGGATACGAGAGAGGTGCTGGTGGATACGAGAGAGGTGCTGGTGGTGGATACGAGAGAGGTGCTGGTGGATATGAACGAGGTGGCAGAGGTGGAGGGGGCAGAGGGTACAACCAGGGAAAAGGACGGACAGGTGGGCGCACAAGGGGTGGTGGAACTGGAAACCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

397

Amino Acids

41.71

Weight (kDa)

10.07

Isoelectric Point (pI)

25.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 71 3.2e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
Acc36I ACCTGC 2 cut(s) 963, 987
AciI CCGC 7 cut(s) 244, 247, 250, 262, 362, 948, 1011
AclWI GGATC 2 cut(s) 55, 372
AcoI YGGCCR 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 1 cut(s) 1127
AfiI CCNNNNNNNGG 5 cut(s) 268, 469, 505, 560, 596
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 3 cut(s) 151, 300, 654
AjiI CACGTC 2 cut(s) 482, 677
AjnI CCWGG 1 cut(s) 1131
AluBI AGCT 2 cut(s) 102, 322
AluI AGCT 2 cut(s) 102, 322
Alw21I GWGCWC 2 cut(s) 970, 994
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 55, 372
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 3 cut(s) 32, 460, 496
ApeKI GCWGC 3 cut(s) 359, 397, 400
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 1158
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 3 cut(s) 339, 340, 464
AsuHPI GGTGA 3 cut(s) 61, 458, 887
AvaI CYCGRG 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 45
BbrPI CACGTG 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 970, 994
BbvI GCAGC 3 cut(s) 346, 409, 412
BccI CCATC 2 cut(s) 53, 638
BcgI CGANNNNNNTGC 6 cut(s) 1016, 1037, 1050, 1061, 1071, 1095
BciT130I CCWGG 1 cut(s) 1133
BciVI GTATCC 3 cut(s) 1016, 1037, 1061
BcnI CCSGG 3 cut(s) 339, 340, 464
BcoDI GTCTC 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 622
BfuAI ACCTGC 2 cut(s) 963, 987
BfuI GTATCC 3 cut(s) 1016, 1037, 1061
BisI GCNGC 6 cut(s) 244, 247, 250, 360, 398, 401
BlsI GCNGC 6 cut(s) 245, 248, 251, 361, 399, 402
Bme1390I CCNGG 4 cut(s) 339, 340, 464, 1133
BmeT110I CYCGRG 1 cut(s) 338
BmgBI CACGTC 2 cut(s) 482, 677
BmgT120I GGNCC 1 cut(s) 33
BmrFI CCNGG 4 cut(s) 339, 340, 464, 1133
BpuEI CTTGAG 2 cut(s) 540, 576
BpuMI CCSGG 3 cut(s) 339, 340, 464
BsaAI YACGTR 1 cut(s) 419
BsaBI GATNNNNATC 2 cut(s) 65, 299
BsaJI CCNNGG 6 cut(s) 29, 76, 338, 463, 697, 1132
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 5 cut(s) 268, 469, 505, 560, 596
Bse1I ACTGG 1 cut(s) 1180
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 2 cut(s) 65, 299
BseBI CCWGG 1 cut(s) 1133
BseDI CCNNGG 6 cut(s) 29, 76, 338, 463, 697, 1132
BseJI GATNNNNATC 2 cut(s) 65, 299
BseLI CCNNNNNNNGG 5 cut(s) 268, 469, 505, 560, 596
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 1180
BseRI GAGGAG 1 cut(s) 531
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 3 cut(s) 346, 409, 412
BshFI GGCC 3 cut(s) 34, 462, 498
BsiHKAI GWGCWC 2 cut(s) 970, 994
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 3 cut(s) 339, 463, 499
BslFI GGGAC 5 cut(s) 174, 480, 486, 492, 675
BslI CCNNNNNNNGG 5 cut(s) 268, 469, 505, 560, 596
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 5 cut(s) 174, 480, 486, 492, 675
BsnI GGCC 3 cut(s) 34, 462, 498
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 3 cut(s) 45, 970, 994
Bsp143I GATC 2 cut(s) 60, 364
BspACI CCGC 7 cut(s) 244, 247, 250, 262, 362, 948, 1011
BspANI GGCC 3 cut(s) 34, 462, 498
BspMI ACCTGC 2 cut(s) 963, 987
BspPI GGATC 2 cut(s) 55, 372
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 1180
BssECI CCNNGG 6 cut(s) 29, 76, 338, 463, 697, 1132
BssMI GATC 2 cut(s) 60, 364
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 1133
Bst4CI ACNGT 4 cut(s) 181, 268, 698, 914
Bst6I CTCTTC 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 6 cut(s) 219, 241, 414, 946, 970, 994
BstDSI CCRYGG 1 cut(s) 697
BstEII GGTNACC 1 cut(s) 692
BstHHI GCGC 1 cut(s) 1158
BstKTI GATC 2 cut(s) 63, 367
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 2 cut(s) 60, 364
BstMWI GCNNNNNNNGC 4 cut(s) 40, 249, 356, 409
BstNI CCWGG 1 cut(s) 1133
BstPI GGTNACC 1 cut(s) 692
BstSCI CCNGG 4 cut(s) 337, 338, 462, 1131
BstSFI CTRYAG 1 cut(s) 622
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 346, 409, 412
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuI GTATCC 3 cut(s) 1016, 1037, 1061
BsuRI GGCC 3 cut(s) 34, 462, 498
BtgI CCRYGG 1 cut(s) 697
BtrI CACGTC 2 cut(s) 482, 677
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 2 cut(s) 963, 987
Cac8I GCNNGC 6 cut(s) 219, 241, 414, 946, 970, 994
CfoI GCGC 1 cut(s) 1158
Cfr13I GGNCC 1 cut(s) 33
Cfr9I CCCGGG 1 cut(s) 338
Csp6I GTAC 1 cut(s) 1126
CviAII CATG 1 cut(s) 284
CviQI GTAC 1 cut(s) 1126
DpnI GATC 2 cut(s) 62, 366
DpnII GATC 2 cut(s) 60, 364
DraI TTTAAA 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 692
EcoO65I GGTNACC 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 1131
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 287
FaqI GGGAC 5 cut(s) 174, 480, 486, 492, 675
FatI CATG 1 cut(s) 283
FauI CCCGC 2 cut(s) 269, 941
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 6 cut(s) 244, 247, 250, 360, 398, 401
Fsp4HI GCNGC 6 cut(s) 244, 247, 250, 360, 398, 401
GlaI GCGC 1 cut(s) 1157
GluI GCNGC 6 cut(s) 244, 247, 250, 360, 398, 401
HaeIII GGCC 3 cut(s) 34, 462, 498
HapII CCGG 3 cut(s) 339, 463, 499
HhaI GCGC 1 cut(s) 1158
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 1 cut(s) 1156
HinP1I GCGC 1 cut(s) 1156
HinfI GANTC 3 cut(s) 66, 277, 452
HpaII CCGG 3 cut(s) 339, 463, 499
HphI GGTGA 3 cut(s) 61, 458, 887
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 3 cut(s) 15, 65, 89
Hpy188III TCNNGA 4 cut(s) 22, 122, 148, 635
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 3 cut(s) 10, 145, 437
HpyCH4III ACNGT 4 cut(s) 181, 268, 698, 914
HpyCH4IV ACGT 3 cut(s) 418, 481, 676
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 249, 356, 409
HpySE526I ACGT 3 cut(s) 418, 481, 676
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 1 cut(s) 1156
Kzo9I GATC 2 cut(s) 60, 364
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 3 cut(s) 346, 409, 412
MaeII ACGT 3 cut(s) 418, 481, 676
MaeIII GTNAC 6 cut(s) 205, 692, 779, 806, 833, 860
MalI GATC 2 cut(s) 62, 366
MboI GATC 2 cut(s) 60, 364
MboII GAAGA 1 cut(s) 504
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 3 cut(s) 45, 970, 994
MluCI AATT 7 cut(s) 141, 168, 186, 195, 385, 502, 529
MlyI GAGTC 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 3 cut(s) 171, 228, 438
MspI CCGG 3 cut(s) 339, 463, 499
MspR9I CCNGG 4 cut(s) 339, 340, 464, 1133
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 1133
MwoI GCNNNNNNNGC 4 cut(s) 40, 249, 356, 409
NciI CCSGG 3 cut(s) 339, 340, 464
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 60, 364
NlaIII CATG 1 cut(s) 287
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 66, 452
PkrI GCNGC 6 cut(s) 245, 248, 251, 361, 399, 402
PleI GAGTC 1 cut(s) 271
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 419
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 1131
PspCI CACGTG 1 cut(s) 419
PspEI GGTNACC 1 cut(s) 692
PspGI CCWGG 1 cut(s) 1131
PspPI GGNCC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 1127
RsaNI GTAC 1 cut(s) 1126
SaqAI TTAA 3 cut(s) 171, 228, 438
SatI GCNGC 6 cut(s) 244, 247, 250, 360, 398, 401
Sau3AI GATC 2 cut(s) 60, 364
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 4 cut(s) 339, 340, 464, 1133
SduI GDGCHC 3 cut(s) 45, 970, 994
SfcI CTRYAG 1 cut(s) 622
SmaI CCCGGG 1 cut(s) 340
SmlI CTYRAG 2 cut(s) 555, 591
SmoI CTYRAG 2 cut(s) 555, 591
Sse9I AATT 7 cut(s) 141, 168, 186, 195, 385, 502, 529
SsiI CCGC 7 cut(s) 244, 247, 250, 262, 362, 948, 1011
StyD4I CCNGG 4 cut(s) 337, 338, 462, 1131
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 4 cut(s) 181, 268, 698, 914
TaiI ACGT 3 cut(s) 421, 484, 679
TaqI TCGA 1 cut(s) 21
TasI AATT 7 cut(s) 141, 168, 186, 195, 385, 502, 529
TauI GCSGC 3 cut(s) 246, 249, 252
TfiI GAWTC 2 cut(s) 66, 452
Tru1I TTAA 3 cut(s) 171, 228, 438
Tru9I TTAA 3 cut(s) 171, 228, 438
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 3 cut(s) 359, 397, 400
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 5 cut(s) 456, 726, 747, 771, 1107
TspGWI ACGGA 1 cut(s) 1159
TspMI CCCGGG 1 cut(s) 338
TspRI CASTG 1 cut(s) 271
XmaI CCCGGG 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.