Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

47847199 .. 47851132

Gene Structure 3934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG282500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTTCAATTACACTATCAACTAAGGAGTTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGATTCATATGGTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACGGCAACTATCAAGGTGGATATGGCAACTATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGCTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTGGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCCGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCTGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCCAGTGGGAATGATAGAGGTGCCAGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTCCTGGTGGGTATGACAGAGGTACTGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCGAACCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

312

Amino Acids

32.5

Weight (kDa)

9.76

Isoelectric Point (pI)

17.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	6 cut(s)	530, 572, 632, 731, 752, 773
AciI	CCGC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	3 cut(s)	75, 817, 838
AfiI	CCNNNNNNNGG	3 cut(s)	416, 455, 494
AgsI	TTSAA	1 cut(s)	111
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	796, 930
AluBI	AGCT	4 cut(s)	27, 161, 224, 387
AluI	AGCT	4 cut(s)	27, 161, 224, 387
AoxI	GGCC	1 cut(s)	446
AspS9I	GGNCC	4 cut(s)	230, 447, 485, 794
AvaII	GGWCC	3 cut(s)	230, 485, 794
BanI	GGYRCC	6 cut(s)	530, 572, 632, 731, 752, 773
BauI	CACGAG	1 cut(s)	225
BccI	CCATC	3 cut(s)	29, 172, 895
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	798, 932
BciVI	GTATCC	2 cut(s)	305, 417
BfaI	CTAG	2 cut(s)	173, 915
BfuI	GTATCC	2 cut(s)	305, 417
Bme1390I	CCNGG	2 cut(s)	798, 932
Bme18I	GGWCC	3 cut(s)	230, 485, 794
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	4 cut(s)	230, 447, 485, 794
BmiI	GGNNCC	7 cut(s)	54, 532, 574, 634, 733, 754, 775
BmrFI	CCNGG	2 cut(s)	798, 932
BmsI	GCATC	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 455, 494
Bse118I	RCCGGY	4 cut(s)	533, 575, 635, 776
Bse1I	ACTGG	4 cut(s)	735, 756, 823, 844
BseBI	CCWGG	2 cut(s)	798, 932
BseGI	GGATG	1 cut(s)	906
BseLI	CCNNNNNNNGG	3 cut(s)	416, 455, 494
BseNI	ACTGG	4 cut(s)	735, 756, 823, 844
BseRI	GAGGAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	448
BshNI	GGYRCC	6 cut(s)	530, 572, 632, 731, 752, 773
BsiSI	CCGG	4 cut(s)	534, 576, 636, 777
BslFI	GGGAC	2 cut(s)	288, 909
BslI	CCNNNNNNNGG	3 cut(s)	416, 455, 494
BsmFI	GGGAC	2 cut(s)	288, 909
BsnI	GGCC	1 cut(s)	448
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	448
BspLI	GGNNCC	7 cut(s)	54, 532, 574, 634, 733, 754, 775
BspT107I	GGYRCC	6 cut(s)	530, 572, 632, 731, 752, 773
BsrFI	RCCGGY	4 cut(s)	533, 575, 635, 776
BsrI	ACTGG	4 cut(s)	735, 756, 823, 844
BssAI	RCCGGY	4 cut(s)	533, 575, 635, 776
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	798, 932
Bst6I	CTCTTC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 932
BstNI	CCWGG	2 cut(s)	798, 932
BstSCI	CCNGG	2 cut(s)	796, 930
BsuI	GTATCC	2 cut(s)	305, 417
BsuRI	GGCC	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	742, 763
Cfr10I	RCCGGY	4 cut(s)	533, 575, 635, 776
Cfr13I	GGNCC	4 cut(s)	230, 447, 485, 794
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	3 cut(s)	74, 816, 837
CviAII	CATG	1 cut(s)	95
CviQI	GTAC	3 cut(s)	74, 816, 837
DdeI	CTNAG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	155
Eco47I	GGWCC	3 cut(s)	230, 485, 794
Eco57I	CTGAAG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	485, 794
EcoRII	CCWGG	2 cut(s)	796, 930
EcoRV	GATATC	1 cut(s)	155
FaeI	CATG	1 cut(s)	98
FaqI	GGGAC	2 cut(s)	288, 909
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	259
FokI	GGATG	1 cut(s)	913
FspBI	CTAG	2 cut(s)	173, 915
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	4 cut(s)	534, 576, 636, 777
HgaI	GACGC	1 cut(s)	918
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	2 cut(s)	88, 254
HpaII	CCGG	4 cut(s)	534, 576, 636, 777
Hpy166II	GTNNAC	2 cut(s)	431, 908
Hpy188III	TCNNGA	3 cut(s)	11, 392, 483
Hpy8I	GTNNAC	2 cut(s)	431, 908
HpyAV	CCTTC	1 cut(s)	498
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 932
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	173, 915
MaeII	ACGT	1 cut(s)	277
MboII	GAAGA	2 cut(s)	263, 432
MluCI	AATT	2 cut(s)	111, 196
MlyI	GAGTC	1 cut(s)	82
MseI	TTAA	1 cut(s)	134
MspI	CCGG	4 cut(s)	534, 576, 636, 777
MspR9I	CCNGG	2 cut(s)	798, 932
MvaI	CCWGG	2 cut(s)	798, 932
MwoI	GCNNNNNNNGC	2 cut(s)	33, 932
NdeI	CATATG	1 cut(s)	259
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	7 cut(s)	54, 532, 574, 634, 733, 754, 775
PfeI	GAWTC	1 cut(s)	254
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	2 cut(s)	485, 794
Psp5II	RGGWCCY	2 cut(s)	485, 794
Psp6I	CCWGG	2 cut(s)	796, 930
PspGI	CCWGG	2 cut(s)	796, 930
PspN4I	GGNNCC	7 cut(s)	54, 532, 574, 634, 733, 754, 775
PspPI	GGNCC	4 cut(s)	230, 447, 485, 794
PspPPI	RGGWCCY	2 cut(s)	485, 794
RsaI	GTAC	3 cut(s)	75, 817, 838
RsaNI	GTAC	3 cut(s)	74, 816, 837
SaqAI	TTAA	1 cut(s)	134
Sau96I	GGNCC	4 cut(s)	230, 447, 485, 794
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	798, 932
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	3 cut(s)	230, 485, 794
Sse9I	AATT	2 cut(s)	111, 196
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	2 cut(s)	173, 915
StyD4I	CCNGG	2 cut(s)	796, 930
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	111, 196
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	2 cut(s)	742, 763
TspGWI	ACGGA	1 cut(s)	913
TspRI	CASTG	2 cut(s)	742, 763
VpaK11BI	GGWCC	3 cut(s)	230, 485, 794
XspI	CTAG	2 cut(s)	173, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.