Rroxscaffold_7G00183640

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003504
Physical Location & Seq
Forward (+)
22715305 .. 22718808
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183640.1

Sequence Viewer

Length: 1176 bp
ATGGAAAGCTACCGGAGAGTCGAGAAGCCGAAGCCGGAGCTCCCAATCAGCGAGAACGAGATCCGAATCACCACCCAGGGCGCCATCAGAAACTACATCAGCTATGCCACCACTCAGCTCCAGGATAAACAAGTCAACGAAATTGTCTTGAAAGCAATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGGGTTCCAATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTTCAATTACTCTATCAACTAAGGAGTTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGATTCATATGGTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACAGCAACTATCAAGGTGGATATGGCAACTATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGCTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTAGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTGCCGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCTGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCTGCTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCCAGTGGGAATGATAGAGGTGCTGGTGGCTATGAAAGAGGTCCTGGTGGGTATGACAGAGGTACTGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCGAACCAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

391

Amino Acids

41.43

Weight (kDa)

9.76

Isoelectric Point (pI)

22.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 82 9.7e-16 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 80, 767, 809, 830, 989
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 291, 1054, 1075
AfiI CCNNNNNNNGG 3 cut(s) 632, 671, 710
AgsI TTSAA 2 cut(s) 151, 327
AjiI CACGTC 1 cut(s) 494
AjnI CCWGG 4 cut(s) 75, 120, 1033, 1167
AluBI AGCT 8 cut(s) 9, 40, 102, 118, 243, 377, 440, 603
AluI AGCT 8 cut(s) 9, 40, 102, 118, 243, 377, 440, 603
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 1 cut(s) 953
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 4 cut(s) 446, 663, 701, 1031
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 3 cut(s) 446, 701, 1031
BanI GGYRCC 5 cut(s) 80, 767, 809, 830, 989
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 940
BccI CCATC 4 cut(s) 92, 245, 388, 1132
BciT130I CCWGG 4 cut(s) 77, 122, 1035, 1169
BciVI GTATCC 2 cut(s) 521, 633
BfaI CTAG 2 cut(s) 389, 1152
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 2 cut(s) 521, 633
BisI GCNGC 1 cut(s) 954
BlsI GCNGC 1 cut(s) 955
Bme1390I CCNGG 4 cut(s) 77, 122, 1035, 1169
Bme18I GGWCC 3 cut(s) 446, 701, 1031
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 4 cut(s) 446, 663, 701, 1031
BmiI GGNNCC 7 cut(s) 82, 213, 270, 769, 811, 832, 991
BmrFI CCNGG 4 cut(s) 77, 122, 1035, 1169
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 75, 76
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 671, 710
Bse118I RCCGGY 3 cut(s) 770, 812, 833
Bse1I ACTGG 3 cut(s) 993, 1060, 1081
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 4 cut(s) 77, 122, 1035, 1169
BseDI CCNNGG 2 cut(s) 75, 76
BseGI GGATG 1 cut(s) 1143
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 632, 671, 710
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 3 cut(s) 993, 1060, 1081
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 940
BshFI GGCC 1 cut(s) 664
BshNI GGYRCC 5 cut(s) 80, 767, 809, 830, 989
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 5 cut(s) 13, 35, 771, 813, 834
BslFI GGGAC 3 cut(s) 174, 504, 1146
BslI CCNNNNNNNGG 3 cut(s) 632, 671, 710
BsmFI GGGAC 3 cut(s) 174, 504, 1146
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 7 cut(s) 82, 213, 270, 769, 811, 832, 991
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 5 cut(s) 80, 767, 809, 830, 989
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 3 cut(s) 770, 812, 833
BsrI ACTGG 3 cut(s) 993, 1060, 1081
BssAI RCCGGY 3 cut(s) 770, 812, 833
BssECI CCNNGG 2 cut(s) 75, 76
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 4 cut(s) 77, 122, 1035, 1169
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 200, 631
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 114, 342
BstF5I GGATG 1 cut(s) 1143
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 249, 1169
BstNI CCWGG 4 cut(s) 77, 122, 1035, 1169
BstSCI CCNGG 4 cut(s) 75, 120, 1033, 1167
BstV1I GCAGC 1 cut(s) 940
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuI GTATCC 2 cut(s) 521, 633
BsuRI GGCC 1 cut(s) 664
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 1143
BtsIMutI CAGTG 2 cut(s) 186, 1000
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 3 cut(s) 770, 812, 833
Cfr13I GGNCC 4 cut(s) 446, 663, 701, 1031
CseI GACGC 1 cut(s) 1155
Csp6I GTAC 3 cut(s) 290, 1053, 1074
CviAII CATG 1 cut(s) 311
CviQI GTAC 3 cut(s) 290, 1053, 1074
DdeI CTNAG 2 cut(s) 114, 342
DinI GGCGCC 1 cut(s) 82
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 200, 631
EarI CTCTTC 2 cut(s) 200, 631
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 3 cut(s) 446, 701, 1031
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 2 cut(s) 701, 1031
EcoRII CCWGG 4 cut(s) 75, 120, 1033, 1167
EcoRV GATATC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
FaeI CATG 1 cut(s) 314
FaqI GGGAC 3 cut(s) 174, 504, 1146
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 954
FokI GGATG 1 cut(s) 1150
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 954
FspBI CTAG 2 cut(s) 389, 1152
GlaI GCGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 954
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 664
HapII CCGG 5 cut(s) 13, 35, 771, 813, 834
HgaI GACGC 1 cut(s) 1155
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 18, 66, 304, 470
HpaII CCGG 5 cut(s) 13, 35, 771, 813, 834
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 3 cut(s) 136, 647, 1145
Hpy188I TCNGA 2 cut(s) 65, 89
Hpy188III TCNNGA 5 cut(s) 22, 148, 227, 608, 699
Hpy8I GTNNAC 3 cut(s) 136, 647, 1145
HpyAV CCTTC 1 cut(s) 714
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 1169
HpyF3I CTNAG 2 cut(s) 114, 342
HpySE526I ACGT 1 cut(s) 493
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 81
KasI GGCGCC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 4 cut(s) 37, 45, 123, 382
Lsp1109I GCAGC 1 cut(s) 940
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 389, 1152
MaeII ACGT 1 cut(s) 493
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 217, 479, 648
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 141, 327, 412
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 27, 298
MseI TTAA 1 cut(s) 350
MspI CCGG 5 cut(s) 13, 35, 771, 813, 834
MspR9I CCNGG 4 cut(s) 77, 122, 1035, 1169
MvaI CCWGG 4 cut(s) 77, 122, 1035, 1169
MwoI GCNNNNNNNGC 2 cut(s) 249, 1169
NarI GGCGCC 1 cut(s) 81
NdeI CATATG 1 cut(s) 475
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 7 cut(s) 82, 213, 270, 769, 811, 832, 991
PasI CCCWGGG 1 cut(s) 76
PfeI GAWTC 2 cut(s) 66, 470
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 1 cut(s) 955
PleI GAGTC 2 cut(s) 26, 298
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 2 cut(s) 26, 298
PpuMI RGGWCCY 2 cut(s) 701, 1031
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 2 cut(s) 701, 1031
Psp6I CCWGG 4 cut(s) 75, 120, 1033, 1167
PspGI CCWGG 4 cut(s) 75, 120, 1033, 1167
PspN4I GGNNCC 7 cut(s) 82, 213, 270, 769, 811, 832, 991
PspPI GGNCC 4 cut(s) 446, 663, 701, 1031
PspPPI RGGWCCY 2 cut(s) 701, 1031
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 3 cut(s) 291, 1054, 1075
RsaNI GTAC 3 cut(s) 290, 1053, 1074
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 1 cut(s) 954
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 4 cut(s) 446, 663, 701, 1031
SchI GAGTC 2 cut(s) 27, 298
ScrFI CCNGG 4 cut(s) 77, 122, 1035, 1169
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 82
SinI GGWCC 3 cut(s) 446, 701, 1031
Sse9I AATT 3 cut(s) 141, 327, 412
SsiI CCGC 1 cut(s) 365
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 389, 1152
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 4 cut(s) 75, 120, 1033, 1167
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 21, 481
TasI AATT 3 cut(s) 141, 327, 412
TfiI GAWTC 2 cut(s) 66, 470
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 186, 1000
TseI GCWGC 1 cut(s) 953
TspGWI ACGGA 1 cut(s) 1150
TspRI CASTG 2 cut(s) 186, 1000
VpaK11BI GGWCC 3 cut(s) 446, 701, 1031
XspI CTAG 2 cut(s) 389, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.