Rw6G024290

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003504
Physical Location & Seq
Reverse (-)
47224971 .. 47228627
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024290.1

Sequence Viewer

Length: 975 bp
ATGGAAAGCTACCGGAGAGTCGAGAAGCCGAAGCCGGAGCTCCCAATCAGCGAGAACGAGATCCGAATCACCACCCAGGGCGCCATCAGAAACTACATCAGCTATGCCACCACTCAGCTCCAGGATAAACAAGTCAACGAAATTGTCTTGAAGGCAATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGGGTTCCAATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTTCAATTACACTATCAACTAAGGAGTTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCAGCGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGATTCATATGGTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACGGCAACTATCAAGGTGGATATGGCAACTATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGTTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTGGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTGCTGGTGGCTATGAAAGAGGTGCTGGTGGCTATGAAAGAGGTCCTGGTGGGTATGACAGAGGTACTGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCGAACCAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

324

Amino Acids

34.58

Weight (kDa)

9.89

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 82 7.2e-16 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 80, 746
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 291, 853, 874
AfiI CCNNNNNNNGG 3 cut(s) 632, 671, 710
AgsI TTSAA 2 cut(s) 151, 327
AjiI CACGTC 1 cut(s) 494
AjnI CCWGG 4 cut(s) 75, 120, 832, 966
AluBI AGCT 7 cut(s) 9, 40, 102, 118, 243, 377, 440
AluI AGCT 7 cut(s) 9, 40, 102, 118, 243, 377, 440
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 662
AspLEI GCGC 2 cut(s) 83, 409
AspS9I GGNCC 4 cut(s) 446, 663, 701, 830
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 3 cut(s) 446, 701, 830
BanI GGYRCC 2 cut(s) 80, 746
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 4 cut(s) 92, 245, 388, 931
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 4 cut(s) 77, 122, 834, 968
BciVI GTATCC 2 cut(s) 521, 633
BfaI CTAG 2 cut(s) 389, 951
BfoI RGCGCY 2 cut(s) 84, 410
BfuI GTATCC 2 cut(s) 521, 633
Bme1390I CCNGG 4 cut(s) 77, 122, 834, 968
Bme18I GGWCC 3 cut(s) 446, 701, 830
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 4 cut(s) 446, 663, 701, 830
BmiI GGNNCC 4 cut(s) 82, 213, 270, 748
BmrFI CCNGG 4 cut(s) 77, 122, 834, 968
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 75, 76
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 671, 710
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 2 cut(s) 859, 880
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 4 cut(s) 77, 122, 834, 968
BseDI CCNNGG 2 cut(s) 75, 76
BseGI GGATG 1 cut(s) 942
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 632, 671, 710
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 859, 880
BseRI GAGGAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 664
BshNI GGYRCC 2 cut(s) 80, 746
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 3 cut(s) 13, 35, 750
BslFI GGGAC 3 cut(s) 174, 504, 945
BslI CCNNNNNNNGG 3 cut(s) 632, 671, 710
BsmFI GGGAC 3 cut(s) 174, 504, 945
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 4 cut(s) 82, 213, 270, 748
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 2 cut(s) 80, 746
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 2 cut(s) 859, 880
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 2 cut(s) 75, 76
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 4 cut(s) 77, 122, 834, 968
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 200, 631
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 114, 342
BstF5I GGATG 1 cut(s) 942
BstH2I RGCGCY 2 cut(s) 84, 410
BstHHI GCGC 2 cut(s) 83, 409
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 249, 968
BstNI CCWGG 4 cut(s) 77, 122, 834, 968
BstSCI CCNGG 4 cut(s) 75, 120, 832, 966
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuI GTATCC 2 cut(s) 521, 633
BsuRI GGCC 1 cut(s) 664
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 942
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 2 cut(s) 83, 409
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 4 cut(s) 446, 663, 701, 830
CseI GACGC 1 cut(s) 954
Csp6I GTAC 3 cut(s) 290, 852, 873
CviAII CATG 1 cut(s) 311
CviQI GTAC 3 cut(s) 290, 852, 873
DdeI CTNAG 2 cut(s) 114, 342
DinI GGCGCC 1 cut(s) 82
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 200, 631
EarI CTCTTC 2 cut(s) 200, 631
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 3 cut(s) 446, 701, 830
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 2 cut(s) 701, 830
EcoRII CCWGG 4 cut(s) 75, 120, 832, 966
EcoRV GATATC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
FaeI CATG 1 cut(s) 314
FaqI GGGAC 3 cut(s) 174, 504, 945
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 475
FokI GGATG 1 cut(s) 949
FriOI GRGCYC 1 cut(s) 42
FspBI CTAG 2 cut(s) 389, 951
GlaI GCGC 2 cut(s) 82, 408
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 2 cut(s) 84, 410
HaeIII GGCC 1 cut(s) 664
HapII CCGG 3 cut(s) 13, 35, 750
HgaI GACGC 1 cut(s) 954
HhaI GCGC 2 cut(s) 83, 409
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 2 cut(s) 81, 407
HinP1I GCGC 2 cut(s) 81, 407
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 18, 66, 304, 470
HpaII CCGG 3 cut(s) 13, 35, 750
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 3 cut(s) 136, 647, 944
Hpy188I TCNGA 2 cut(s) 65, 89
Hpy188III TCNNGA 5 cut(s) 22, 148, 227, 608, 699
Hpy8I GTNNAC 3 cut(s) 136, 647, 944
HpyAV CCTTC 2 cut(s) 145, 714
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 968
HpyF3I CTNAG 2 cut(s) 114, 342
HpySE526I ACGT 1 cut(s) 493
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 2 cut(s) 81, 407
KasI GGCGCC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 4 cut(s) 37, 45, 123, 382
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 389, 951
MaeII ACGT 1 cut(s) 493
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 217, 479, 648
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 141, 327, 412
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 27, 298
MseI TTAA 1 cut(s) 350
MspI CCGG 3 cut(s) 13, 35, 750
MspR9I CCNGG 4 cut(s) 77, 122, 834, 968
MvaI CCWGG 4 cut(s) 77, 122, 834, 968
MwoI GCNNNNNNNGC 2 cut(s) 249, 968
NarI GGCGCC 1 cut(s) 81
NdeI CATATG 1 cut(s) 475
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 4 cut(s) 82, 213, 270, 748
PasI CCCWGGG 1 cut(s) 76
PfeI GAWTC 2 cut(s) 66, 470
PfoI TCCNGGA 1 cut(s) 120
PleI GAGTC 2 cut(s) 26, 298
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 2 cut(s) 26, 298
PpuMI RGGWCCY 2 cut(s) 701, 830
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 2 cut(s) 701, 830
Psp6I CCWGG 4 cut(s) 75, 120, 832, 966
PspGI CCWGG 4 cut(s) 75, 120, 832, 966
PspN4I GGNNCC 4 cut(s) 82, 213, 270, 748
PspPI GGNCC 4 cut(s) 446, 663, 701, 830
PspPPI RGGWCCY 2 cut(s) 701, 830
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 3 cut(s) 291, 853, 874
RsaNI GTAC 3 cut(s) 290, 852, 873
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 4 cut(s) 446, 663, 701, 830
SchI GAGTC 2 cut(s) 27, 298
ScrFI CCNGG 4 cut(s) 77, 122, 834, 968
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 82
SinI GGWCC 3 cut(s) 446, 701, 830
Sse9I AATT 3 cut(s) 141, 327, 412
SsiI CCGC 1 cut(s) 365
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 389, 951
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 4 cut(s) 75, 120, 832, 966
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 21, 481
TasI AATT 3 cut(s) 141, 327, 412
TfiI GAWTC 2 cut(s) 66, 470
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 949
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 3 cut(s) 446, 701, 830
XspI CTAG 2 cut(s) 389, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.