Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

17743379 .. 17747118

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14350.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGCGCGGAGCACCACCCCTTATCAACCATGCAGTGATACGTGGAGGCACACGAAGAGTTGGAACATGTACGCTACTAAACCCTGGCTGTCGATTTGTGAAATATGGAGCGAAATCGAATTGGGCTTGGGCTTTTGAAAACCAAAATTTCGCCATTTTTTTAACCGCTTCCCGTTCATACTTTGTCTCTCTCCTCTCTTCAGTGTTCTCTGACTCTCTCGCTCCTCCGCTAGGGTTTTATAGGGTTTTCTGTTTCTCCCAAATCCAAAAGTTCCGAAACGCCATGGAAAAGTTTCAGAGAGTCGAGAAGCCGAGGCCCGAATTGCCCATCAACGAGAACGAGATCCGCATCACCACCCAAGGCGCTATCAGAAACTACATCAGCTATGCCACCACTGTGCTGCAGGATAAGCACGGAAAAGAAATCGTCTTGAAGGCAATGGGACAGGCAATTAACAAGACAGTTGCAATTGCTGAAATTATAAAGAATAGAATTCCCTTGTTGCATCAAGAAACTGCCATCAGCTCTGTAAGCATAACTGATGTGTTTGAACCGATGGAAGAAGGTCTTCTCCCTGTGGAAACGACTCGTCATGTCTCAATGATTTCAATCACATTATCAACTAAGGAGCTAAACACAAATTCTCCTGGGTATCAAGCCCCATATGTTGCGGATCAATCAAAGCCACAGCCGAAGTACCAACAGCAGCAGCAACCAAAACAAACACGTGTTTCTTACAATGCTGTTAATGAAGGTGATGATTCATATGGCCGAGGACGGGGACGTGGTAGAGGAAGAGGCCGGAATTGGGGCAGGGGTGGAGGAGGGTATGGCAATTATCAAGGCGGATATGGAAATCATCAAGGTCGATCTGGGAACTATCAAGGTGGTTATAGAAACTATCAAGATAATGGTGGATATTCAAATCGGGGACAAGGTGGTGGACGTGGTAGGGGTTGGGGTAACCGTGGTTCTGGTGGTGGGTATGAAAGAGGTGCTGGTAGATATGAAAGAGGTTCTGGCGGTGGATATGAAAGAGGTTCTGGCGGTGGGTATGAAAGAGGTTCTGGCCGTGGGTATGAAAGAGGCGGTGCTGGCGGTGGGTATGAAAGAGGTGCTGGTGGTGGATATGAAAGAGGTGCTGGTGGTGGATATGAAAGAGGTTCTGGCGGTGGGTATGAAAGAGGTTCCGGCGGTGGGTATGAAAGAGGTTCTGGCGGTGGGTATGAAAGAGGCGGTGCTGGCAGAGGTTATGAAAGAGGCGGTGCTGGTGGAGGTTATGAAAGAGGTGGTGCTGGTGGAGGTTATGAAAGAGGCGGTGCTGGTGGAGGTTATGAAAGAGGTGCTGGTGGCTATGAGAGAGGCGGTGCTGGTGGATATGAACGAGGTGGCAGAGGTGGAGGGGGCAGAGGGTACAACCGAGCAAGAGGACGGACGGGCGAGCACACAAGAGGTGATGGAACTGGAAACCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

493

Amino Acids

52.23

Weight (kDa)

9.94

Isoelectric Point (pI)

19.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AccII	CGCG	1 cut(s)	6
AclWI	GGATC	2 cut(s)	337, 681
AcoI	YGGCCR	2 cut(s)	769, 1069
AcsI	RAATTY	3 cut(s)	145, 492, 640
AcuI	CTGAAG	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	728
AfaI	GTAC	3 cut(s)	70, 698, 1415
AfiI	CCNNNNNNNGG	4 cut(s)	230, 778, 808, 1197
AflIII	ACRYGT	3 cut(s)	65, 725, 727
AgsI	TTSAA	5 cut(s)	137, 433, 551, 609, 924
AjiI	CACGTC	2 cut(s)	785, 947
AjnI	CCWGG	2 cut(s)	82, 646
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	3 cut(s)	384, 525, 631
AluI	AGCT	3 cut(s)	384, 525, 631
Alw21I	GWGCWC	2 cut(s)	13, 1446
Alw26I	GTCTC	2 cut(s)	190, 601
AlwI	GGATC	2 cut(s)	337, 681
AoxI	GGCC	4 cut(s)	314, 769, 799, 1069
ApeKI	GCWGC	3 cut(s)	400, 706, 709
ApoI	RAATTY	3 cut(s)	145, 492, 640
Asp700I	GAANNNNTTC	2 cut(s)	291, 567
AspLEI	GCGC	2 cut(s)	6, 365
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	343, 767, 1466
BbrPI	CACGTG	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	2 cut(s)	13, 1446
BbvI	GCAGC	3 cut(s)	387, 718, 721
BccI	CCATC	4 cut(s)	335, 527, 550, 1451
BceAI	ACGGC	1 cut(s)	1056
BciT130I	CCWGG	2 cut(s)	84, 648
BcoDI	GTCTC	2 cut(s)	190, 601
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	366
BisI	GCNGC	3 cut(s)	401, 707, 710
BlsI	GCNGC	3 cut(s)	402, 708, 711
Bme1390I	CCNGG	2 cut(s)	84, 648
BmgBI	CACGTC	2 cut(s)	785, 947
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	1189
BmrFI	CCNGG	2 cut(s)	84, 648
BmsI	GCATC	2 cut(s)	357, 514
BpiI	GAAGAC	1 cut(s)	560
BsaAI	YACGTR	2 cut(s)	41, 728
BsaBI	GATNNNNATC	2 cut(s)	347, 608
BsaJI	CCNNGG	8 cut(s)	82, 282, 311, 358, 647, 772, 967, 1072
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 778, 808, 1197
Bse1I	ACTGG	1 cut(s)	1468
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	2 cut(s)	347, 608
BseBI	CCWGG	2 cut(s)	84, 648
BseDI	CCNNGG	8 cut(s)	82, 282, 311, 358, 647, 772, 967, 1072
BseJI	GATNNNNATC	2 cut(s)	347, 608
BseLI	CCNNNNNNNGG	4 cut(s)	230, 778, 808, 1197
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	1468
BseRI	GAGGAG	3 cut(s)	182, 213, 837
BseXI	GCAGC	3 cut(s)	387, 718, 721
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	4 cut(s)	316, 771, 801, 1071
BsiHKAI	GWGCWC	2 cut(s)	13, 1446
BsiSI	CCGG	2 cut(s)	802, 1191
BslFI	GGGAC	3 cut(s)	456, 795, 945
BslI	CCNNNNNNNGG	4 cut(s)	230, 778, 808, 1197
BsmAI	GTCTC	2 cut(s)	190, 601
BsmFI	GGGAC	3 cut(s)	456, 795, 945
BsnI	GGCC	4 cut(s)	316, 771, 801, 1071
Bsp1286I	GDGCHC	2 cut(s)	13, 1446
Bsp143I	GATC	3 cut(s)	342, 673, 869
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	4 cut(s)	316, 771, 801, 1071
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	1189
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	2 cut(s)	337, 681
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	1468
BssECI	CCNNGG	8 cut(s)	82, 282, 311, 358, 647, 772, 967, 1072
BssMI	GATC	3 cut(s)	342, 673, 869
BssT1I	CCWWGG	2 cut(s)	282, 358
Bst2UI	CCWGG	2 cut(s)	84, 648
Bst4CI	ACNGT	3 cut(s)	397, 463, 968
Bst6I	CTCTTC	3 cut(s)	49, 202, 790
BstBAI	YACGTR	2 cut(s)	41, 728
BstC8I	GCNNGC	3 cut(s)	1096, 1243, 1442
BstDEI	CTNAG	1 cut(s)	624
BstDSI	CCRYGG	3 cut(s)	282, 967, 1072
BstEII	GGTNACC	1 cut(s)	962
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	6, 365
BstKTI	GATC	3 cut(s)	345, 676, 872
BstMAI	GTCTC	2 cut(s)	190, 601
BstMBI	GATC	3 cut(s)	342, 673, 869
BstMWI	GCNNNNNNNGC	5 cut(s)	322, 409, 531, 1095, 1242
BstNI	CCWGG	2 cut(s)	84, 648
BstNSI	RCATGY	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	962
BstSCI	CCNGG	2 cut(s)	82, 646
BstSFI	CTRYAG	1 cut(s)	401
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	387, 718, 721
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	316, 771, 801, 1071
BtgI	CCRYGG	3 cut(s)	282, 967, 1072
BtrI	CACGTC	2 cut(s)	785, 947
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 207, 393
Cac8I	GCNNGC	3 cut(s)	1096, 1243, 1442
CfoI	GCGC	2 cut(s)	6, 365
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	69, 697, 1414
CviAII	CATG	4 cut(s)	29, 66, 283, 593
CviQI	GTAC	3 cut(s)	69, 697, 1414
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	3 cut(s)	344, 675, 871
DpnII	GATC	3 cut(s)	342, 673, 869
EaeI	YGGCCR	2 cut(s)	769, 1069
Eam1104I	CTCTTC	3 cut(s)	49, 202, 790
EarI	CTCTTC	3 cut(s)	49, 202, 790
EciI	GGCGGA	1 cut(s)	861
Eco130I	CCWWGG	2 cut(s)	282, 358
Eco57I	CTGAAG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	728
Eco91I	GGTNACC	1 cut(s)	962
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoO65I	GGTNACC	1 cut(s)	962
EcoRI	GAATTC	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	82, 646
EcoT14I	CCWWGG	2 cut(s)	282, 358
ErhI	CCWWGG	2 cut(s)	282, 358
FaeI	CATG	4 cut(s)	32, 69, 286, 596
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	3 cut(s)	456, 795, 945
FatI	CATG	4 cut(s)	28, 65, 282, 592
FauNDI	CATATG	2 cut(s)	664, 766
Fnu4HI	GCNGC	3 cut(s)	401, 707, 710
Fsp4HI	GCNGC	3 cut(s)	401, 707, 710
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	5, 364
GluI	GCNGC	3 cut(s)	401, 707, 710
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	316, 771, 801, 1071
HapII	CCGG	2 cut(s)	802, 1191
HhaI	GCGC	2 cut(s)	6, 365
Hin1II	CATG	4 cut(s)	32, 69, 286, 596
Hin6I	GCGC	2 cut(s)	4, 363
HinP1I	GCGC	2 cut(s)	4, 363
HinfI	GANTC	4 cut(s)	212, 300, 586, 761
HpaII	CCGG	2 cut(s)	802, 1191
HphI	GGTGA	3 cut(s)	343, 767, 1466
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	4 cut(s)	211, 275, 297, 371
Hpy188III	TCNNGA	4 cut(s)	304, 430, 509, 905
Hpy8I	GTNNAC	1 cut(s)	944
HpyAV	CCTTC	3 cut(s)	427, 557, 746
HpyCH4III	ACNGT	3 cut(s)	397, 463, 968
HpyCH4IV	ACGT	4 cut(s)	40, 727, 784, 946
HpyCH4V	TGCA	4 cut(s)	32, 403, 467, 505
HpyF10VI	GCNNNNNNNGC	5 cut(s)	322, 409, 531, 1095, 1242
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	4 cut(s)	40, 727, 784, 946
Hsp92II	CATG	4 cut(s)	32, 69, 286, 596
HspAI	GCGC	2 cut(s)	4, 363
Kzo9I	GATC	3 cut(s)	342, 673, 869
LmnI	GCTCC	4 cut(s)	8, 107, 226, 628
Lsp1109I	GCAGC	3 cut(s)	387, 718, 721
LweI	GCATC	2 cut(s)	357, 514
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	4 cut(s)	40, 727, 784, 946
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	3 cut(s)	344, 675, 871
MboI	GATC	3 cut(s)	342, 673, 869
MboII	GAAGA	5 cut(s)	66, 189, 560, 572, 807
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	13, 1446
MlyI	GAGTC	3 cut(s)	206, 309, 580
MmeI	TCCRAC	1 cut(s)	40
MroXI	GAANNNNTTC	2 cut(s)	291, 567
MseI	TTAA	3 cut(s)	161, 453, 747
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	2 cut(s)	802, 1191
MspR9I	CCNGG	2 cut(s)	84, 648
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	84, 648
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	322, 409, 531, 1095, 1242
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	2 cut(s)	664, 766
NdeII	GATC	3 cut(s)	342, 673, 869
NlaIII	CATG	4 cut(s)	32, 69, 286, 596
NlaIV	GGNNCC	1 cut(s)	1189
NmeAIII	GCCGAG	2 cut(s)	336, 797
NspI	RCATGY	1 cut(s)	69
OliI	CACNNNNGTG	1 cut(s)	395
PciI	ACATGT	1 cut(s)	65
PdmI	GAANNNNTTC	2 cut(s)	291, 567
PfeI	GAWTC	1 cut(s)	761
PkrI	GCNGC	3 cut(s)	402, 708, 711
PleI	GAGTC	3 cut(s)	206, 308, 580
PmaCI	CACGTG	1 cut(s)	728
PmlI	CACGTG	1 cut(s)	728
PpsI	GAGTC	3 cut(s)	206, 308, 580
Ppu21I	YACGTR	2 cut(s)	41, 728
PscI	ACATGT	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	82, 646
PspCI	CACGTG	1 cut(s)	728
PspEI	GGTNACC	1 cut(s)	962
PspGI	CCWGG	2 cut(s)	82, 646
PspN4I	GGNNCC	1 cut(s)	1189
PspPI	GGNCC	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	955, 987
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	3 cut(s)	70, 698, 1415
RsaNI	GTAC	3 cut(s)	69, 697, 1414
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	161, 453, 747
SatI	GCNGC	3 cut(s)	401, 707, 710
Sau3AI	GATC	3 cut(s)	342, 673, 869
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	206, 309, 580
ScrFI	CCNGG	2 cut(s)	84, 648
SduI	GDGCHC	2 cut(s)	13, 1446
SfaNI	GCATC	2 cut(s)	357, 514
SfcI	CTRYAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	395
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	82, 646
StyI	CCWWGG	2 cut(s)	282, 358
TaaI	ACNGT	3 cut(s)	397, 463, 968
TaiI	ACGT	4 cut(s)	43, 730, 787, 949
TaqI	TCGA	4 cut(s)	91, 116, 303, 868
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	3 cut(s)	161, 453, 747
Tru9I	TTAA	3 cut(s)	161, 453, 747
TscAI	CASTG	3 cut(s)	39, 207, 400
TseI	GCWGC	3 cut(s)	400, 706, 709
TspGWI	ACGGA	2 cut(s)	429, 1447
TspRI	CASTG	3 cut(s)	39, 207, 400
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	3 cut(s)	145, 492, 640
XceI	RCATGY	1 cut(s)	69
XmnI	GAANNNNTTC	2 cut(s)	291, 567
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.