Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

25683244 .. 25687404

Gene Structure 4161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1166400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAAAAGTTTCAGAGAGTCGAGAAGCCGAGGCCCGAACTGCCCATCAACGAGAACGAGATCCGCATCACCACCCAAGGCGCTATCAGAAACTACATCAGCTATGCCACCACTCTGCTGCAGGATAAGCACGGAAAAGAAATCGTCTTGAAGGCAATGGGACAGGCAATTAACAAGACAGTTGCAATTGCTGAAATTATAAAGAATAGAATTCCCTTGTTACATCAAGAGACTGCCATCAGCTCTGTAAGCATAACTGATGTGTTTGAACCGATGGAAGAAGGTCTTCTCCCTGTGGAAACGACTCGTCATGTCTCAATGATTTCAATCACATTATCAACTAAGGAGCTAAACACAAATTCTCCTGGGTATCAAGCCCCATATGTTGCGGATCAATCAAAGCCACAGCCAAAGTACCAACAGCAGCAGCAACCAAAACAAGCACGTGTTTCTTACAATGCTGTTAATGAAGGTGATGATTCATATGGCCGAGGACGGGGACGTGGTAGAGGAAGAGGCCGGAATTGGGGCAGGGGTGGAGGGTATGGCAATTATCAAGGCGGATATGGAAATCATCAAGGTGGATCTGGGAACTATCAAGGTGGTTATAGAAACTATCAAGATAATGGTGGATATTCCAGTCGGGGACAAGGTGGTGGACGTGGTAGGGGTTGGGGTAACCGTGGTTCTGGTGGTGGGTATGAAAGAGGTGCTGGTAGCTATGAAAGAGGTTCTGGTGGTGGATATGAAAGAGGTGTTCTGGCGGCGGGTATGAAAGAGGTTCTGGCGGTGGGTATGAAAGAGGTTCTGGCGGTGGGTATGAAAGAGGCGGTGCTGGTGGAGGGTATGAAAGAGGCGGTGCTGGTGGAGGAGGGTATGAAAGAGGTTCTGGTGGTGGGCATGAAAGAGGCGGTGCTGGTGGAGGGTATGAAAGAGGCGGTGCTGGTGGAGGAGGGTATGAAAGAGGCGGTGCTGGTGGAGGGTATGAAAGAGGCGGTGCTGGTGGAGGGTATGAAAGAGGCAGTGCTGGTCGTGGGTATGAAAGAGGCGGTGCTGGCCGTGGGTATGAAAGAGGCAGTGCTGGTCGTGGGTATGAAAGAGGCGGTGCTGGCCGTGGGTATGAAAGAGGCGATGCTGGCAGACGTTATGAAAGAGGCGGTGCTGGTGGATATGAGAGAGGCGGTGCTGGTGGATATGAACGAGGTGGCAGAGGTGGAGGGGGAAGAGGGTACAACCGAGCAAGAGGACGGACGGGTGGGCGCACAAGAGGTGATGGAACTGGAAACCAAGCATAATCTAAAGTTGGTGATATTTTTTGCTTCAGCTACAATGCATATGCCCTTTGGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

451

Amino Acids

48.64

Weight (kDa)

5.5

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	19 - 82	5.8e-15	Alba
Rpp20	PF12328	41 - 110	1.2e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AclWI	GGATC	3 cut(s)	55, 399, 592
AcoI	YGGCCR	3 cut(s)	487, 1056, 1110
AcsI	RAATTY	2 cut(s)	210, 358
AcuI	CTGAAG	1 cut(s)	1305
AcvI	CACGTG	1 cut(s)	446
AfaI	GTAC	2 cut(s)	416, 1231
AfiI	CCNNNNNNNGG	2 cut(s)	496, 526
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	151, 269, 327
AjiI	CACGTC	2 cut(s)	503, 662
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	5 cut(s)	102, 243, 349, 720, 1325
AluI	AGCT	5 cut(s)	102, 243, 349, 720, 1325
Alw26I	GTCTC	2 cut(s)	224, 319
AlwI	GGATC	3 cut(s)	55, 399, 592
AoxI	GGCC	6 cut(s)	32, 487, 517, 1056, 1110, 1345
ApeKI	GCWGC	3 cut(s)	118, 424, 427
ApoI	RAATTY	2 cut(s)	210, 358
Asp700I	GAANNNNTTC	2 cut(s)	9, 285
AspLEI	GCGC	2 cut(s)	83, 1262
AspS9I	GGNCC	2 cut(s)	33, 1346
AsuHPI	GGTGA	4 cut(s)	61, 485, 1282, 1318
BbrPI	CACGTG	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	105, 436, 439
BccI	CCATC	4 cut(s)	53, 245, 268, 1267
BceAI	ACGGC	2 cut(s)	1043, 1097
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	224, 319
BfmI	CTRYAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	4 cut(s)	119, 425, 428, 765
BlsI	GCNGC	4 cut(s)	120, 426, 429, 766
Bme1390I	CCNGG	1 cut(s)	366
BmgBI	CACGTC	2 cut(s)	503, 662
BmgT120I	GGNCC	2 cut(s)	33, 1346
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	75, 1122
BpiI	GAAGAC	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	446
BsaBI	GATNNNNATC	2 cut(s)	65, 326
BsaJI	CCNNGG	7 cut(s)	29, 76, 365, 490, 682, 1059, 1113
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 526
Bse1I	ACTGG	2 cut(s)	639, 1284
Bse3DI	GCAATG	1 cut(s)	162
Bse8I	GATNNNNATC	2 cut(s)	65, 326
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	7 cut(s)	29, 76, 365, 490, 682, 1059, 1113
BseJI	GATNNNNATC	2 cut(s)	65, 326
BseLI	CCNNNNNNNGG	2 cut(s)	496, 526
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	639, 1284
BseRI	GAGGAG	2 cut(s)	884, 965
BseXI	GCAGC	3 cut(s)	105, 436, 439
BshFI	GGCC	6 cut(s)	34, 489, 519, 1058, 1112, 1347
BsiSI	CCGG	1 cut(s)	520
BslFI	GGGAC	3 cut(s)	174, 513, 660
BslI	CCNNNNNNNGG	2 cut(s)	496, 526
BsmAI	GTCTC	2 cut(s)	224, 319
BsmFI	GGGAC	3 cut(s)	174, 513, 660
BsnI	GGCC	6 cut(s)	34, 489, 519, 1058, 1112, 1347
Bsp143I	GATC	3 cut(s)	60, 391, 584
BspANI	GGCC	6 cut(s)	34, 489, 519, 1058, 1112, 1347
BspMAI	CTGCAG	1 cut(s)	123
BspPI	GGATC	3 cut(s)	55, 399, 592
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	639, 1284
BssECI	CCNNGG	7 cut(s)	29, 76, 365, 490, 682, 1059, 1113
BssMI	GATC	3 cut(s)	60, 391, 584
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	181, 683
Bst6I	CTCTTC	2 cut(s)	508, 1218
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	1056, 1110, 1137
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	3 cut(s)	682, 1059, 1113
BstEII	GGTNACC	1 cut(s)	677
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 1262
BstKTI	GATC	3 cut(s)	63, 394, 587
BstMAI	GTCTC	2 cut(s)	224, 319
BstMBI	GATC	3 cut(s)	60, 391, 584
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 127, 249, 1055, 1109, 1136
BstNI	CCWGG	1 cut(s)	366
BstPI	GGTNACC	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	105, 436, 439
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	60, 584
BstYI	RGATCY	2 cut(s)	60, 584
BsuRI	GGCC	6 cut(s)	34, 489, 519, 1058, 1112, 1347
BtgI	CCRYGG	3 cut(s)	682, 1059, 1113
BtgZI	GCGATG	1 cut(s)	1145
BtrI	CACGTC	2 cut(s)	503, 662
BtsI	GCAGTG	2 cut(s)	1029, 1083
BtsIMutI	CAGTG	2 cut(s)	1029, 1083
Cac8I	GCNNGC	3 cut(s)	1056, 1110, 1137
CfoI	GCGC	2 cut(s)	83, 1262
Cfr13I	GGNCC	2 cut(s)	33, 1346
Csp6I	GTAC	2 cut(s)	415, 1230
CviAII	CATG	2 cut(s)	311, 901
CviQI	GTAC	2 cut(s)	415, 1230
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	62, 393, 586
DpnII	GATC	3 cut(s)	60, 391, 584
EaeI	YGGCCR	3 cut(s)	487, 1056, 1110
Eam1104I	CTCTTC	2 cut(s)	508, 1218
EarI	CTCTTC	2 cut(s)	508, 1218
EciI	GGCGGA	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	1305
Eco72I	CACGTG	1 cut(s)	446
Eco91I	GGTNACC	1 cut(s)	677
EcoO65I	GGTNACC	1 cut(s)	677
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	1335
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	314, 904
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	3 cut(s)	174, 513, 660
FatI	CATG	2 cut(s)	310, 900
FauI	CCCGC	1 cut(s)	760
FauNDI	CATATG	3 cut(s)	382, 484, 1335
Fnu4HI	GCNGC	4 cut(s)	119, 425, 428, 765
Fsp4HI	GCNGC	4 cut(s)	119, 425, 428, 765
GlaI	GCGC	2 cut(s)	82, 1261
GluI	GCNGC	4 cut(s)	119, 425, 428, 765
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	6 cut(s)	34, 489, 519, 1058, 1112, 1347
HapII	CCGG	1 cut(s)	520
HhaI	GCGC	2 cut(s)	83, 1262
Hin1II	CATG	2 cut(s)	314, 904
Hin6I	GCGC	2 cut(s)	81, 1260
HinP1I	GCGC	2 cut(s)	81, 1260
HinfI	GANTC	3 cut(s)	18, 304, 479
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	4 cut(s)	61, 485, 1282, 1318
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	2 cut(s)	15, 89
Hpy188III	TCNNGA	4 cut(s)	22, 148, 227, 620
Hpy8I	GTNNAC	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	145, 275, 464
HpyCH4III	ACNGT	2 cut(s)	181, 683
HpyCH4IV	ACGT	4 cut(s)	445, 502, 661, 1143
HpyCH4V	TGCA	3 cut(s)	121, 185, 1333
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 127, 249, 1055, 1109, 1136
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	4 cut(s)	445, 502, 661, 1143
Hsp92II	CATG	2 cut(s)	314, 904
HspAI	GCGC	2 cut(s)	81, 1260
Kzo9I	GATC	3 cut(s)	60, 391, 584
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	3 cut(s)	105, 436, 439
LweI	GCATC	2 cut(s)	75, 1122
MaeII	ACGT	4 cut(s)	445, 502, 661, 1143
MaeIII	GTNAC	2 cut(s)	219, 677
MalI	GATC	3 cut(s)	62, 393, 586
MboI	GATC	3 cut(s)	60, 391, 584
MboII	GAAGA	4 cut(s)	278, 290, 525, 1235
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	2 cut(s)	60, 584
MluCI	AATT	7 cut(s)	168, 186, 195, 210, 358, 523, 550
MlyI	GAGTC	2 cut(s)	27, 298
Mph1103I	ATGCAT	1 cut(s)	1335
MroXI	GAANNNNTTC	2 cut(s)	9, 285
MseI	TTAA	2 cut(s)	171, 465
MslI	CAYNNNNRTG	1 cut(s)	579
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	6 cut(s)	40, 127, 249, 1055, 1109, 1136
NdeI	CATATG	3 cut(s)	382, 484, 1335
NdeII	GATC	3 cut(s)	60, 391, 584
NlaIII	CATG	2 cut(s)	314, 904
NmeAIII	GCCGAG	2 cut(s)	54, 515
NsiI	ATGCAT	1 cut(s)	1335
PdmI	GAANNNNTTC	2 cut(s)	9, 285
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	4 cut(s)	120, 426, 429, 766
PleI	GAGTC	2 cut(s)	26, 298
PmaCI	CACGTG	1 cut(s)	446
PmlI	CACGTG	1 cut(s)	446
PpsI	GAGTC	2 cut(s)	26, 298
Ppu21I	YACGTR	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	364
PspCI	CACGTG	1 cut(s)	446
PspEI	GGTNACC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	33, 1346
PsrI	GAACNNNNNNTAC	2 cut(s)	670, 702
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	60, 584
RsaI	GTAC	2 cut(s)	416, 1231
RsaNI	GTAC	2 cut(s)	415, 1230
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	171, 465
SatI	GCNGC	4 cut(s)	119, 425, 428, 765
Sau3AI	GATC	3 cut(s)	60, 391, 584
Sau96I	GGNCC	2 cut(s)	33, 1346
SchI	GAGTC	2 cut(s)	27, 298
ScrFI	CCNGG	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	75, 1122
SfcI	CTRYAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	579
Sse9I	AATT	7 cut(s)	168, 186, 195, 210, 358, 523, 550
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	181, 683
TaiI	ACGT	4 cut(s)	448, 505, 664, 1146
TaqI	TCGA	1 cut(s)	21
TasI	AATT	7 cut(s)	168, 186, 195, 210, 358, 523, 550
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	171, 465
Tru9I	TTAA	2 cut(s)	171, 465
TscAI	CASTG	2 cut(s)	1029, 1083
TseI	GCWGC	3 cut(s)	118, 424, 427
TspGWI	ACGGA	2 cut(s)	147, 1263
TspRI	CASTG	2 cut(s)	1029, 1083
XapI	RAATTY	2 cut(s)	210, 358
XmnI	GAANNNNTTC	2 cut(s)	9, 285
Zsp2I	ATGCAT	1 cut(s)	1335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.