Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

25399121 .. 25402760

Gene Structure 3640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0171700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCATCATCCACGAGTAGGAGTATAGGCTTATGCCCATCTCCAATCTTCCCACCAAAGCATTATTCCCACTTGTCCCGCCAAACAATCAGAATGGCAACTCCTCCTCCTCCTTATGCGGTGGCTTCTTCAGGCAAAGCGAGTACTACTCTTACAGAGTATGTGGGTGATGGAGGTGTCGGTGTGGGAGATGATCTTGTGCTGCTCTTCCATCACATAGAGTATGCCTGCAAGAGAATCGCAGCTCTTGTGGCCTCTCCTTATAATAATTCAAGCCTTGCCAAACCCATGTCTCTGCCCACTGCTACTGGGTCTGGGTCCGACCGAGATGCACCCAAGCCCCTCGACATTGTTTCGAATGAAATCATCTTTTCATCTCTTAGAAATTCTGGAAAAGTAGCTGTCATGGCTTCAGAAGAAGATGATACTCCAGTTTGGATATCTGATGATGGTCCGTACGTAGTGGTAACAGATCCTCTAGACGGTTCACGAAACATTGAAGCATCCATTCCCACCGGAACAATCTTTGGGATTTATAAACGACTTGCAGAGCTCGATCATCTACCAAAGGAGGAGAAGGCTTTGCTGAATTCACTCCAGGTTGGAACTAGGCTTGTAGCTGCTGGCTATGTTCTTTATTCATCAGCCACAATCTTCTGTACCAGCTTTGGTGCAGGAACACATGCATTTACGCTGGATCATTCAACAGGAGATTTCATTCTCACACACCCAAGTTTAACAATTCCTCCTCGCGGACAAATATATTCTGTAAATGATGCTCGATACTTTGACTGGCCTGAAGGGTTAAGGAAGTATATAGACACTGTGAGACAAGGGAAAGGCAGATACCCCAAGAAGTATTCTGCCCGTTATATCTGTTCTTTGGTAGCTGATTTTCATCGAACTCTTCTGTATGGTGGAGTTGCAATGAATCCAAGGGACCATCTACGTCTTGTTTATGAAGCTAACCCTCTTAGCTTCCTGGTGGAGCAAGCTGGGGGTAAGGGTTCTGATGGTAAAAATAGAATTCTTTCAATACAGCCAATCAAGCTGCATCAGAGGCTGCCCCTATTTCTGGGAAGTCTAGAGGACATGGATGAGTTAGAGAGTTATGGAGATGTACAGCAGAAAGTGAACCCGGGATATGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

384

Amino Acids

41.84

Weight (kDa)

6.42

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	64 - 244	1.2e-36	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	248 - 371	2e-37	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	264, 537
AccII	CGCG	1 cut(s)	753
AciI	CCGC	3 cut(s)	79, 119, 753
AclWI	GGATC	2 cut(s)	467, 705
AcsI	RAATTY	3 cut(s)	385, 589, 1026
AcuI	CTGAAG	3 cut(s)	114, 396, 819
AfaI	GTAC	4 cut(s)	145, 458, 661, 1122
AfiI	CCNNNNNNNGG	4 cut(s)	18, 482, 752, 1075
AgsI	TTSAA	4 cut(s)	273, 500, 705, 1035
AjnI	CCWGG	2 cut(s)	597, 981
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	2 cut(s)	297, 823
AlwI	GGATC	2 cut(s)	467, 705
AlwNI	CAGNNNCTG	1 cut(s)	1063
Ama87I	CYCGRG	1 cut(s)	1138
AoxI	GGCC	2 cut(s)	252, 794
ApeKI	GCWGC	5 cut(s)	202, 242, 620, 1051, 1063
ApoI	RAATTY	3 cut(s)	385, 589, 1026
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspS9I	GGNCC	3 cut(s)	318, 452, 940
AsuC2I	CCSGG	2 cut(s)	1139, 1140
AsuHPI	GGTGA	1 cut(s)	179
AsuII	TTCGAA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	1138
AvaII	GGWCC	3 cut(s)	318, 452, 940
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BanII	GRGCYC	1 cut(s)	555
BauI	CACGAG	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	5 cut(s)	189, 254, 607, 1038, 1050
BccI	CCATC	6 cut(s)	46, 164, 219, 443, 951, 1007
BcgI	CGANNNNNNTGC	4 cut(s)	220, 254, 311, 345
BciT130I	CCWGG	2 cut(s)	599, 983
BcnI	CCSGG	2 cut(s)	1139, 1140
BcoDI	GTCTC	2 cut(s)	297, 823
BfaI	CTAG	3 cut(s)	479, 609, 1085
BisI	GCNGC	5 cut(s)	203, 243, 621, 1052, 1064
BlsI	GCNGC	5 cut(s)	204, 244, 622, 1053, 1065
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	4 cut(s)	599, 983, 1139, 1140
Bme18I	GGWCC	3 cut(s)	318, 452, 940
BmeT110I	CYCGRG	1 cut(s)	1138
BmgT120I	GGNCC	3 cut(s)	318, 452, 940
BmiI	GGNNCC	2 cut(s)	319, 941
BmrFI	CCNGG	4 cut(s)	599, 983, 1139, 1140
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	5 cut(s)	14, 319, 512, 766, 1063
BmuI	ACTGGG	1 cut(s)	318
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	2 cut(s)	414, 581
Bpu14I	TTCGAA	1 cut(s)	356
BpuMI	CCSGG	2 cut(s)	1139, 1140
BsaAI	YACGTR	1 cut(s)	460
BsaBI	GATNNNNATC	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	935, 1138
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 730, 760
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 482, 752, 1075
Bse1I	ACTGG	3 cut(s)	313, 431, 797
Bse3DI	GCAATG	1 cut(s)	933
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	2 cut(s)	599, 983
BseDI	CCNNGG	2 cut(s)	935, 1138
BseGI	GGATG	3 cut(s)	8, 503, 1102
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	4 cut(s)	18, 482, 752, 1075
BseMI	GCAATG	1 cut(s)	933
BseNI	ACTGG	3 cut(s)	313, 431, 797
BseRI	GAGGAG	5 cut(s)	93, 96, 99, 587, 738
BseXI	GCAGC	5 cut(s)	189, 254, 607, 1038, 1050
BseYI	CCCAGC	1 cut(s)	995
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	1 cut(s)	753
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	254, 796
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	1138
BsiSI	CCGG	2 cut(s)	516, 1139
BsiWI	CGTACG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	61, 953
BslI	CCNNNNNNNGG	4 cut(s)	18, 482, 752, 1075
BsmAI	GTCTC	2 cut(s)	297, 823
BsmFI	GGGAC	2 cut(s)	61, 953
BsnI	GGCC	2 cut(s)	254, 796
BsoBI	CYCGRG	1 cut(s)	1138
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp1407I	TGTACA	1 cut(s)	1120
Bsp143I	GATC	4 cut(s)	193, 472, 556, 697
BspACI	CCGC	3 cut(s)	79, 119, 753
BspANI	GGCC	2 cut(s)	254, 796
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	319, 941
BspPI	GGATC	2 cut(s)	467, 705
BspQI	GCTCTTC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	933
BsrGI	TGTACA	1 cut(s)	1120
BsrI	ACTGG	3 cut(s)	313, 431, 797
BssECI	CCNNGG	2 cut(s)	935, 1138
BssMI	GATC	4 cut(s)	193, 472, 556, 697
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	935
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	599, 983
Bst4CI	ACNGT	2 cut(s)	485, 826
Bst6I	CTCTTC	2 cut(s)	212, 912
BstAUI	TGTACA	1 cut(s)	1120
BstBAI	YACGTR	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	3 cut(s)	229, 625, 993
BstDEI	CTNAG	2 cut(s)	380, 974
BstF5I	GGATG	3 cut(s)	8, 503, 1102
BstFNI	CGCG	1 cut(s)	753
BstKTI	GATC	4 cut(s)	196, 475, 559, 700
BstMAI	GTCTC	2 cut(s)	297, 823
BstMBI	GATC	4 cut(s)	193, 472, 556, 697
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 407, 1048, 1060
BstNI	CCWGG	2 cut(s)	599, 983
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	4 cut(s)	597, 981, 1137, 1138
BstSNI	TACGTA	1 cut(s)	460
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	5 cut(s)	189, 254, 607, 1038, 1050
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	254, 796
BtsCI	GGATG	3 cut(s)	8, 503, 1102
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 822
Cac8I	GCNNGC	3 cut(s)	229, 625, 993
CaiI	CAGNNNCTG	1 cut(s)	1063
Cfr13I	GGNCC	3 cut(s)	318, 452, 940
Cfr9I	CCCGGG	1 cut(s)	1138
Csp6I	GTAC	4 cut(s)	144, 457, 660, 1121
CviAII	CATG	4 cut(s)	289, 406, 683, 1093
CviQI	GTAC	4 cut(s)	144, 457, 660, 1121
DdeI	CTNAG	2 cut(s)	380, 974
DpnI	GATC	4 cut(s)	195, 474, 558, 699
DpnII	GATC	4 cut(s)	193, 472, 556, 697
Eam1104I	CTCTTC	2 cut(s)	212, 912
EarI	CTCTTC	2 cut(s)	212, 912
Ecl136II	GAGCTC	1 cut(s)	553
Eco105I	TACGTA	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	935
Eco24I	GRGCYC	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	318, 452, 940
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	3 cut(s)	114, 396, 819
Eco88I	CYCGRG	1 cut(s)	1138
EcoICRI	GAGCTC	1 cut(s)	553
EcoRI	GAATTC	2 cut(s)	589, 1026
EcoRII	CCWGG	2 cut(s)	597, 981
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	935
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	935
FaeI	CATG	4 cut(s)	292, 409, 686, 1096
FaqI	GGGAC	2 cut(s)	61, 953
FatI	CATG	4 cut(s)	288, 405, 682, 1092
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	5 cut(s)	203, 243, 621, 1052, 1064
FokI	GGATG	2 cut(s)	490, 1109
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	5 cut(s)	203, 243, 621, 1052, 1064
FspBI	CTAG	3 cut(s)	479, 609, 1085
GluI	GCNGC	5 cut(s)	203, 243, 621, 1052, 1064
GsaI	CCCAGC	1 cut(s)	999
GsuI	CTGGAG	2 cut(s)	414, 581
HaeIII	GGCC	2 cut(s)	254, 796
HapII	CCGG	2 cut(s)	516, 1139
Hin1II	CATG	4 cut(s)	292, 409, 686, 1096
HinfI	GANTC	2 cut(s)	237, 931
HpaII	CCGG	2 cut(s)	516, 1139
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	488, 1135
Hpy188I	TCNGA	6 cut(s)	92, 322, 415, 445, 1012, 1059
Hpy188III	TCNNGA	4 cut(s)	390, 479, 489, 1085
Hpy8I	GTNNAC	2 cut(s)	488, 1135
HpyAV	CCTTC	2 cut(s)	571, 794
HpyCH4III	ACNGT	2 cut(s)	485, 826
HpyCH4IV	ACGT	2 cut(s)	459, 949
HpyCH4V	TGCA	7 cut(s)	231, 332, 548, 674, 686, 926, 1054
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 407, 1048, 1060
HpyF3I	CTNAG	2 cut(s)	380, 974
HpySE526I	ACGT	2 cut(s)	459, 949
Hsp92II	CATG	4 cut(s)	292, 409, 686, 1096
Kzo9I	GATC	4 cut(s)	193, 472, 556, 697
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	988
Lsp1109I	GCAGC	5 cut(s)	189, 254, 607, 1038, 1050
LweI	GCATC	5 cut(s)	14, 319, 512, 766, 1063
MaeI	CTAG	3 cut(s)	479, 609, 1085
MaeII	ACGT	2 cut(s)	459, 949
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	4 cut(s)	195, 474, 558, 699
MboI	GATC	4 cut(s)	193, 472, 556, 697
MboII	GAAGA	7 cut(s)	40, 120, 199, 428, 431, 646, 899
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	5 cut(s)	268, 385, 589, 741, 1026
MmeI	TCCRAC	2 cut(s)	345, 583
Mph1103I	ATGCAT	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	2 cut(s)	737, 806
MspI	CCGG	2 cut(s)	516, 1139
MspR9I	CCNGG	4 cut(s)	599, 983, 1139, 1140
MvaI	CCWGG	2 cut(s)	599, 983
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	4 cut(s)	251, 407, 1048, 1060
NciI	CCSGG	2 cut(s)	1139, 1140
NdeII	GATC	4 cut(s)	193, 472, 556, 697
NlaIII	CATG	4 cut(s)	292, 409, 686, 1096
NlaIV	GGNNCC	2 cut(s)	319, 941
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	2 cut(s)	237, 931
Pfl23II	CGTACG	1 cut(s)	456
PkrI	GCNGC	5 cut(s)	204, 244, 622, 1053, 1065
Ppu21I	YACGTR	1 cut(s)	460
PsiI	TTATAA	2 cut(s)	264, 537
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	597, 981
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	2 cut(s)	597, 981
PspLI	CGTACG	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	319, 941
PspPI	GGNCC	3 cut(s)	318, 452, 940
PstNI	CAGNNNCTG	1 cut(s)	1063
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	4 cut(s)	145, 458, 661, 1122
RsaNI	GTAC	4 cut(s)	144, 457, 660, 1121
SacI	GAGCTC	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	737, 806
SatI	GCNGC	5 cut(s)	203, 243, 621, 1052, 1064
Sau3AI	GATC	4 cut(s)	193, 472, 556, 697
Sau96I	GGNCC	3 cut(s)	318, 452, 940
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	4 cut(s)	599, 983, 1139, 1140
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	5 cut(s)	14, 319, 512, 766, 1063
SfuI	TTCGAA	1 cut(s)	356
SinI	GGWCC	3 cut(s)	318, 452, 940
SmaI	CCCGGG	1 cut(s)	1140
SnaBI	TACGTA	1 cut(s)	460
Sse9I	AATT	5 cut(s)	268, 385, 589, 741, 1026
SsiI	CCGC	3 cut(s)	79, 119, 753
SspMI	CTAG	3 cut(s)	479, 609, 1085
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	4 cut(s)	597, 981, 1137, 1138
StyI	CCWWGG	1 cut(s)	935
TaaI	ACNGT	2 cut(s)	485, 826
TaiI	ACGT	2 cut(s)	462, 952
TaqI	TCGA	5 cut(s)	345, 356, 555, 781, 901
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	5 cut(s)	268, 385, 589, 741, 1026
TatI	WGTACW	2 cut(s)	143, 1120
TfiI	GAWTC	2 cut(s)	237, 931
Tru1I	TTAA	2 cut(s)	737, 806
Tru9I	TTAA	2 cut(s)	737, 806
TscAI	CASTG	2 cut(s)	307, 829
TseI	GCWGC	5 cut(s)	202, 242, 620, 1051, 1063
TspDTI	ATGAA	7 cut(s)	363, 375, 630, 706, 887, 944, 975
TspGWI	ACGGA	1 cut(s)	444
TspMI	CCCGGG	1 cut(s)	1138
TspRI	CASTG	2 cut(s)	307, 829
VpaK11BI	GGWCC	3 cut(s)	318, 452, 940
XapI	RAATTY	3 cut(s)	385, 589, 1026
XbaI	TCTAGA	2 cut(s)	478, 1084
XceI	RCATGY	1 cut(s)	686
XmaI	CCCGGG	1 cut(s)	1138
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	3 cut(s)	479, 609, 1085
ZrmI	AGTACT	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.