Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

19191783 .. 19195684

Gene Structure 3902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G204800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGACAAGTTCCAGAGGGTCGAGAAGGTGAAGACCGCGGTGCCCATCAACGTCAACGAGATCCGTATCACTACCCAAGGTGCTATCAGAAACTACATCAGCTACGCTACCACTCTGCTTCAGGATAAGCAAGTAATTGAGATTGTCTTGAAAGCAATGGGACAGGCAATCAGCAAGACAGTGGCCATTGCTGAAATTATAAAGAAAAGGATTCCCTCGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAAGAGGGTCTTGAATCTGTGGAGACGACTCGTCATGTCTCAATGATTTCAATCACATTATCAATCAAGGAGCTAAACACAAGCTCTCCTGGGTATCAAGCTCCATATGTTGCTGAACAATCAAAGTCACAGCCCAATTACCAACAGCAGCAGCAACCAAAACAAGCGCGGGCTTCATACAATGCTGTCAATGAAGATTCATATGGCCGAGGTCGTGGACGTGGTAGAGGGAGAGGGCGGAATTGGGGCAGGGGTGGAGGATACGGCAACTATCAAGGTGGATATGGTAACTATCAAGGTGGATATGGAAACCATCAAGGTGGTTATGTAAACTATCAAGATAATGGTGGATATTCAAACCGGGGAAGAGGTGGAGGACGTGTCAGAGGTTGGGGTAATCGTGGTGCTGGTGGCTATGAAAGGGGTGCTGGTGGCTATGAACGGGGTGCGGGTGGTTATGAAAGGGGTGGTGCTGGTGGCTATGAAAGAGGAGGTGCTGGTGGCTATGAAAGAGGAGGTGCTGGTGGGAATGAAAGAGGAGGTGCTGGTGGGTATGAAAGAGGAAATGGTGCTGGTGGGTATGAAAGAGGAGGAGGTTCTGGTGGGTATGAAAGAGGAGGTGCTGGAGGATATGAAAGAGGTGCTGGTGGATATGAAAGAGGAGGTGCTGGTGGATATGAAAGAGGAGGTGCTGGAGTATATGAAAGAGGTACTGGTGGTTATGAAAAAGGCAGAGGTGGAGGGGGAAGAGGGTATGGCCGTGGGCGAGGACGGATGGGCGGGCGCACGAGGGGTGGTGCAAACCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

363

Amino Acids

37.95

Weight (kDa)

9.84

Isoelectric Point (pI)

19.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	2 cut(s)	38, 445
AciI	CCGC	6 cut(s)	36, 38, 445, 514, 725, 1056
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	3 cut(s)	183, 481, 1033
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	988
AflIII	ACRYGT	1 cut(s)	655
AgsI	TTSAA	5 cut(s)	151, 278, 290, 327, 633
AhdI	GACNNNNNGTC	1 cut(s)	306
AjiI	CACGTC	2 cut(s)	497, 656
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	5 cut(s)	102, 243, 349, 360, 377
AluI	AGCT	5 cut(s)	102, 243, 349, 360, 377
Alw26I	GTCTC	2 cut(s)	293, 319
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	3 cut(s)	183, 481, 1033
ApeKI	GCWGC	2 cut(s)	424, 427
AspLEI	GCGC	2 cut(s)	445, 1062
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	1063
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	436, 439
BccI	CCATC	4 cut(s)	53, 245, 597, 1045
BceAI	ACGGC	2 cut(s)	556, 1020
BciT130I	CCWGG	1 cut(s)	366
BciVI	GTATCC	1 cut(s)	530
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	2 cut(s)	293, 319
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	425, 428
BlsI	GCNGC	2 cut(s)	426, 429
Bme1390I	CCNGG	2 cut(s)	366, 638
BmeRI	GACNNNNNGTC	1 cut(s)	306
BmgBI	CACGTC	2 cut(s)	497, 656
BmiI	GGNNCC	2 cut(s)	42, 270
BmrFI	CCNGG	2 cut(s)	366, 638
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	921, 990
BpuMI	CCSGG	1 cut(s)	638
BsaBI	GATNNNNATC	2 cut(s)	65, 326
BsaJI	CCNNGG	6 cut(s)	36, 76, 365, 484, 637, 1036
BsaXI	ACNNNNNCTCC	4 cut(s)	346, 376, 642, 672
Bse1I	ACTGG	1 cut(s)	994
Bse3DI	GCAATG	2 cut(s)	162, 186
Bse8I	GATNNNNATC	2 cut(s)	65, 326
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	6 cut(s)	36, 76, 365, 484, 637, 1036
BseGI	GGATG	1 cut(s)	1056
BseJI	GATNNNNATC	2 cut(s)	65, 326
BseMI	GCAATG	2 cut(s)	162, 186
BseNI	ACTGG	1 cut(s)	994
BseRI	GAGGAG	8 cut(s)	780, 804, 828, 879, 882, 906, 951, 975
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	436, 439
Bsh1236I	CGCG	2 cut(s)	38, 445
BshFI	GGCC	3 cut(s)	185, 483, 1035
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	637
BslFI	GGGAC	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	293, 319
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	3 cut(s)	185, 483, 1035
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	6 cut(s)	36, 38, 445, 514, 725, 1056
BspANI	GGCC	3 cut(s)	185, 483, 1035
BspFNI	CGCG	2 cut(s)	38, 445
BspLI	GGNNCC	2 cut(s)	42, 270
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	2 cut(s)	162, 186
BsrI	ACTGG	1 cut(s)	994
BssECI	CCNNGG	6 cut(s)	36, 76, 365, 484, 637, 1036
BssMI	GATC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	1063
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	1063
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	3 cut(s)	273, 637, 1018
BstC8I	GCNNGC	2 cut(s)	447, 1058
BstDSI	CCRYGG	2 cut(s)	36, 1036
BstF5I	GGATG	1 cut(s)	1056
BstFNI	CGCG	2 cut(s)	38, 445
BstHHI	GCGC	2 cut(s)	445, 1062
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	293, 319
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 1082
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	364, 636
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	2 cut(s)	38, 445
BstV1I	GCAGC	2 cut(s)	436, 439
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	185, 483, 1035
BtgI	CCRYGG	2 cut(s)	36, 1036
BtrI	CACGTC	2 cut(s)	497, 656
BtsCI	GGATG	1 cut(s)	1056
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	447, 1058
CfoI	GCGC	2 cut(s)	445, 1062
Cfr42I	CCGCGG	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	987
CviAII	CATG	1 cut(s)	311
CviQI	GTAC	1 cut(s)	987
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DriI	GACNNNNNGTC	1 cut(s)	306
EaeI	YGGCCR	3 cut(s)	183, 481, 1033
Eam1104I	CTCTTC	3 cut(s)	273, 637, 1018
Eam1105I	GACNNNNNGTC	1 cut(s)	306
EarI	CTCTTC	3 cut(s)	273, 637, 1018
EciI	GGCGGA	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	1 cut(s)	314
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	310
FauI	CCCGC	3 cut(s)	438, 718, 1049
FauNDI	CATATG	2 cut(s)	382, 478
Fnu4HI	GCNGC	2 cut(s)	425, 428
FokI	GGATG	1 cut(s)	1063
Fsp4HI	GCNGC	2 cut(s)	425, 428
GlaI	GCGC	2 cut(s)	444, 1061
GluI	GCNGC	2 cut(s)	425, 428
GsuI	CTGGAG	2 cut(s)	921, 990
HaeIII	GGCC	3 cut(s)	185, 483, 1035
HapII	CCGG	1 cut(s)	637
HhaI	GCGC	2 cut(s)	445, 1062
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	2 cut(s)	443, 1060
HinP1I	GCGC	2 cut(s)	443, 1060
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	211, 290, 304, 473
HpaII	CCGG	1 cut(s)	637
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	3 cut(s)	55, 494, 607
Hpy188I	TCNGA	2 cut(s)	89, 662
Hpy188III	TCNNGA	7 cut(s)	13, 22, 122, 148, 227, 287, 614
Hpy8I	GTNNAC	3 cut(s)	55, 494, 607
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	3 cut(s)	51, 496, 655
HpyCH4V	TGCA	2 cut(s)	223, 1076
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 1082
HpySE526I	ACGT	3 cut(s)	51, 496, 655
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	2 cut(s)	443, 1060
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	346, 382
Lsp1109I	GCAGC	2 cut(s)	436, 439
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	3 cut(s)	51, 496, 655
MaeIII	GTNAC	2 cut(s)	402, 563
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	5 cut(s)	43, 290, 482, 654, 1035
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	4 cut(s)	135, 195, 412, 517
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	298
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	637
MspR9I	CCNGG	2 cut(s)	366, 638
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	2 cut(s)	38, 445
MwoI	GCNNNNNNNGC	2 cut(s)	249, 1082
NciI	CCSGG	1 cut(s)	638
NdeI	CATATG	2 cut(s)	382, 478
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	2 cut(s)	42, 270
NmeAIII	GCCGAG	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	211, 290, 473
PkrI	GCNGC	2 cut(s)	426, 429
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	42, 270
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	1 cut(s)	988
RsaNI	GTAC	1 cut(s)	987
RseI	CAYNNNNRTG	1 cut(s)	594
SacII	CCGCGG	1 cut(s)	39
SatI	GCNGC	2 cut(s)	425, 428
Sau3AI	GATC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	366, 638
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	232
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	594
Sse9I	AATT	4 cut(s)	135, 195, 412, 517
SsiI	CCGC	6 cut(s)	36, 38, 445, 514, 725, 1056
StyD4I	CCNGG	2 cut(s)	364, 636
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	3 cut(s)	54, 499, 658
TaqI	TCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	135, 195, 412, 517
TfiI	GAWTC	3 cut(s)	211, 290, 473
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	2 cut(s)	424, 427
Tsp45I	GTSAC	1 cut(s)	402
TspGWI	ACGGA	2 cut(s)	53, 1063
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.