Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

46328495 .. 46334145

Gene Structure 5651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG285100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGGGTTCCAATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTTCAATTACACTATCAACTAAGGAGTTAAACACAACTTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGATTCATATGGTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACGGCAACTATCAAGGTGGATATGGCAACTATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGCTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTGGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCCGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCTGGTGGAAATGATAGAGGTCCTGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCCAGTGGGAATGATAGAGGTGCTGGTGGCTATGAAAGAGGTTCTGGTGGGTATGACAGAGGTACCGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGTGAACCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

332

Amino Acids

34.66

Weight (kDa)

9.86

Isoelectric Point (pI)

19.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	875
AccB1I	GGYRCC	5 cut(s)	611, 653, 713, 812, 875
AciI	CCGC	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	3 cut(s)	135, 877, 898
AfiI	CCNNNNNNNGG	3 cut(s)	476, 515, 554
AgeI	ACCGGT	1 cut(s)	878
AgsI	TTSAA	1 cut(s)	171
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	775, 990
AluBI	AGCT	4 cut(s)	87, 221, 284, 447
AluI	AGCT	4 cut(s)	87, 221, 284, 447
AoxI	GGCC	1 cut(s)	506
AsiGI	ACCGGT	1 cut(s)	878
Asp718I	GGTACC	1 cut(s)	875
AspS9I	GGNCC	4 cut(s)	290, 507, 545, 773
AvaII	GGWCC	3 cut(s)	290, 545, 773
BaeI	ACNNNNGTAYC	2 cut(s)	859, 892
BanI	GGYRCC	5 cut(s)	611, 653, 713, 812, 875
BauI	CACGAG	1 cut(s)	285
BccI	CCATC	3 cut(s)	89, 232, 955
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	777, 992
BciVI	GTATCC	2 cut(s)	365, 477
BfaI	CTAG	2 cut(s)	233, 975
BfuI	GTATCC	2 cut(s)	365, 477
Bme1390I	CCNGG	2 cut(s)	777, 992
Bme18I	GGWCC	3 cut(s)	290, 545, 773
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	290, 507, 545, 773
BmiI	GGNNCC	7 cut(s)	57, 114, 613, 655, 715, 814, 877
BmrFI	CCNGG	2 cut(s)	777, 992
BmsI	GCATC	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	878
Bsc4I	CCNNNNNNNGG	3 cut(s)	476, 515, 554
Bse118I	RCCGGY	4 cut(s)	614, 656, 716, 878
Bse1I	ACTGG	2 cut(s)	816, 904
BseBI	CCWGG	2 cut(s)	777, 992
BseGI	GGATG	1 cut(s)	966
BseLI	CCNNNNNNNGG	3 cut(s)	476, 515, 554
BseNI	ACTGG	2 cut(s)	816, 904
BseRI	GAGGAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	5 cut(s)	611, 653, 713, 812, 875
BshTI	ACCGGT	1 cut(s)	878
BsiSI	CCGG	4 cut(s)	615, 657, 717, 879
BslFI	GGGAC	3 cut(s)	18, 348, 969
BslI	CCNNNNNNNGG	3 cut(s)	476, 515, 554
BsmFI	GGGAC	3 cut(s)	18, 348, 969
BsnI	GGCC	1 cut(s)	508
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	508
BspLI	GGNNCC	7 cut(s)	57, 114, 613, 655, 715, 814, 877
BspT107I	GGYRCC	5 cut(s)	611, 653, 713, 812, 875
BsrFI	RCCGGY	4 cut(s)	614, 656, 716, 878
BsrI	ACTGG	2 cut(s)	816, 904
BssAI	RCCGGY	4 cut(s)	614, 656, 716, 878
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	777, 992
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	2 cut(s)	44, 475
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	966
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	2 cut(s)	777, 992
BstSCI	CCNGG	2 cut(s)	775, 990
BsuI	GTATCC	2 cut(s)	365, 477
BsuRI	GGCC	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	966
BtsIMutI	CAGTG	2 cut(s)	30, 823
Cfr10I	RCCGGY	4 cut(s)	614, 656, 716, 878
Cfr13I	GGNCC	4 cut(s)	290, 507, 545, 773
CseI	GACGC	1 cut(s)	978
Csp6I	GTAC	3 cut(s)	134, 876, 897
CspAI	ACCGGT	1 cut(s)	878
CviAII	CATG	1 cut(s)	155
CviQI	GTAC	3 cut(s)	134, 876, 897
DdeI	CTNAG	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	44, 475
EarI	CTCTTC	2 cut(s)	44, 475
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	3 cut(s)	290, 545, 773
Eco57I	CTGAAG	1 cut(s)	534
EcoO109I	RGGNCCY	2 cut(s)	545, 773
EcoRII	CCWGG	2 cut(s)	775, 990
EcoRV	GATATC	1 cut(s)	215
FaeI	CATG	1 cut(s)	158
FaqI	GGGAC	3 cut(s)	18, 348, 969
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	319
FokI	GGATG	1 cut(s)	973
FspBI	CTAG	2 cut(s)	233, 975
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	4 cut(s)	615, 657, 717, 879
HgaI	GACGC	1 cut(s)	978
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	2 cut(s)	148, 314
HpaII	CCGG	4 cut(s)	615, 657, 717, 879
Hpy166II	GTNNAC	3 cut(s)	491, 968, 988
Hpy188III	TCNNGA	3 cut(s)	71, 452, 543
Hpy8I	GTNNAC	3 cut(s)	491, 968, 988
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	158
KpnI	GGTACC	1 cut(s)	879
LmnI	GCTCC	1 cut(s)	226
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	233, 975
MaeII	ACGT	1 cut(s)	337
MboII	GAAGA	3 cut(s)	61, 323, 492
MluCI	AATT	2 cut(s)	171, 256
MlyI	GAGTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	194
MspI	CCGG	4 cut(s)	615, 657, 717, 879
MspR9I	CCNGG	2 cut(s)	777, 992
MvaI	CCWGG	2 cut(s)	777, 992
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeI	CATATG	1 cut(s)	319
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	7 cut(s)	57, 114, 613, 655, 715, 814, 877
PfeI	GAWTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	878
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	2 cut(s)	545, 773
Psp5II	RGGWCCY	2 cut(s)	545, 773
Psp6I	CCWGG	2 cut(s)	775, 990
PspGI	CCWGG	2 cut(s)	775, 990
PspN4I	GGNNCC	7 cut(s)	57, 114, 613, 655, 715, 814, 877
PspPI	GGNCC	4 cut(s)	290, 507, 545, 773
PspPPI	RGGWCCY	2 cut(s)	545, 773
RsaI	GTAC	3 cut(s)	135, 877, 898
RsaNI	GTAC	3 cut(s)	134, 876, 897
SaqAI	TTAA	1 cut(s)	194
Sau96I	GGNCC	4 cut(s)	290, 507, 545, 773
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	777, 992
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	3 cut(s)	290, 545, 773
Sse9I	AATT	2 cut(s)	171, 256
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	2 cut(s)	233, 975
StyD4I	CCNGG	2 cut(s)	775, 990
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	325
TasI	AATT	2 cut(s)	171, 256
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	30, 823
TspGWI	ACGGA	1 cut(s)	973
TspRI	CASTG	2 cut(s)	30, 823
VpaK11BI	GGWCC	3 cut(s)	290, 545, 773
XspI	CTAG	2 cut(s)	233, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.