FvH4_6g37350

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003504
Physical Location & Seq
Reverse (-)
29419829 .. 29422348
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37350.t1

Sequence Viewer

Length: 267 bp
ATGGAAAGCTACCGGAGAGTCAAGAAGCCGAAGCCGAAGCCGGAGCTCCCCCTCAGCGAGAACGAGGTCCGAATCACCACCCAGGGCTCCATCAGAAAGTACCTCAACTATGTCACCACTCAGCTCCAGGATAAACAAGTCAGTGAAATTGTCTTGAAAGCAATGGGACAGGCAATCATCAAGACGGTGGCCATTGCTGAAATCATAAAGGTCTTTATCATAAACCATCTCCTCTGCCCAGTTTCATACTTCCCAGTTCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

89

Amino Acids

10.11

Weight (kDa)

9.67

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 21 - 70 1.2e-11 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 189
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 2 cut(s) 81, 126
AluBI AGCT 3 cut(s) 9, 46, 124
AluI AGCT 3 cut(s) 9, 46, 124
Alw21I GWGCWC 1 cut(s) 48
AoxI GGCC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 67, 106
AvaII GGWCC 1 cut(s) 67
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 2 cut(s) 48, 89
Bbv12I GWGCWC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 98, 234
BciT130I CCWGG 2 cut(s) 83, 128
Bme1390I CCNGG 2 cut(s) 83, 128
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 83, 128
BmrI ACTGGG 2 cut(s) 233, 248
BmuI ACTGGG 2 cut(s) 233, 248
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 81, 82
BsaWI WCCGGW 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 239, 254
Bse3DI GCAATG 2 cut(s) 168, 192
BseBI CCWGG 2 cut(s) 83, 128
BseDI CCNNGG 2 cut(s) 81, 82
BseMI GCAATG 2 cut(s) 168, 192
BseMII CTCAG 2 cut(s) 67, 134
BseNI ACTGG 2 cut(s) 239, 254
BseRI GAGGAG 1 cut(s) 221
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 13, 41
BslFI GGGAC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 48, 89
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 66, 133
BspLI GGNNCC 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 168, 192
BsrI ACTGG 2 cut(s) 239, 254
BssECI CCNNGG 2 cut(s) 81, 82
Bst2UI CCWGG 2 cut(s) 83, 128
Bst4CI ACNGT 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 53, 120
BstNI CCWGG 2 cut(s) 83, 128
BstSCI CCNGG 2 cut(s) 81, 126
BsuRI GGCC 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 8 cut(s) 9, 28, 34, 40, 46, 87, 124, 191
CviKI_1 RGCY 8 cut(s) 9, 28, 34, 40, 46, 87, 124, 191
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 53, 120
EaeI YGGCCR 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 2 cut(s) 48, 89
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 81, 126
EcoT38I GRGCYC 2 cut(s) 48, 89
FaiI YATR 4 cut(s) 111, 206, 221, 247
FaqI GGGAC 1 cut(s) 180
FriOI GRGCYC 2 cut(s) 48, 89
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 191
HapII CCGG 2 cut(s) 13, 41
HinfI GANTC 2 cut(s) 18, 72
HpaII CCGG 2 cut(s) 13, 41
HphI GGTGA 2 cut(s) 67, 106
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 71, 95
Hpy188III TCNNGA 3 cut(s) 22, 154, 181
Hpy8I GTNNAC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 53, 120
LmnI GCTCC 4 cut(s) 43, 51, 92, 129
LpnPI CCDG 8 cut(s) 26, 54, 68, 95, 113, 140, 155, 252
MaeIII GTNAC 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 48, 89
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 4 cut(s) 58, 62, 113, 242
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 13, 41
MspR9I CCNGG 2 cut(s) 83, 128
MvaI CCWGG 2 cut(s) 83, 128
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 112
PasI CCCWGGG 1 cut(s) 82
PfeI GAWTC 1 cut(s) 72
PfoI TCCNGGA 1 cut(s) 126
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 81, 126
PspGI CCWGG 2 cut(s) 81, 126
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SacI GAGCTC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 83, 128
SduI GDGCHC 2 cut(s) 48, 89
SetI ASST 6 cut(s) 11, 48, 69, 105, 126, 213
SinI GGWCC 1 cut(s) 67
Sse9I AATT 1 cut(s) 147
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 81, 126
TaaI ACNGT 1 cut(s) 187
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 72
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.