Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

16448375 .. 16452285

Gene Structure 3911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19311.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAAAGCTACCGGAGAGTCGAGAAGCCAAAGCCGGAGCTCCCCATCAGCGAGAACGAGATCCGAATCACCACCCAGGGCGCCATCCGAAACTACATCAGCTACGCCACCACTCAGCTCCAGGATAAACAAGTCAATGAAATTGTCTTGAAAGCAATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAGATAATAAAGAAAAGGGTTCCAATGCTGCATCAAGATACTGCAATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAAGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTATCAATGATTTCAATTACACTATCAACTAAGGAGCTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCCAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGACTCATACGGTCGAGGACGGGGGCGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACAGCAACTATCAAGGGGGATACACAAACTATCAAGGGGGTGGTTATGGAAACCATCAAGATAATGGTGGGTACCCAAATCGGGGTAGAGGAAACCATCAAGATAATGGTGGGTACCCGAATCGGGGTAGAGGTGGTGGACGAGGCAGAAGTTGGGGCAATCGTGGTACTGGCTATGAAAGAGGGTCTGGTGGTTATGAAAGAAGTTCAGGACCATCAGGGGGATACGAAAGGGGTACAGGCGGCTATGAAAGGGGTTCAGGCGGATCAGGGGGATACGAAAGGGGTTCAGGCGGATCAGGGGGCTACGAAAGGGGTACAGGCGGATCAGGGGGCTACGAAAGGGGTTCAGGCGGCTACGAAAGGGGTACCGGCGGCTACGAAAGGGGTTCAGGCGGCTACGAAAGGGGTACCGGCGGCTACGAAAGGGGTTCAGGCGGCTACGAAAGGGGTGCCGGCGGCTATGAAAGAGGTGCCGGTGGTACTGGTGGTTATGAAGGAGGTAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCAAACCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

371

Amino Acids

39.03

Weight (kDa)

9.85

Isoelectric Point (pI)

24.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	19 - 82	9.4e-16	Alba

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	4 cut(s)	600, 642, 896, 938
AccB1I	GGYRCC	7 cut(s)	80, 600, 642, 896, 938, 980, 1001
AclWI	GGATC	4 cut(s)	55, 802, 832, 862
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	9 cut(s)	291, 602, 644, 697, 766, 847, 898, 940, 1012
AfiI	CCNNNNNNNGG	5 cut(s)	610, 611, 652, 653, 749
AgsI	TTSAA	3 cut(s)	151, 278, 327
AjnI	CCWGG	2 cut(s)	75, 120
AluBI	AGCT	9 cut(s)	9, 40, 102, 118, 243, 349, 377, 440, 1109
AluI	AGCT	9 cut(s)	9, 40, 102, 118, 243, 349, 377, 440, 1109
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	4 cut(s)	55, 802, 832, 862
ApeKI	GCWGC	1 cut(s)	220
Asp718I	GGTACC	4 cut(s)	600, 642, 896, 938
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	446, 740
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	446, 740
BanI	GGYRCC	7 cut(s)	80, 600, 642, 896, 938, 980, 1001
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	7 cut(s)	53, 92, 388, 591, 633, 751, 1069
BcgI	CGANNNNNNTGC	2 cut(s)	962, 996
BciT130I	CCWGG	2 cut(s)	77, 122
BciVI	GTATCC	4 cut(s)	521, 542, 746, 797
BfaI	CTAG	1 cut(s)	1089
BfoI	RGCGCY	1 cut(s)	84
BfuI	GTATCC	4 cut(s)	521, 542, 746, 797
BisI	GCNGC	8 cut(s)	221, 772, 883, 904, 925, 946, 967, 988
BlsI	GCNGC	8 cut(s)	222, 773, 884, 905, 926, 947, 968, 989
Bme1390I	CCNGG	2 cut(s)	77, 122
Bme18I	GGWCC	2 cut(s)	446, 740
BmgT120I	GGNCC	2 cut(s)	446, 740
BmiI	GGNNCC	9 cut(s)	82, 213, 270, 602, 644, 898, 940, 982, 1003
BmrFI	CCNGG	2 cut(s)	77, 122
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	75, 76
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	5 cut(s)	610, 611, 652, 653, 749
Bse118I	RCCGGY	4 cut(s)	899, 941, 983, 1004
Bse1I	ACTGG	2 cut(s)	703, 1018
Bse3DI	GCAATG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	77, 122
BseDI	CCNNGG	2 cut(s)	75, 76
BseGI	GGATG	2 cut(s)	84, 1080
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	5 cut(s)	610, 611, 652, 653, 749
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	128, 183
BseNI	ACTGG	2 cut(s)	703, 1018
BseXI	GCAGC	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	481
BshNI	GGYRCC	7 cut(s)	80, 600, 642, 896, 938, 980, 1001
BsiEI	CGRYCG	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	6 cut(s)	13, 35, 900, 942, 984, 1005
BslFI	GGGAC	2 cut(s)	174, 1083
BslI	CCNNNNNNNGG	5 cut(s)	610, 611, 652, 653, 749
BsmFI	GGGAC	2 cut(s)	174, 1083
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	60, 794, 824, 854
BspCNI	CTCAG	2 cut(s)	127, 184
BspLI	GGNNCC	9 cut(s)	82, 213, 270, 602, 644, 898, 940, 982, 1003
BspPI	GGATC	4 cut(s)	55, 802, 832, 862
BspT107I	GGYRCC	7 cut(s)	80, 600, 642, 896, 938, 980, 1001
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	4 cut(s)	899, 941, 983, 1004
BsrI	ACTGG	2 cut(s)	703, 1018
BssAI	RCCGGY	4 cut(s)	899, 941, 983, 1004
BssECI	CCNNGG	2 cut(s)	75, 76
BssMI	GATC	4 cut(s)	60, 794, 824, 854
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	77, 122
Bst4CI	ACNGT	2 cut(s)	181, 479
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	985
BstDEI	CTNAG	3 cut(s)	114, 192, 342
BstF5I	GGATG	2 cut(s)	84, 1080
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	4 cut(s)	63, 797, 827, 857
BstMBI	GATC	4 cut(s)	60, 794, 824, 854
BstMCI	CGRYCG	1 cut(s)	481
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 1106
BstNI	CCWGG	2 cut(s)	77, 122
BstSCI	CCNGG	2 cut(s)	75, 120
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuI	GTATCC	4 cut(s)	521, 542, 746, 797
BtsCI	GGATG	2 cut(s)	84, 1080
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	985
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	4 cut(s)	899, 941, 983, 1004
Cfr13I	GGNCC	2 cut(s)	446, 740
CseI	GACGC	1 cut(s)	1092
Csp6I	GTAC	9 cut(s)	290, 601, 643, 696, 765, 846, 897, 939, 1011
CviAII	CATG	1 cut(s)	311
CviQI	GTAC	9 cut(s)	290, 601, 643, 696, 765, 846, 897, 939, 1011
DdeI	CTNAG	3 cut(s)	114, 192, 342
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	4 cut(s)	62, 796, 826, 856
DpnII	GATC	4 cut(s)	60, 794, 824, 854
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	3 cut(s)	807, 837, 867
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	446, 740
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	75, 120
EcoRV	GATATC	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	42
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
FaeI	CATG	1 cut(s)	314
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	174, 1083
FatI	CATG	1 cut(s)	310
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	8 cut(s)	221, 772, 883, 904, 925, 946, 967, 988
FokI	GGATG	2 cut(s)	71, 1087
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	8 cut(s)	221, 772, 883, 904, 925, 946, 967, 988
FspBI	CTAG	1 cut(s)	1089
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	8 cut(s)	221, 772, 883, 904, 925, 946, 967, 988
GsuI	CTGGAG	1 cut(s)	104
HaeII	RGCGCY	1 cut(s)	84
HapII	CCGG	6 cut(s)	13, 35, 900, 942, 984, 1005
HgaI	GACGC	1 cut(s)	1092
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	1107
HinfI	GANTC	5 cut(s)	18, 66, 304, 470, 649
HpaII	CCGG	6 cut(s)	13, 35, 900, 942, 984, 1005
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	668, 1082
Hpy188I	TCNGA	2 cut(s)	65, 89
Hpy188III	TCNNGA	6 cut(s)	22, 148, 227, 587, 629, 738
Hpy8I	GTNNAC	2 cut(s)	668, 1082
HpyAV	CCTTC	1 cut(s)	1019
HpyCH4III	ACNGT	2 cut(s)	181, 479
HpyCH4V	TGCA	3 cut(s)	223, 236, 1100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 1106
HpyF3I	CTNAG	3 cut(s)	114, 192, 342
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	81
KasI	GGCGCC	1 cut(s)	80
KpnI	GGTACC	4 cut(s)	604, 646, 900, 942
KroI	GCCGGC	1 cut(s)	983
KroNI	GCCGGC	1 cut(s)	985
Kzo9I	GATC	4 cut(s)	60, 794, 824, 854
LmnI	GCTCC	5 cut(s)	37, 45, 123, 346, 382
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	1089
MalI	GATC	4 cut(s)	62, 796, 826, 856
MboI	GATC	4 cut(s)	60, 794, 824, 854
MboII	GAAGA	2 cut(s)	290, 479
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	3 cut(s)	141, 327, 412
Mly113I	GGCGCC	1 cut(s)	81
MlyI	GAGTC	3 cut(s)	27, 298, 464
MroNI	GCCGGC	1 cut(s)	983
MseI	TTAA	1 cut(s)	1111
MspI	CCGG	6 cut(s)	13, 35, 900, 942, 984, 1005
MspR9I	CCNGG	2 cut(s)	77, 122
MvaI	CCWGG	2 cut(s)	77, 122
MwoI	GCNNNNNNNGC	2 cut(s)	249, 1106
NaeI	GCCGGC	1 cut(s)	985
NarI	GGCGCC	1 cut(s)	81
NdeII	GATC	4 cut(s)	60, 794, 824, 854
NgoMIV	GCCGGC	1 cut(s)	983
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	9 cut(s)	82, 213, 270, 602, 644, 898, 940, 982, 1003
PasI	CCCWGGG	1 cut(s)	76
PdiI	GCCGGC	1 cut(s)	985
PfeI	GAWTC	2 cut(s)	66, 649
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	8 cut(s)	222, 773, 884, 905, 926, 947, 968, 989
PleI	GAGTC	3 cut(s)	26, 298, 464
PluTI	GGCGCC	1 cut(s)	84
PpsI	GAGTC	3 cut(s)	26, 298, 464
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	75, 120
PspGI	CCWGG	2 cut(s)	75, 120
PspN4I	GGNNCC	9 cut(s)	82, 213, 270, 602, 644, 898, 940, 982, 1003
PspPI	GGNCC	2 cut(s)	446, 740
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	9 cut(s)	291, 602, 644, 697, 766, 847, 898, 940, 1012
RsaNI	GTAC	9 cut(s)	290, 601, 643, 696, 765, 846, 897, 939, 1011
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	1111
SatI	GCNGC	8 cut(s)	221, 772, 883, 904, 925, 946, 967, 988
Sau3AI	GATC	4 cut(s)	60, 794, 824, 854
Sau96I	GGNCC	2 cut(s)	446, 740
SchI	GAGTC	3 cut(s)	27, 298, 464
ScrFI	CCNGG	2 cut(s)	77, 122
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	232
SfoI	GGCGCC	1 cut(s)	82
SinI	GGWCC	2 cut(s)	446, 740
Sse9I	AATT	3 cut(s)	141, 327, 412
SspDI	GGCGCC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	1089
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	75, 120
TaaI	ACNGT	2 cut(s)	181, 479
TaqI	TCGA	2 cut(s)	21, 481
TasI	AATT	3 cut(s)	141, 327, 412
TauI	GCSGC	7 cut(s)	774, 885, 906, 927, 948, 969, 990
TfiI	GAWTC	2 cut(s)	66, 649
Tru1I	TTAA	1 cut(s)	1111
Tru9I	TTAA	1 cut(s)	1111
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	7 cut(s)	153, 480, 720, 741, 792, 1008, 1038
TspGWI	ACGGA	1 cut(s)	1087
TspRI	CASTG	1 cut(s)	186
VpaK11BI	GGWCC	2 cut(s)	446, 740
XcmI	CCANNNNNNNNNTGG	2 cut(s)	590, 632
XspI	CTAG	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.