Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003504

Physical Location & Seq

Genomic Coordinates Reverse (-)

25345247 .. 25356058

Gene Structure 10812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGGGAAGCACCTTTCTCTCTCTACCAGCGAAGCGTTCAATTTCTTCGACAATGTCCTCCTCTTCCTCCGAGCCCAGCTTAGAAAACGGATCCTCCAAGCGCTCCAGGCCGCGCCAGCAGCAGGCTCCGCTCACTGTTCCTCCCGGCCACGTCGCCTTCCGCATGCTCTGCCACGCCTCCCGCATCGGCGGCGTCATCGGCAAGTCCGGCACCGTCATCAAGCAGCTCCAGCAGGCCACCGGCGCAAAGATCAGAATCGAGGAGCCGCCCCAACTCGACTCGCCGGACCGGGTCGTCGTCGTCATCGCTCCCAGCGCAATCCGGTCCAAGATTGTGCTCAGTGGAGACCAAGAGATTGAGGTTTCCAAGGCGCAAGAGGCGCTTTTGAGAGTGTTCGAGAGGATTCTAGAGGTGGCGGCGGAGACCGGAGCGATAGGAGTAGGGGTTGGAGTGGTGTCTTGCCGGTTTCTGGCGGGGACGGCGCAGGTCGGCTCGGTGATAGGCAAGGGCGGCAAGGTGGTGGAGAAGATTAGAAAAGAGACTGGCTGTAAAATTAGGGTCTTGAATGAGAAATTGCCCGTTTGTGCTGCTCCTTCTGACGAGATGGTTGAGATAGAAGGGGATATTTTGGCTGTAAAGAAAGCACTTGTTGCTGTCTCCGGCCGTCTTCAAGATTGTTCACCAGTTGACAAGACAAGGATGACTGGAAGTAGGCCTATTGAGACAGTTCCTCGTGAAACTTTACCTGATAGTCGTGTAGATCACCTTTCACACAGGAACTCAGTGATTTCCAATTTGCCGAGCAGCTCCATGAGTTATGCTTCAGGAGTTCGTCCGCCATCGATAGAGGCTGAAAGGATCTCAACACTCAATACAAGAACGCTCCAGCAGGAAGTTACTTTTAAGATTCTTTGTGCCAATGATAGGGTTGGGGGTGTCATTGGAAAGGGGGGTGCCATTGTCAGGGCTCTTCAGAATGAGACTGGTGCTACTATTAGTGTTGGAGGATCTGTGGCCGAGTGTGATGAAAGATTAATTACTGTTACTGCATCAGAGAATCCTGAGGCCCGCTACTCGCCAGCACAAAAGGGTCTTGTTCTTGTCTTCTCAAGGTCTGTAGAGGCGGGCATTGAAAAGGGGCAAGACTCGAGCTCCAAAGGGTCACCTCTTATTGCGCGCCTTGTTGTCCCGACAAGCCAAGTTGGTTGTTTGCTGGGAAAAGGGGGTGTAATAGTTTCAGAGATTCGGAAGGTAACTGGTACCAGTATACGGATAATAGGTGGTGACCAGGTCCCGAAGTGTGCCTTAGAGAATGACGAAGTTGTACAGGTTTCAGGAGATTTTTCAAATGTGCAAGATGCTTTGTACAATATTACTGGTAGGTTACGAGATAACCTTTTCTCCAACACAGTAAATAATTCTGGAAGGAGGAATAGTTCAGCCGTGCTAACAGATACCAGTCCTTATGGAAGACTCAGGGATCCTGCTCCTATTGGATTTCAGCCTTCTTCATCAGTTGGTGTTACTCATGGTCTCGGTCGACATACTACTCTAACTCAAAGTATGGATCATCTTGGACTTTCCCATAATTTAGATCATCCTTCTTCACCAAGGCCATGGGCATCACAGATGGTTGCTCCAAGGGGAATCTCAGATACTGGTAGGGGTTTGACTTCTCTAAAAAGTGGCTCGGATCTTGGCAGTGGAAGCAAATCTGCCATCGTGACAAATACAACTGTAGAGGTCATAGTTCCTGAAAATGTTATTAGCTCAGTGTATGGAGAGAATGGCACCAATTTGGCTCGACTGAGACAGATTTCCGGTGCCAAGGTCATAGTGCATGAACCCCGTCCTGGAACAACTGATAGGATTATTGTCATATCTGGGACACCTGACGAAACCCAGGCAGCACAGAGCCTCCTCCACGCATTCATTCTCACCGGTCCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

650

Amino Acids

68.45

Weight (kDa)

9.2

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	53 - 104	2.5e-12	KH domain
KH_1	PF00013	160 - 219	6.8e-13	KH domain
KH_1	PF00013	300 - 353	1.5e-11	KH domain
KH_1	PF00013	392 - 458	8.1e-15	KH domain
KH_1	PF00013	579 - 642	4.7e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07030 AT3G07030 AT3G07030 AT3G07030 AT3G07030
fragaria_vesca	FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_2g19311 FvH4_6g37350
malus_domestica	MD05G1178300.v1.1 MD10G1166400.v1.1
prunus_persica	Prupe.8G204800_v2.0.a1 Prupe.8G204800_v2.0.a1
pyrus_communis	pycom10g14350
rosa_chinensis	RchiOBHm_Chr6g0285131
rosa_laevigata	RLG00000012670
rosa_roxburghii	Rroxscaffold_7G00183640 Rroxscaffold_7G00184010
rosa_rugosa	Rorug06G0171400 Rorug06G0171400 Rorug06G0171400 Rorug06G0171500 Rorug06G0171600 Rorug06G0171600 Rorug06G0171700 Rorug06G0171800 Rorug06G0171800 Rorug06G0171900 Rorug06G0172000
rosa_samantha	Rh6AG282500 Rh6BG283300 Rh6CG285100
rosa_wichuraiana	Rw6G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	475
Acc65I	GGTACC	1 cut(s)	1259
AccB1I	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
AccBSI	CCGCTC	1 cut(s)	130
AccI	GTMKAC	2 cut(s)	1267, 1540
AccII	CGCG	2 cut(s)	112, 1177
AclWI	GGATC	8 cut(s)	84, 97, 866, 1015, 1475, 1488, 1575, 1701
AcoI	YGGCCR	3 cut(s)	145, 661, 1014
AcuI	CTGAAG	2 cut(s)	807, 956
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	1261, 1326, 1367
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
AgeI	ACCGGT	1 cut(s)	1940
AgsI	TTSAA	5 cut(s)	39, 565, 671, 1133, 1347
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	4 cut(s)	104, 1287, 1852, 1902
AloI	GAACNNNNNNTCC	2 cut(s)	1420, 1452
AluBI	AGCT	5 cut(s)	78, 226, 807, 1152, 1770
AluI	AGCT	5 cut(s)	78, 226, 807, 1152, 1770
Alw21I	GWGCWC	2 cut(s)	339, 1154
Alw26I	GTCTC	8 cut(s)	339, 416, 533, 661, 716, 974, 1538, 1804
AlwI	GGATC	8 cut(s)	84, 97, 866, 1015, 1475, 1488, 1575, 1701
AlwNI	CAGNNNCTG	1 cut(s)	1658
Ama87I	CYCGRG	1 cut(s)	1147
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	8 cut(s)	107, 145, 234, 661, 713, 1014, 1065, 1613
ApeKI	GCWGC	5 cut(s)	118, 223, 587, 804, 1907
AseI	ATTAAT	1 cut(s)	1034
AsiGI	ACCGGT	1 cut(s)	1940
Asp718I	GGTACC	1 cut(s)	1259
AspLEI	GCGC	9 cut(s)	102, 114, 245, 317, 373, 382, 484, 1177, 1179
AspS9I	GGNCC	5 cut(s)	286, 324, 1066, 1291, 1943
AsuC2I	CCSGG	2 cut(s)	144, 290
AsuHPI	GGTGA	7 cut(s)	508, 672, 755, 1155, 1295, 1599, 1930
AvaI	CYCGRG	1 cut(s)	1147
AvaII	GGWCC	4 cut(s)	286, 324, 1291, 1943
AxyI	CCTNAGG	1 cut(s)	1062
BamHI	GGATCC	2 cut(s)	89, 1480
BanI	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
BanII	GRGCYC	3 cut(s)	75, 970, 1154
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	3 cut(s)	659, 1096, 1477
Bbv12I	GWGCWC	2 cut(s)	339, 1154
BbvI	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
BccI	CCATC	4 cut(s)	598, 847, 1624, 1727
BceAI	ACGGC	3 cut(s)	495, 648, 1427
BciT130I	CCWGG	4 cut(s)	106, 1289, 1854, 1904
BcnI	CCSGG	2 cut(s)	144, 290
BcoDI	GTCTC	8 cut(s)	339, 416, 533, 661, 716, 974, 1538, 1804
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	2 cut(s)	1116, 1737
BfoI	RGCGCY	2 cut(s)	103, 383
BfuAI	ACCTGC	1 cut(s)	475
Bme1390I	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
Bme18I	GGWCC	4 cut(s)	286, 324, 1291, 1943
BmeT110I	CYCGRG	1 cut(s)	1147
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	5 cut(s)	286, 324, 1066, 1291, 1943
BmrFI	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
BmsI	GCATC	4 cut(s)	192, 1058, 1348, 1631
BpiI	GAAGAC	3 cut(s)	659, 1096, 1477
BpmI	CTGGAG	3 cut(s)	88, 212, 869
BpuEI	CTTGAG	1 cut(s)	1093
BpuMI	CCSGG	2 cut(s)	144, 290
Bsa29I	ATCGAT	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	3 cut(s)	339, 416, 1538
BsaJI	CCNNGG	6 cut(s)	366, 1610, 1616, 1640, 1827, 1902
BsaWI	WCCGGW	4 cut(s)	321, 425, 1820, 1940
Bsc4I	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
Bse118I	RCCGGY	3 cut(s)	239, 462, 1940
Bse1I	ACTGG	9 cut(s)	547, 683, 709, 988, 1261, 1263, 1381, 1458, 1663
Bse21I	CCTNAGG	1 cut(s)	1062
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	4 cut(s)	106, 1289, 1854, 1904
BseCI	ATCGAT	1 cut(s)	842
BseDI	CCNNGG	6 cut(s)	366, 1610, 1616, 1640, 1827, 1902
BseGI	GGATG	2 cut(s)	705, 1597
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
BseMII	CTCAG	7 cut(s)	352, 795, 1053, 1489, 1665, 1785, 1799
BseNI	ACTGG	9 cut(s)	547, 683, 709, 988, 1261, 1263, 1381, 1458, 1663
BsePI	GCGCGC	1 cut(s)	1175
BseRI	GAGGAG	3 cut(s)	49, 275, 1910
BseX3I	CGGCCG	1 cut(s)	661
BseXI	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
BseYI	CCCAGC	3 cut(s)	74, 311, 1213
Bsh1236I	CGCG	2 cut(s)	112, 1177
Bsh1285I	CGRYCG	2 cut(s)	664, 1540
BshFI	GGCC	8 cut(s)	109, 147, 236, 663, 715, 1016, 1067, 1615
BshNI	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
BshTI	ACCGGT	1 cut(s)	1940
BshVI	ATCGAT	1 cut(s)	842
BsiEI	CGRYCG	2 cut(s)	664, 1540
BsiHKAI	GWGCWC	2 cut(s)	339, 1154
BsiHKCI	CYCGRG	1 cut(s)	1147
BslFI	GGGAC	4 cut(s)	490, 1172, 1277, 1900
BslI	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
BsmAI	GTCTC	8 cut(s)	339, 416, 533, 661, 716, 974, 1538, 1804
BsmFI	GGGAC	4 cut(s)	490, 1172, 1277, 1900
BsmI	GAATGC	1 cut(s)	1928
BsnI	GGCC	8 cut(s)	109, 147, 236, 663, 715, 1016, 1067, 1615
Bso31I	GGTCTC	3 cut(s)	339, 416, 1538
BsoBI	CYCGRG	1 cut(s)	1147
Bsp1286I	GDGCHC	4 cut(s)	75, 339, 970, 1154
Bsp1407I	TGTACA	2 cut(s)	1324, 1365
Bsp143I	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
Bsp19I	CCATGG	1 cut(s)	1616
BspANI	GGCC	8 cut(s)	109, 147, 236, 663, 715, 1016, 1067, 1615
BspCNI	CTCAG	7 cut(s)	351, 794, 1054, 1488, 1664, 1784, 1800
BspDI	ATCGAT	1 cut(s)	842
BspFNI	CGCG	2 cut(s)	112, 1177
BspHI	TCATGA	1 cut(s)	1949
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	8 cut(s)	84, 97, 866, 1015, 1475, 1488, 1575, 1701
BspQI	GCTCTTC	1 cut(s)	975
BspT107I	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
BspTNI	GGTCTC	3 cut(s)	339, 416, 1538
BsrBI	CCGCTC	1 cut(s)	130
BsrFI	RCCGGY	3 cut(s)	239, 462, 1940
BsrGI	TGTACA	2 cut(s)	1324, 1365
BsrI	ACTGG	9 cut(s)	547, 683, 709, 988, 1261, 1263, 1381, 1458, 1663
BssAI	RCCGGY	3 cut(s)	239, 462, 1940
BssECI	CCNNGG	6 cut(s)	366, 1610, 1616, 1640, 1827, 1902
BssHII	GCGCGC	1 cut(s)	1175
BssMI	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
BssNAI	GTATAC	1 cut(s)	1268
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
Bst1107I	GTATAC	1 cut(s)	1268
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	4 cut(s)	106, 1289, 1854, 1904
Bst4CI	ACNGT	6 cut(s)	136, 214, 727, 1042, 1411, 1738
Bst6I	CTCTTC	2 cut(s)	67, 975
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	168, 650
BstAUI	TGTACA	2 cut(s)	1324, 1365
BstC8I	GCNNGC	8 cut(s)	116, 123, 164, 234, 1069, 1080, 1126, 1177
BstDEI	CTNAG	9 cut(s)	79, 338, 781, 1062, 1306, 1475, 1651, 1771, 1808
BstDSI	CCRYGG	1 cut(s)	1616
BstEII	GGTNACC	2 cut(s)	1161, 1283
BstF5I	GGATG	2 cut(s)	705, 1597
BstFNI	CGCG	2 cut(s)	112, 1177
BstH2I	RGCGCY	2 cut(s)	103, 383
BstHHI	GCGC	9 cut(s)	102, 114, 245, 317, 373, 382, 484, 1177, 1179
BstKTI	GATC	9 cut(s)	92, 252, 763, 861, 1010, 1483, 1570, 1597, 1696
BstMAI	GTCTC	8 cut(s)	339, 416, 533, 661, 716, 974, 1538, 1804
BstMBI	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
BstMCI	CGRYCG	2 cut(s)	664, 1540
BstNI	CCWGG	4 cut(s)	106, 1289, 1854, 1904
BstNSI	RCATGY	1 cut(s)	166
BstPI	GGTNACC	2 cut(s)	1161, 1283
BstSCI	CCNGG	6 cut(s)	104, 142, 288, 1287, 1852, 1902
BstSFI	CTRYAG	2 cut(s)	1116, 1737
BstUI	CGCG	2 cut(s)	112, 1177
BstV1I	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
BstV2I	GAAGAC	3 cut(s)	659, 1096, 1477
BstX2I	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
BstXI	CCANNNNNNTGG	1 cut(s)	1617
BstYI	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
BstZ17I	GTATAC	1 cut(s)	1268
BstZI	CGGCCG	1 cut(s)	661
Bsu15I	ATCGAT	1 cut(s)	842
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuRI	GGCC	8 cut(s)	109, 147, 236, 663, 715, 1016, 1067, 1615
BsuTUI	ATCGAT	1 cut(s)	842
BtgI	CCRYGG	1 cut(s)	1616
BtgZI	GCGATG	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	705, 1597
BtsI	GCAGTG	1 cut(s)	1708
BtsIMutI	CAGTG	5 cut(s)	132, 346, 789, 1708, 1779
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	8 cut(s)	116, 123, 164, 234, 1069, 1080, 1126, 1177
CaiI	CAGNNNCTG	1 cut(s)	1658
CciI	TCATGA	1 cut(s)	1949
CfoI	GCGC	9 cut(s)	102, 114, 245, 317, 373, 382, 484, 1177, 1179
Cfr10I	RCCGGY	3 cut(s)	239, 462, 1940
Cfr13I	GGNCC	5 cut(s)	286, 324, 1066, 1291, 1943
ClaI	ATCGAT	1 cut(s)	842
CpoI	CGGWCCG	1 cut(s)	286
CseI	GACGC	1 cut(s)	181
CsiI	ACCWGGT	1 cut(s)	1287
Csp6I	GTAC	3 cut(s)	1260, 1325, 1366
CspAI	ACCGGT	1 cut(s)	1940
CspI	CGGWCCG	1 cut(s)	286
CviAII	CATG	6 cut(s)	163, 811, 1529, 1617, 1841, 1950
CviQI	GTAC	3 cut(s)	1260, 1325, 1366
DdeI	CTNAG	9 cut(s)	79, 338, 781, 1062, 1306, 1475, 1651, 1771, 1808
DpnI	GATC	9 cut(s)	91, 251, 762, 860, 1009, 1482, 1569, 1596, 1695
DpnII	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	3 cut(s)	145, 661, 1014
EagI	CGGCCG	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	67, 975
EarI	CTCTTC	2 cut(s)	67, 975
EciI	GGCGGA	2 cut(s)	434, 825
Ecl136II	GAGCTC	1 cut(s)	1152
EclXI	CGGCCG	1 cut(s)	661
Eco130I	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
Eco147I	AGGCCT	1 cut(s)	715
Eco24I	GRGCYC	3 cut(s)	75, 970, 1154
Eco31I	GGTCTC	3 cut(s)	339, 416, 1538
Eco47I	GGWCC	4 cut(s)	286, 324, 1291, 1943
Eco47III	AGCGCT	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	1152
Eco57I	CTGAAG	2 cut(s)	807, 956
Eco81I	CCTNAGG	1 cut(s)	1062
Eco88I	CYCGRG	1 cut(s)	1147
Eco91I	GGTNACC	2 cut(s)	1161, 1283
EcoICRI	GAGCTC	1 cut(s)	1152
EcoO109I	RGGNCCY	1 cut(s)	1291
EcoO65I	GGTNACC	2 cut(s)	1161, 1283
EcoRII	CCWGG	4 cut(s)	104, 1287, 1852, 1902
EcoT14I	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
EcoT38I	GRGCYC	3 cut(s)	75, 970, 1154
ErhI	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
FaeI	CATG	6 cut(s)	166, 814, 1532, 1620, 1844, 1953
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 1289, 1321
FaqI	GGGAC	4 cut(s)	490, 1172, 1277, 1900
FatI	CATG	6 cut(s)	162, 810, 1528, 1616, 1840, 1949
FauI	CCCGC	4 cut(s)	188, 466, 1076, 1117
FblI	GTMKAC	2 cut(s)	1267, 1540
FokI	GGATG	2 cut(s)	712, 1584
FriOI	GRGCYC	3 cut(s)	75, 970, 1154
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	9 cut(s)	101, 113, 244, 316, 372, 381, 483, 1176, 1178
GsaI	CCCAGC	3 cut(s)	78, 315, 1217
GsuI	CTGGAG	3 cut(s)	88, 212, 869
HaeII	RGCGCY	2 cut(s)	103, 383
HaeIII	GGCC	8 cut(s)	109, 147, 236, 663, 715, 1016, 1067, 1615
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	9 cut(s)	102, 114, 245, 317, 373, 382, 484, 1177, 1179
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	6 cut(s)	166, 814, 1532, 1620, 1844, 1953
Hin6I	GCGC	9 cut(s)	100, 112, 243, 315, 371, 380, 482, 1175, 1177
HinP1I	GCGC	9 cut(s)	100, 112, 243, 315, 371, 380, 482, 1175, 1177
HincII	GTYRAC	2 cut(s)	688, 1541
HindII	GTYRAC	2 cut(s)	688, 1541
HinfI	GANTC	9 cut(s)	255, 278, 403, 907, 1057, 1145, 1243, 1473, 1647
HphI	GGTGA	7 cut(s)	508, 672, 755, 1155, 1295, 1599, 1930
Hpy166II	GTNNAC	4 cut(s)	680, 688, 1268, 1541
Hpy188I	TCNGA	9 cut(s)	70, 254, 598, 975, 1054, 1240, 1248, 1654, 1693
Hpy8I	GTNNAC	4 cut(s)	680, 688, 1268, 1541
Hpy99I	CGWCG	3 cut(s)	155, 299, 302
HpyAV	CCTTC	7 cut(s)	166, 603, 611, 1243, 1419, 1515, 1611
HpyCH4III	ACNGT	6 cut(s)	136, 214, 727, 1042, 1411, 1738
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	1049, 1354, 1840
HpyF3I	CTNAG	9 cut(s)	79, 338, 781, 1062, 1306, 1475, 1651, 1771, 1808
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	6 cut(s)	166, 814, 1532, 1620, 1844, 1953
HspAI	GCGC	9 cut(s)	100, 112, 243, 315, 371, 380, 482, 1175, 1177
KpnI	GGTACC	1 cut(s)	1263
Kzo9I	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
LguI	GCTCTTC	1 cut(s)	975
Lsp1109I	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
LweI	GCATC	4 cut(s)	192, 1058, 1348, 1631
MabI	ACCWGGT	1 cut(s)	1287
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	8 cut(s)	895, 1042, 1161, 1252, 1283, 1383, 1522, 1723
MalI	GATC	9 cut(s)	91, 251, 762, 860, 1009, 1482, 1569, 1596, 1695
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
MboII	GAAGA	9 cut(s)	36, 54, 538, 659, 962, 1096, 1482, 1500, 1596
MflI	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
MhlI	GDGCHC	4 cut(s)	75, 339, 970, 1154
MluCI	AATT	8 cut(s)	39, 552, 572, 793, 1035, 1417, 1588, 1795
MlyI	GAGTC	3 cut(s)	272, 1139, 1467
MmeI	TCCRAC	3 cut(s)	427, 982, 1428
MseI	TTAA	2 cut(s)	903, 1034
MspR9I	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
Mva1269I	GAATGC	1 cut(s)	1928
MvaI	CCWGG	4 cut(s)	106, 1289, 1854, 1904
MvnI	CGCG	2 cut(s)	112, 1177
NciI	CCSGG	2 cut(s)	144, 290
NcoI	CCATGG	1 cut(s)	1616
NdeII	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
NlaIII	CATG	6 cut(s)	166, 814, 1532, 1620, 1844, 1953
NmeAIII	GCCGAG	2 cut(s)	825, 1042
NmuCI	GTSAC	3 cut(s)	1161, 1283, 1723
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	1147
PagI	TCATGA	1 cut(s)	1949
PauI	GCGCGC	1 cut(s)	1175
PceI	AGGCCT	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	975
PctI	GAATGC	1 cut(s)	1928
PfeI	GAWTC	6 cut(s)	255, 403, 907, 1057, 1243, 1647
PflFI	GACNNNGTC	3 cut(s)	52, 290, 1289
PfoI	TCCNGGA	1 cut(s)	1852
PinAI	ACCGGT	1 cut(s)	1940
PleI	GAGTC	3 cut(s)	272, 1139, 1467
PpsI	GAGTC	3 cut(s)	272, 1139, 1467
PpuMI	RGGWCCY	1 cut(s)	1291
PshBI	ATTAAT	1 cut(s)	1034
Psp124BI	GAGCTC	1 cut(s)	1154
Psp5II	RGGWCCY	1 cut(s)	1291
Psp6I	CCWGG	4 cut(s)	104, 1287, 1852, 1902
PspEI	GGTNACC	2 cut(s)	1161, 1283
PspFI	CCCAGC	3 cut(s)	74, 311, 1213
PspGI	CCWGG	4 cut(s)	104, 1287, 1852, 1902
PspPI	GGNCC	5 cut(s)	286, 324, 1066, 1291, 1943
PspPPI	RGGWCCY	1 cut(s)	1291
PspXI	VCTCGAGB	1 cut(s)	1147
PstNI	CAGNNNCTG	1 cut(s)	1658
PsuI	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
PsyI	GACNNNGTC	3 cut(s)	52, 290, 1289
PteI	GCGCGC	1 cut(s)	1175
RsaI	GTAC	3 cut(s)	1261, 1326, 1367
RsaNI	GTAC	3 cut(s)	1260, 1325, 1366
Rsr2I	CGGWCCG	1 cut(s)	286
RsrII	CGGWCCG	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	1154
SalI	GTCGAC	1 cut(s)	1539
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	2 cut(s)	903, 1034
Sau3AI	GATC	9 cut(s)	89, 249, 760, 858, 1007, 1480, 1567, 1594, 1693
Sau96I	GGNCC	5 cut(s)	286, 324, 1066, 1291, 1943
SchI	GAGTC	3 cut(s)	272, 1139, 1467
ScrFI	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
SduI	GDGCHC	4 cut(s)	75, 339, 970, 1154
SexAI	ACCWGGT	1 cut(s)	1287
SfaNI	GCATC	4 cut(s)	192, 1058, 1348, 1631
SfcI	CTRYAG	2 cut(s)	1116, 1737
Sfr274I	CTCGAG	1 cut(s)	1147
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	4 cut(s)	286, 324, 1291, 1943
SlaI	CTCGAG	1 cut(s)	1147
SmlI	CTYRAG	2 cut(s)	1108, 1147
SmoI	CTYRAG	2 cut(s)	1108, 1147
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	8 cut(s)	39, 552, 572, 793, 1035, 1417, 1588, 1795
SseBI	AGGCCT	1 cut(s)	715
SspI	AATATT	1 cut(s)	1372
SspMI	CTAG	1 cut(s)	407
SstI	GAGCTC	1 cut(s)	1154
StuI	AGGCCT	1 cut(s)	715
StyD4I	CCNGG	6 cut(s)	104, 142, 288, 1287, 1852, 1902
StyI	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
TaaI	ACNGT	6 cut(s)	136, 214, 727, 1042, 1411, 1738
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	8 cut(s)	47, 258, 276, 396, 842, 1148, 1540, 1804
TaqII	GACCGA	1 cut(s)	1526
TasI	AATT	8 cut(s)	39, 552, 572, 793, 1035, 1417, 1588, 1795
TatI	WGTACW	2 cut(s)	1324, 1365
TauI	GCSGC	5 cut(s)	112, 192, 268, 419, 513
TfiI	GAWTC	6 cut(s)	255, 403, 907, 1057, 1243, 1647
Tru1I	TTAA	2 cut(s)	903, 1034
Tru9I	TTAA	2 cut(s)	903, 1034
TscAI	CASTG	5 cut(s)	139, 346, 789, 1708, 1779
TseFI	GTSAC	3 cut(s)	1161, 1283, 1723
TseI	GCWGC	5 cut(s)	118, 223, 587, 804, 1907
Tsp45I	GTSAC	3 cut(s)	1161, 1283, 1723
TspDTI	ATGAA	4 cut(s)	1041, 1500, 1857, 1921
TspGWI	ACGGA	2 cut(s)	102, 1285
TspRI	CASTG	5 cut(s)	139, 346, 789, 1708, 1779
Tth111I	GACNNNGTC	3 cut(s)	52, 290, 1289
VpaK11BI	GGWCC	4 cut(s)	286, 324, 1291, 1943
VspI	ATTAAT	1 cut(s)	1034
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	1147
XmiI	GTMKAC	2 cut(s)	1267, 1540
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.