Rroxscaffold_7G00184010

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003504
Physical Location & Seq
Forward (+)
23176653 .. 23179870
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184010.1

Sequence Viewer

Length: 855 bp
ATGGAAAGCTACCGGAGAGTCGAGAAGCCGAAGCCCGGAGCTCCCAATCAGCGAGAACGAGATCCGAATCACCACCCAGGGCGCCATCAGAAACTACATCAGCTATGCCACCACTCAGCTCCAGGAGCTTTTTCCCTCTCCTTTTGTTATACAAAGATTCAATTGGTTGATAAACAAGTCAATGAAATTGTCTTGAAAGCAATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGGGTTCCAATGTTGCATCAAGATACTGCCATCAGCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTTGTGGAGATGACTCGCATGTGTCAATGATTTCAATTACTCTATCAACTAAGGAGTTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGGTGATGCCATTGACAACTTATCAACTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCCAATCGTGGTTCTGGTAGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGGGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCGAACCAGGCATAACTCACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

284

Amino Acids

30.71

Weight (kDa)

6.01

Isoelectric Point (pI)

25.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 50 - 97 1.7e-10 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 81, 677, 719
AciI CCGC 1 cut(s) 404
AclWI GGATC 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 744
AfiI CCNNNNNNNGG 4 cut(s) 35, 562, 602, 641
AgsI TTSAA 3 cut(s) 161, 196, 366
AjnI CCWGG 3 cut(s) 76, 121, 836
AluBI AGCT 8 cut(s) 9, 41, 103, 119, 128, 288, 416, 479
AluI AGCT 8 cut(s) 9, 41, 103, 119, 128, 288, 416, 479
Alw21I GWGCWC 1 cut(s) 43
AlwI GGATC 1 cut(s) 56
AoxI GGCC 1 cut(s) 592
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 3 cut(s) 485, 593, 632
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 62, 521
AvaII GGWCC 2 cut(s) 485, 632
BanI GGYRCC 3 cut(s) 81, 677, 719
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 43
BccI CCATC 4 cut(s) 93, 290, 427, 801
BciT130I CCWGG 3 cut(s) 78, 123, 838
BciVI GTATCC 1 cut(s) 563
BcnI CCSGG 1 cut(s) 36
BfaI CTAG 2 cut(s) 428, 821
BfoI RGCGCY 1 cut(s) 85
BfuI GTATCC 1 cut(s) 563
Bme1390I CCNGG 4 cut(s) 36, 78, 123, 838
Bme18I GGWCC 2 cut(s) 485, 632
BmgT120I GGNCC 3 cut(s) 485, 593, 632
BmiI GGNNCC 6 cut(s) 83, 258, 315, 595, 679, 721
BmrFI CCNGG 4 cut(s) 36, 78, 123, 838
BmsI GCATC 2 cut(s) 277, 502
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 76, 77
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 562, 602, 641
Bse118I RCCGGY 2 cut(s) 680, 722
Bse1I ACTGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 3 cut(s) 78, 123, 838
BseDI CCNNGG 2 cut(s) 76, 77
BseGI GGATG 1 cut(s) 812
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 4 cut(s) 35, 562, 602, 641
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 750
BseRI GAGGAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 594
BshNI GGYRCC 3 cut(s) 81, 677, 719
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 4 cut(s) 13, 36, 681, 723
BslFI GGGAC 2 cut(s) 219, 815
BslI CCNNNNNNNGG 4 cut(s) 35, 562, 602, 641
BsmFI GGGAC 2 cut(s) 219, 815
BsnI GGCC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 1 cut(s) 128
BspLI GGNNCC 6 cut(s) 83, 258, 315, 595, 679, 721
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 3 cut(s) 81, 677, 719
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 680, 722
BsrI ACTGG 1 cut(s) 750
BssAI RCCGGY 2 cut(s) 680, 722
BssECI CCNNGG 2 cut(s) 76, 77
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 82
BssSI CACGAG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 3 cut(s) 78, 123, 838
Bst4CI ACNGT 2 cut(s) 226, 852
Bst6I CTCTTC 2 cut(s) 245, 561
BstACI GRCGYC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 115, 381
BstF5I GGATG 1 cut(s) 812
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 125, 294, 838
BstNI CCWGG 3 cut(s) 78, 123, 838
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 4 cut(s) 34, 76, 121, 836
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 1 cut(s) 594
BtsCI GGATG 1 cut(s) 812
BtsIMutI CAGTG 1 cut(s) 231
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 2 cut(s) 680, 722
Cfr13I GGNCC 3 cut(s) 485, 593, 632
CseI GACGC 1 cut(s) 824
Csp6I GTAC 1 cut(s) 743
CviAII CATG 1 cut(s) 350
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 2 cut(s) 115, 381
DinI GGCGCC 1 cut(s) 83
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 245, 561
EarI CTCTTC 2 cut(s) 245, 561
Ecl136II GAGCTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 410
Eco47I GGWCC 2 cut(s) 485, 632
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 632
EcoRII CCWGG 3 cut(s) 76, 121, 836
EcoRV GATATC 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 43
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
FaeI CATG 1 cut(s) 353
FaqI GGGAC 2 cut(s) 219, 815
FatI CATG 1 cut(s) 349
FauI CCCGC 1 cut(s) 397
FokI GGATG 1 cut(s) 819
FriOI GRGCYC 1 cut(s) 43
FspBI CTAG 2 cut(s) 428, 821
GlaI GCGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 594
HapII CCGG 4 cut(s) 13, 36, 681, 723
HgaI GACGC 1 cut(s) 824
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 353
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 4 cut(s) 18, 67, 157, 344
HpaII CCGG 4 cut(s) 13, 36, 681, 723
HphI GGTGA 2 cut(s) 62, 521
Hpy166II GTNNAC 2 cut(s) 577, 814
Hpy188I TCNGA 2 cut(s) 66, 90
Hpy188III TCNNGA 5 cut(s) 22, 193, 272, 538, 630
Hpy8I GTNNAC 2 cut(s) 577, 814
HpyAV CCTTC 2 cut(s) 500, 645
HpyCH4III ACNGT 2 cut(s) 226, 852
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 294, 838
HpyF3I CTNAG 2 cut(s) 115, 381
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 353
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 5 cut(s) 38, 46, 124, 125, 421
LweI GCATC 2 cut(s) 277, 502
MaeI CTAG 2 cut(s) 428, 821
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 262, 578
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 4 cut(s) 161, 186, 366, 451
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 2 cut(s) 27, 338
MseI TTAA 1 cut(s) 389
MspI CCGG 4 cut(s) 13, 36, 681, 723
MspR9I CCNGG 4 cut(s) 36, 78, 123, 838
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 3 cut(s) 78, 123, 838
MwoI GCNNNNNNNGC 3 cut(s) 125, 294, 838
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 6 cut(s) 83, 258, 315, 595, 679, 721
NspI RCATGY 1 cut(s) 353
PasI CCCWGGG 1 cut(s) 77
PfeI GAWTC 2 cut(s) 67, 157
PfoI TCCNGGA 1 cut(s) 121
PleI GAGTC 2 cut(s) 26, 338
PluTI GGCGCC 1 cut(s) 85
PpsI GAGTC 2 cut(s) 26, 338
PpuMI RGGWCCY 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 3 cut(s) 76, 121, 836
PspGI CCWGG 3 cut(s) 76, 121, 836
PspN4I GGNNCC 6 cut(s) 83, 258, 315, 595, 679, 721
PspPI GGNCC 3 cut(s) 485, 593, 632
PspPPI RGGWCCY 1 cut(s) 632
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 3 cut(s) 485, 593, 632
SchI GAGTC 2 cut(s) 27, 338
ScrFI CCNGG 4 cut(s) 36, 78, 123, 838
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 2 cut(s) 277, 502
SfoI GGCGCC 1 cut(s) 83
SinI GGWCC 2 cut(s) 485, 632
Sse9I AATT 4 cut(s) 161, 186, 366, 451
SsiI CCGC 1 cut(s) 404
SspDI GGCGCC 1 cut(s) 81
SspMI CTAG 2 cut(s) 428, 821
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 4 cut(s) 34, 76, 121, 836
TaaI ACNGT 2 cut(s) 226, 852
TaqI TCGA 1 cut(s) 21
TasI AATT 4 cut(s) 161, 186, 366, 451
TfiI GAWTC 2 cut(s) 67, 157
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 231
TspDTI ATGAA 9 cut(s) 198, 519, 633, 663, 684, 705, 726, 747, 770
TspGWI ACGGA 1 cut(s) 819
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 2 cut(s) 485, 632
XceI RCATGY 1 cut(s) 353
XspI CTAG 2 cut(s) 428, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.