Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327663.1

Orthogroup ID

OG0006858

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 966

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327663.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 965 bp

cccctggttcttcctctacggcatccacaacacctcctccaagaacaaccagtccttcgccttcgaccctctctccaaccgctggctccgcctgcccacccccaccttccctccccaccactactcccactcctgcttcctcggcgccgacggcttcttcctcatcaccgcccccaacttcacctactccagaatcctcaagcgctcttggcgctccacctcgcctctccacttctcccgcatcaaccctcttctcggcgtcttcgactccggctctctcctccccaacttcatcgtcgtcggcggtgtcagattcatcggcaacttggtcgacatcgaggaccgcttggccgtcgagatctacacccccgactccgattcctggcagctcggtcctcctctccctgctgatttcagatccggcaattcctcccagtccttgtcatccgccctcttcaaagggcggttctacgtcttcggcatctattcctgcttcatttcatcttttgacctacacaccaacgcctggagccaagtccagactctccggccgcctggagttgtcttctctttcttgattggctgccgggacaggcttgttctggccggaatctgcaacgggcctctcggatcctcctttaatctgtggagtatcgaggaggccaccatggagttcagtgagattgcaatcatgcctcaggacttgctgtgtagcttgtttgagggggatgaggaggataagtttgcgagcttgaaatgtgtgggcttgggaaatcttatatacgtgtttaatgaagagtaccataagaagtacccggcttgtgtttgcgagattagcagtgagactccgcagtgcagctggaggagagtgcctcccttgccttcacctgtgaataagtttcaccaagttataagcttttgttccacggtttcgctcaatactattcttcagcctgaggaagagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

321

Amino Acids

36.12

Weight (kDa)

5.77

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24760 AT3G24760
fragaria_vesca	FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330
malus_domestica	MD05G1178400.v1.1
prunus_persica	Prupe.8G204900_v2.0.a1 Prupe.8G204900_v2.0.a1
pyrus_communis	pycom10g14360
rosa_chinensis	RchiOBHm_Chr6g0285141
rosa_laevigata	RLG00000012669
rosa_multiflora	Rmu_co8327663.1_g000001 Rmu_sc0002535.1_g000018 Rmu_sc0012068.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183630 Rroxscaffold_7G00184000
rosa_rugosa	Rorug06G0172000 Rorug06G0172100 Rorug06G0172100
rosa_samantha	Rh6BG283400 Rh6CG285200 Rh6DG278300
rosa_wichuraiana	Rw6G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	144
AccB7I	CCANNNNNTGG	2 cut(s)	82, 526
AccI	GTMKAC	1 cut(s)	331
AclWI	GGATC	3 cut(s)	412, 625, 638
AcoI	YGGCCR	3 cut(s)	349, 549, 604
AcuI	CTGAAG	1 cut(s)	933
AcyI	GRCGYC	2 cut(s)	145, 259
AfaI	GTAC	2 cut(s)	801, 813
AfeI	AGCGCT	1 cut(s)	204
AfiI	CCNNNNNNNGG	4 cut(s)	82, 255, 382, 526
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	2 cut(s)	458, 755
AjnI	CCWGG	4 cut(s)	3, 381, 525, 554
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	5 cut(s)	389, 715, 751, 859, 916
AluI	AGCT	5 cut(s)	389, 715, 751, 859, 916
Alw26I	GTCTC	1 cut(s)	837
AlwI	GGATC	3 cut(s)	412, 625, 638
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	5 cut(s)	349, 549, 604, 621, 661
ApeKI	GCWGC	3 cut(s)	386, 583, 856
AspLEI	GCGC	3 cut(s)	147, 205, 214
AspS9I	GGNCC	3 cut(s)	341, 393, 621
AsuC2I	CCSGG	2 cut(s)	588, 816
AsuHPI	GGTGA	4 cut(s)	158, 173, 877, 894
AvaII	GGWCC	2 cut(s)	341, 393
AxyI	CCTNAGG	2 cut(s)	697, 955
BamHI	GGATCC	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	144
BbsI	GAAGAC	3 cut(s)	254, 467, 557
BbvI	GCAGC	3 cut(s)	398, 570, 868
BceAI	ACGGC	3 cut(s)	35, 167, 336
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	4 cut(s)	5, 383, 527, 556
BcnI	CCSGG	2 cut(s)	588, 816
BcoDI	GTCTC	1 cut(s)	837
BfoI	RGCGCY	3 cut(s)	148, 206, 215
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	4 cut(s)	387, 552, 584, 857
BlsI	GCNGC	4 cut(s)	388, 553, 585, 858
Bme1390I	CCNGG	6 cut(s)	5, 383, 527, 556, 588, 816
Bme18I	GGWCC	2 cut(s)	341, 393
BmgT120I	GGNCC	3 cut(s)	341, 393, 621
BmiI	GGNNCC	4 cut(s)	87, 146, 531, 632
BmrFI	CCNGG	6 cut(s)	5, 383, 527, 556, 588, 816
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	3 cut(s)	31, 250, 490
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	3 cut(s)	254, 467, 557
BplI	GAGNNNNNCTC	2 cut(s)	857, 889
BpmI	CTGGAG	4 cut(s)	173, 548, 577, 881
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	588, 816
BsaAI	YACGTR	1 cut(s)	785
BsaBI	GATNNNNATC	1 cut(s)	687
BsaHI	GRCGYC	2 cut(s)	145, 259
BsaJI	CCNNGG	4 cut(s)	3, 140, 667, 925
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 255, 382, 526
Bse1I	ACTGG	2 cut(s)	50, 434
Bse21I	CCTNAGG	2 cut(s)	697, 955
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	4 cut(s)	5, 383, 527, 556
BseDI	CCNNGG	4 cut(s)	3, 140, 667, 925
BseGI	GGATG	3 cut(s)	22, 444, 734
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	4 cut(s)	82, 255, 382, 526
BseMII	CTCAG	2 cut(s)	711, 946
BseNI	ACTGG	2 cut(s)	50, 434
BseRI	GAGGAG	6 cut(s)	26, 270, 388, 672, 747, 878
BseX3I	CGGCCG	1 cut(s)	549
BseXI	GCAGC	3 cut(s)	398, 570, 868
BsgI	GTGCAG	1 cut(s)	875
Bsh1285I	CGRYCG	1 cut(s)	552
BshFI	GGCC	5 cut(s)	351, 551, 606, 623, 663
BshNI	GGYRCC	1 cut(s)	144
BsiEI	CGRYCG	1 cut(s)	552
BsiSI	CCGG	6 cut(s)	271, 421, 548, 587, 607, 816
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	4 cut(s)	82, 255, 382, 526
BsmAI	GTCTC	1 cut(s)	837
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	5 cut(s)	351, 551, 606, 623, 663
Bsp143I	GATC	3 cut(s)	358, 417, 630
Bsp19I	CCATGG	1 cut(s)	667
BspANI	GGCC	5 cut(s)	351, 551, 606, 623, 663
BspCNI	CTCAG	2 cut(s)	710, 947
BspLI	GGNNCC	4 cut(s)	87, 146, 531, 632
BspPI	GGATC	3 cut(s)	412, 625, 638
BspT107I	GGYRCC	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	50, 434
BssECI	CCNNGG	4 cut(s)	3, 140, 667, 925
BssMI	GATC	3 cut(s)	358, 417, 630
BssNI	GRCGYC	2 cut(s)	145, 259
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	4 cut(s)	5, 383, 527, 556
Bst4CI	ACNGT	1 cut(s)	929
Bst6I	CTCTTC	4 cut(s)	256, 459, 790, 955
BstACI	GRCGYC	2 cut(s)	145, 259
BstBAI	YACGTR	1 cut(s)	785
BstC8I	GCNNGC	3 cut(s)	84, 93, 749
BstDEI	CTNAG	2 cut(s)	697, 955
BstDSI	CCRYGG	2 cut(s)	667, 925
BstF5I	GGATG	3 cut(s)	22, 444, 734
BstH2I	RGCGCY	3 cut(s)	148, 206, 215
BstHHI	GCGC	3 cut(s)	147, 205, 214
BstKTI	GATC	3 cut(s)	361, 420, 633
BstMAI	GTCTC	1 cut(s)	837
BstMBI	GATC	3 cut(s)	358, 417, 630
BstMCI	CGRYCG	1 cut(s)	552
BstMWI	GCNNNNNNNGC	8 cut(s)	88, 92, 142, 151, 209, 211, 835, 878
BstNI	CCWGG	4 cut(s)	5, 383, 527, 556
BstSCI	CCNGG	6 cut(s)	3, 381, 525, 554, 586, 814
BstV1I	GCAGC	3 cut(s)	398, 570, 868
BstV2I	GAAGAC	3 cut(s)	254, 467, 557
BstX2I	RGATCY	3 cut(s)	358, 417, 630
BstYI	RGATCY	3 cut(s)	358, 417, 630
BstZI	CGGCCG	1 cut(s)	549
Bsu36I	CCTNAGG	2 cut(s)	697, 955
BsuRI	GGCC	5 cut(s)	351, 551, 606, 623, 663
BtgI	CCRYGG	2 cut(s)	667, 925
BtsCI	GGATG	3 cut(s)	22, 444, 734
BtsI	GCAGTG	2 cut(s)	845, 858
BtsIMutI	CAGTG	3 cut(s)	683, 845, 858
Cac8I	GCNNGC	3 cut(s)	84, 93, 749
CfoI	GCGC	3 cut(s)	147, 205, 214
Cfr13I	GGNCC	3 cut(s)	341, 393, 621
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	800, 812
CviAII	CATG	2 cut(s)	668, 692
CviQI	GTAC	2 cut(s)	800, 812
DdeI	CTNAG	2 cut(s)	697, 955
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	3 cut(s)	360, 419, 632
DpnII	GATC	3 cut(s)	358, 417, 630
EaeI	YGGCCR	3 cut(s)	349, 549, 604
EagI	CGGCCG	1 cut(s)	549
Eam1104I	CTCTTC	4 cut(s)	256, 459, 790, 955
EarI	CTCTTC	4 cut(s)	256, 459, 790, 955
EciI	GGCGGA	2 cut(s)	78, 437
EclXI	CGGCCG	1 cut(s)	549
Eco130I	CCWWGG	1 cut(s)	667
Eco47I	GGWCC	2 cut(s)	341, 393
Eco47III	AGCGCT	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	933
Eco81I	CCTNAGG	2 cut(s)	697, 955
EcoRII	CCWGG	4 cut(s)	3, 381, 525, 554
EcoT14I	CCWWGG	1 cut(s)	667
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	2 cut(s)	671, 695
FaiI	YATR	6 cut(s)	669, 693, 780, 782, 805, 912
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	2 cut(s)	667, 691
FauI	CCCGC	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	387, 552, 584, 857
FokI	GGATG	3 cut(s)	9, 431, 741
Fsp4HI	GCNGC	4 cut(s)	387, 552, 584, 857
GlaI	GCGC	3 cut(s)	146, 204, 213
GluI	GCNGC	4 cut(s)	387, 552, 584, 857
GsuI	CTGGAG	4 cut(s)	173, 548, 577, 881
HaeII	RGCGCY	3 cut(s)	148, 206, 215
HaeIII	GGCC	5 cut(s)	351, 551, 606, 623, 663
HapII	CCGG	6 cut(s)	271, 421, 548, 587, 607, 816
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	3 cut(s)	147, 205, 214
Hin1I	GRCGYC	2 cut(s)	145, 259
Hin1II	CATG	2 cut(s)	671, 695
Hin6I	GCGC	3 cut(s)	145, 203, 212
HinP1I	GCGC	3 cut(s)	145, 203, 212
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	8 cut(s)	193, 267, 313, 372, 378, 542, 610, 845
HpaII	CCGG	6 cut(s)	271, 421, 548, 587, 607, 816
HphI	GGTGA	4 cut(s)	158, 173, 877, 894
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	4 cut(s)	312, 377, 417, 630
Hpy188III	TCNNGA	5 cut(s)	190, 356, 539, 575, 699
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	4 cut(s)	153, 300, 303, 357
HpyAV	CCTTC	4 cut(s)	65, 71, 116, 892
HpyCH4III	ACNGT	1 cut(s)	929
HpyCH4IV	ACGT	2 cut(s)	472, 784
HpyCH4V	TGCA	3 cut(s)	616, 687, 856
HpyF10VI	GCNNNNNNNGC	8 cut(s)	88, 92, 142, 151, 209, 211, 835, 878
HpyF3I	CTNAG	2 cut(s)	697, 955
HpySE526I	ACGT	2 cut(s)	472, 784
Hsp92I	GRCGYC	2 cut(s)	145, 259
Hsp92II	CATG	2 cut(s)	671, 695
HspAI	GCGC	3 cut(s)	145, 203, 212
KasI	GGCGCC	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	358, 417, 630
LmnI	GCTCC	3 cut(s)	91, 219, 529
Lsp1109I	GCAGC	3 cut(s)	398, 570, 868
LweI	GCATC	3 cut(s)	31, 250, 490
MaeII	ACGT	2 cut(s)	472, 784
MalI	GATC	3 cut(s)	360, 419, 632
MboI	GATC	3 cut(s)	358, 417, 630
MboII	GAAGA	8 cut(s)	149, 243, 254, 446, 467, 557, 807, 939
MflI	RGATCY	3 cut(s)	358, 417, 630
MluCI	AATT	1 cut(s)	425
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	4 cut(s)	261, 366, 536, 839
MmeI	TCCRAC	1 cut(s)	100
MseI	TTAA	2 cut(s)	640, 790
MspA1I	CMGCKG	2 cut(s)	82, 859
MspI	CCGG	6 cut(s)	271, 421, 548, 587, 607, 816
MspR9I	CCNGG	6 cut(s)	5, 383, 527, 556, 588, 816
MvaI	CCWGG	4 cut(s)	5, 383, 527, 556
MwoI	GCNNNNNNNGC	8 cut(s)	88, 92, 142, 151, 209, 211, 835, 878
NarI	GGCGCC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	588, 816
NcoI	CCATGG	1 cut(s)	667
NdeII	GATC	3 cut(s)	358, 417, 630
NlaIII	CATG	2 cut(s)	671, 695
NlaIV	GGNNCC	4 cut(s)	87, 146, 531, 632
NmeAIII	GCCGAG	2 cut(s)	121, 235
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	193, 313, 378, 610
PflMI	CCANNNNNTGG	2 cut(s)	82, 526
PkrI	GCNGC	4 cut(s)	388, 553, 585, 858
PleI	GAGTC	4 cut(s)	261, 366, 536, 839
PluTI	GGCGCC	1 cut(s)	148
PpsI	GAGTC	4 cut(s)	261, 366, 536, 839
Ppu21I	YACGTR	1 cut(s)	785
PsiI	TTATAA	1 cut(s)	912
Psp6I	CCWGG	4 cut(s)	3, 381, 525, 554
PspGI	CCWGG	4 cut(s)	3, 381, 525, 554
PspN4I	GGNNCC	4 cut(s)	87, 146, 531, 632
PspPI	GGNCC	3 cut(s)	341, 393, 621
PsuI	RGATCY	3 cut(s)	358, 417, 630
PvuII	CAGCTG	1 cut(s)	859
RsaI	GTAC	2 cut(s)	801, 813
RsaNI	GTAC	2 cut(s)	800, 812
SalI	GTCGAC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	640, 790
SatI	GCNGC	4 cut(s)	387, 552, 584, 857
Sau3AI	GATC	3 cut(s)	358, 417, 630
Sau96I	GGNCC	3 cut(s)	341, 393, 621
SchI	GAGTC	4 cut(s)	261, 366, 536, 839
ScrFI	CCNGG	6 cut(s)	5, 383, 527, 556, 588, 816
SfaNI	GCATC	3 cut(s)	31, 250, 490
SfoI	GGCGCC	1 cut(s)	146
SinI	GGWCC	2 cut(s)	341, 393
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	425
SspDI	GGCGCC	1 cut(s)	144
StyD4I	CCNGG	6 cut(s)	3, 381, 525, 554, 586, 814
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	1 cut(s)	929
TaiI	ACGT	2 cut(s)	475, 787
TaqI	TCGA	6 cut(s)	64, 265, 331, 337, 355, 655
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	1 cut(s)	425
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	4 cut(s)	193, 313, 378, 610
Tru1I	TTAA	2 cut(s)	640, 790
Tru9I	TTAA	2 cut(s)	640, 790
TscAI	CASTG	3 cut(s)	683, 845, 858
TseI	GCWGC	3 cut(s)	386, 583, 856
TspDTI	ATGAA	5 cut(s)	281, 305, 485, 490, 808
TspRI	CASTG	3 cut(s)	683, 845, 858
Van91I	CCANNNNNTGG	2 cut(s)	82, 526
VpaK11BI	GGWCC	2 cut(s)	341, 393
XmiI	GTMKAC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.