MD05G1178400.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
30493353 .. 30496249
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1178400.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGCGGAAATCAGCTGCCTCAGCTCCGACGTGACGGAGCTTATCCTCTCCTACCTCCCCATCCCCACCCTCATCCGCGCCTCAGCCGTCTGCAAGTACTGGCACTCCCTCATCTCCTCCTCCACCTTCTCCTCCCCACTCTCCCATAAATACCCCTGGTTCTTCCTCTTCGGCATCCACAACACCTCCTCCAACTTCAACCAGTGCTTCGCCTTCGACCCCCTCTCCAATCTCTGGTTCCGCCTCCCCTCCCCCACCTTCCCCTCCCAGTCCTCCTCCTTCCTCGGCGCCGATGGCTTCTTCCTTGTCACCGCCCCTTTCTTCACCTTCTCCCATATCCTCAAGCGCCAATGGCTCTCCACCTCCCCTCTCCGATTTTCCCGCGTCAACCCCCTCGTCGGCGTCGATTCTCCCTCCTCCTCCTCATCCTCTGCCTCCTCCTCCCCAATCCCTAGCTTTGTCGTCGTCGGCGGGGTCCGATTAATCGGCAATTTGGTCGACATCGAGGACCGTTTGGCCGTGGAGATTTACAATCCCGATTCCGATTCATGGCTCCTCTGCCCGCCGCTCCCCGCCGATTTTCGCTCCGGAAACTCGTCAGAATCTCTCTCCTCCGCCCTCTTCAAGCGCCGATTCTACGTTTTCGGAATCTACTCCTGCTTTATTGCCTCGTTTGATCTCCGCACCCACGCCTGGAGCGAAGTCCAGACCCTCCGCCCGCCCGGGGTCGTCTTCTCCTTCCTGATTTCCTCCACCAACCACCTCGTCCTCGCCGGAATCTGCAACGGCCCTCTCGGTCCGTCATTTAACCTGTGGAAGATCGAGGAGGCCACCATGGAGTTCAGCGAGATCGCCATCATGCCGCAGGACTTGTTGAATGGATTGTTCGACGGCGATGAGGAAGACAAGTTTGCGAGCTTGAAATGTGTGGGATTGGGAAACCTTATATACGTGTTCAATGAGGAGTATCATAAGAAGTACCCGGCTTGTGTTTGCGAGATTGGTTCCGATGACAATGGCGGACCTTCGGGGAAGTGTAGCTGGAGGAGACTGCCCCAATTGCCTTCCCCTGTTAATAAATTCCATAAAGTCATCAGCTTTTCGTCGACAGTTTCCCCGCATAATATCCTTCGTGGCGAAGGGGAGGGCGAAGGAGACGGCGTTGTCAATGTGCAGCCTATGTTGAACTGA

Protein Analysis

397

Amino Acids

43.67

Weight (kDa)

5.6

Isoelectric Point (pI)

69.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 1.3e-08 F-box domain
F-box-like PF12937 10 - 40 1.4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1163
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 234
AccBSI CCGCTC 1 cut(s) 568
AccI GTMKAC 2 cut(s) 498, 1106
AccII CGCG 2 cut(s) 78, 384
AccIII TCCGGA 1 cut(s) 587
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 1 cut(s) 1079
AcyI GRCGYC 2 cut(s) 288, 402
AfaI GTAC 2 cut(s) 98, 980
AfiI CCNNNNNNNGG 5 cut(s) 234, 398, 549, 693, 724
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 6 cut(s) 199, 625, 877, 922, 958, 1186
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 2 cut(s) 155, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 7 cut(s) 15, 24, 40, 456, 918, 1041, 1098
AluI AGCT 7 cut(s) 15, 24, 40, 456, 918, 1041, 1098
Alw26I GTCTC 2 cut(s) 1042, 1149
Ama87I CYCGRG 1 cut(s) 722
Aor13HI TCCGGA 1 cut(s) 587
AoxI GGCC 3 cut(s) 516, 787, 828
ApeKI GCWGC 2 cut(s) 15, 1174
ApoI RAATTY 1 cut(s) 1079
AseI ATTAAT 1 cut(s) 482
AspLEI GCGC 4 cut(s) 80, 290, 348, 630
AspS9I GGNCC 5 cut(s) 475, 508, 788, 797, 1022
AsuC2I CCSGG 3 cut(s) 723, 724, 983
AsuHPI GGTGA 2 cut(s) 301, 316
AvaI CYCGRG 1 cut(s) 722
AvaII GGWCC 4 cut(s) 475, 508, 797, 1022
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 724, 909
BbvCI CCTCAGC 2 cut(s) 20, 82
BbvI GCAGC 2 cut(s) 2, 1186
BccI CCATC 3 cut(s) 68, 287, 863
BceAI ACGGC 5 cut(s) 71, 503, 802, 907, 1174
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 2 cut(s) 157, 694
BcnI CCSGG 3 cut(s) 723, 724, 983
BcoDI GTCTC 2 cut(s) 1042, 1149
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 3 cut(s) 291, 349, 631
BisI GCNGC 4 cut(s) 16, 566, 863, 1175
BlsI GCNGC 4 cut(s) 17, 567, 864, 1176
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 5 cut(s) 157, 694, 723, 724, 983
Bme18I GGWCC 4 cut(s) 475, 508, 797, 1022
BmeT110I CYCGRG 1 cut(s) 722
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 5 cut(s) 475, 508, 788, 797, 1022
BmiI GGNNCC 5 cut(s) 239, 289, 476, 554, 1006
BmrFI CCNGG 5 cut(s) 157, 694, 723, 724, 983
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 724, 909
BpmI CTGGAG 2 cut(s) 715, 1063
Bpu10I CCTNAGC 2 cut(s) 20, 82
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 3 cut(s) 723, 724, 983
BsaAI YACGTR 1 cut(s) 952
BsaBI GATNNNNATC 1 cut(s) 854
BsaHI GRCGYC 2 cut(s) 288, 402
BsaJI CCNNGG 6 cut(s) 155, 283, 519, 722, 723, 834
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 398, 549, 693, 724
Bse1I ACTGG 3 cut(s) 104, 202, 268
Bse8I GATNNNNATC 1 cut(s) 854
BseAI TCCGGA 1 cut(s) 587
BseBI CCWGG 2 cut(s) 157, 694
BseDI CCNNGG 6 cut(s) 155, 283, 519, 722, 723, 834
BseGI GGATG 4 cut(s) 60, 72, 174, 425
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 5 cut(s) 234, 398, 549, 693, 724
BseMII CTCAG 2 cut(s) 34, 96
BseNI ACTGG 3 cut(s) 104, 202, 268
BseXI GCAGC 2 cut(s) 2, 1186
Bsh1236I CGCG 2 cut(s) 78, 384
BshFI GGCC 3 cut(s) 518, 789, 830
BshNI GGYRCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 722
BsiSI CCGG 4 cut(s) 588, 723, 774, 983
BslI CCNNNNNNNGG 5 cut(s) 234, 398, 549, 693, 724
BsmAI GTCTC 2 cut(s) 1042, 1149
BsmBI CGTCTC 1 cut(s) 1149
BsnI GGCC 3 cut(s) 518, 789, 830
BsoBI CYCGRG 1 cut(s) 722
Bsp13I TCCGGA 1 cut(s) 587
Bsp143I GATC 3 cut(s) 676, 819, 849
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 3 cut(s) 518, 789, 830
BspCNI CTCAG 2 cut(s) 33, 95
BspEI TCCGGA 1 cut(s) 587
BspFNI CGCG 2 cut(s) 78, 384
BspLI GGNNCC 5 cut(s) 239, 289, 476, 554, 1006
BspT107I GGYRCC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 568
BsrI ACTGG 3 cut(s) 104, 202, 268
BssECI CCNNGG 6 cut(s) 155, 283, 519, 722, 723, 834
BssMI GATC 3 cut(s) 676, 819, 849
BssNI GRCGYC 2 cut(s) 288, 402
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 157, 694
Bst4CI ACNGT 2 cut(s) 512, 1111
Bst6I CTCTTC 2 cut(s) 173, 626
BstACI GRCGYC 2 cut(s) 288, 402
BstBAI YACGTR 1 cut(s) 952
BstC8I GCNNGC 3 cut(s) 563, 719, 916
BstDEI CTNAG 2 cut(s) 20, 82
BstDSI CCRYGG 2 cut(s) 519, 834
BstF5I GGATG 4 cut(s) 60, 72, 174, 425
BstFNI CGCG 2 cut(s) 78, 384
BstH2I RGCGCY 3 cut(s) 291, 349, 631
BstHHI GCGC 4 cut(s) 80, 290, 348, 630
BstKTI GATC 3 cut(s) 679, 822, 852
BstMAI GTCTC 2 cut(s) 1042, 1149
BstMBI GATC 3 cut(s) 676, 819, 849
BstMWI GCNNNNNNNGC 4 cut(s) 21, 294, 352, 1060
BstNI CCWGG 2 cut(s) 157, 694
BstSCI CCNGG 5 cut(s) 155, 692, 721, 722, 981
BstUI CGCG 2 cut(s) 78, 384
BstV1I GCAGC 2 cut(s) 2, 1186
BstV2I GAAGAC 2 cut(s) 724, 909
BsuRI GGCC 3 cut(s) 518, 789, 830
BtgI CCRYGG 2 cut(s) 519, 834
BtgZI GCGATG 1 cut(s) 909
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 4 cut(s) 60, 72, 174, 425
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 3 cut(s) 563, 719, 916
CfoI GCGC 4 cut(s) 80, 290, 348, 630
Cfr13I GGNCC 5 cut(s) 475, 508, 788, 797, 1022
Cfr9I CCCGGG 1 cut(s) 722
CpoI CGGWCCG 1 cut(s) 797
CseI GACGC 2 cut(s) 373, 391
Csp6I GTAC 2 cut(s) 97, 979
CspI CGGWCCG 1 cut(s) 797
CviAII CATG 3 cut(s) 549, 835, 859
CviQI GTAC 2 cut(s) 97, 979
DdeI CTNAG 2 cut(s) 20, 82
DinI GGCGCC 1 cut(s) 289
DpnI GATC 3 cut(s) 678, 821, 851
DpnII GATC 3 cut(s) 676, 819, 849
DrdI GACNNNNNNGTC 1 cut(s) 1163
DseDI GACNNNNNNGTC 1 cut(s) 1163
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 2 cut(s) 173, 626
EarI CTCTTC 2 cut(s) 173, 626
EciI GGCGGA 5 cut(s) 20, 230, 604, 704, 1035
Eco130I CCWWGG 1 cut(s) 834
Eco47I GGWCC 4 cut(s) 475, 508, 797, 1022
Eco88I CYCGRG 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 155, 692
EcoT14I CCWWGG 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 834
Esp3I CGTCTC 1 cut(s) 1149
FaeI CATG 3 cut(s) 552, 838, 862
FatI CATG 3 cut(s) 548, 834, 858
FauI CCCGC 6 cut(s) 389, 464, 570, 580, 726, 1125
FblI GTMKAC 2 cut(s) 498, 1106
Fnu4HI GCNGC 4 cut(s) 16, 566, 863, 1175
FokI GGATG 4 cut(s) 47, 59, 161, 412
Fsp4HI GCNGC 4 cut(s) 16, 566, 863, 1175
FspBI CTAG 1 cut(s) 453
GlaI GCGC 4 cut(s) 79, 289, 347, 629
GluI GCNGC 4 cut(s) 16, 566, 863, 1175
GsuI CTGGAG 2 cut(s) 715, 1063
HaeII RGCGCY 3 cut(s) 291, 349, 631
HaeIII GGCC 3 cut(s) 518, 789, 830
HapII CCGG 4 cut(s) 588, 723, 774, 983
HgaI GACGC 2 cut(s) 373, 391
HhaI GCGC 4 cut(s) 80, 290, 348, 630
Hin1I GRCGYC 2 cut(s) 288, 402
Hin1II CATG 3 cut(s) 552, 838, 862
Hin6I GCGC 4 cut(s) 78, 288, 346, 628
HinP1I GCGC 4 cut(s) 78, 288, 346, 628
HincII GTYRAC 3 cut(s) 388, 499, 1107
HindII GTYRAC 3 cut(s) 388, 499, 1107
HinfI GANTC 7 cut(s) 407, 539, 545, 602, 633, 648, 777
HpaII CCGG 4 cut(s) 588, 723, 774, 983
HphI GGTGA 2 cut(s) 301, 316
Hpy166II GTNNAC 3 cut(s) 388, 499, 1107
Hpy188I TCNGA 7 cut(s) 28, 374, 479, 544, 601, 647, 1009
Hpy188III TCNNGA 4 cut(s) 536, 588, 706, 742
Hpy8I GTNNAC 3 cut(s) 388, 499, 1107
Hpy99I CGWCG 7 cut(s) 32, 401, 407, 467, 470, 893, 1108
HpyCH4III ACNGT 2 cut(s) 512, 1111
HpyCH4IV ACGT 3 cut(s) 30, 639, 951
HpyCH4V TGCA 3 cut(s) 93, 783, 1174
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 294, 352, 1060
HpyF3I CTNAG 2 cut(s) 20, 82
HpySE526I ACGT 3 cut(s) 30, 639, 951
Hsp92I GRCGYC 2 cut(s) 288, 402
Hsp92II CATG 3 cut(s) 552, 838, 862
HspAI GCGC 4 cut(s) 78, 288, 346, 628
KasI GGCGCC 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 587
Kzo9I GATC 3 cut(s) 676, 819, 849
LmnI GCTCC 6 cut(s) 29, 37, 558, 573, 590, 696
Lsp1109I GCAGC 2 cut(s) 2, 1186
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 453
MaeII ACGT 3 cut(s) 30, 639, 951
MaeIII GTNAC 2 cut(s) 31, 307
MalI GATC 3 cut(s) 678, 821, 851
MbiI CCGCTC 1 cut(s) 568
MboI GATC 3 cut(s) 676, 819, 849
MboII GAAGA 8 cut(s) 154, 160, 292, 313, 613, 724, 829, 914
MfeI CAATTG 1 cut(s) 1058
MluCI AATT 3 cut(s) 490, 1058, 1079
Mly113I GGCGCC 1 cut(s) 288
MmeI TCCRAC 2 cut(s) 51, 216
MroI TCCGGA 1 cut(s) 587
MseI TTAA 3 cut(s) 482, 807, 1074
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 4 cut(s) 588, 723, 774, 983
MspR9I CCNGG 5 cut(s) 157, 694, 723, 724, 983
MunI CAATTG 1 cut(s) 1058
MvaI CCWGG 2 cut(s) 157, 694
MvnI CGCG 2 cut(s) 78, 384
MwoI GCNNNNNNNGC 4 cut(s) 21, 294, 352, 1060
NarI GGCGCC 1 cut(s) 288
NciI CCSGG 3 cut(s) 723, 724, 983
NcoI CCATGG 1 cut(s) 834
NdeII GATC 3 cut(s) 676, 819, 849
NlaIII CATG 3 cut(s) 552, 838, 862
NlaIV GGNNCC 5 cut(s) 239, 289, 476, 554, 1006
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 2 cut(s) 31, 307
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 696
PfeI GAWTC 7 cut(s) 407, 539, 545, 602, 633, 648, 777
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 4 cut(s) 17, 567, 864, 1176
PluTI GGCGCC 1 cut(s) 291
Ppu21I YACGTR 1 cut(s) 952
PshBI ATTAAT 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 155, 692
PspGI CCWGG 2 cut(s) 155, 692
PspN4I GGNNCC 5 cut(s) 239, 289, 476, 554, 1006
PspPI GGNCC 5 cut(s) 475, 508, 788, 797, 1022
PvuII CAGCTG 1 cut(s) 15
RsaI GTAC 2 cut(s) 98, 980
RsaNI GTAC 2 cut(s) 97, 979
Rsr2I CGGWCCG 1 cut(s) 797
RsrII CGGWCCG 1 cut(s) 797
SalI GTCGAC 2 cut(s) 497, 1105
SaqAI TTAA 3 cut(s) 482, 807, 1074
SatI GCNGC 4 cut(s) 16, 566, 863, 1175
Sau3AI GATC 3 cut(s) 676, 819, 849
Sau96I GGNCC 5 cut(s) 475, 508, 788, 797, 1022
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 5 cut(s) 157, 694, 723, 724, 983
SfaNI GCATC 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 289
SinI GGWCC 4 cut(s) 475, 508, 797, 1022
SmaI CCCGGG 1 cut(s) 724
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 3 cut(s) 490, 1058, 1079
SspDI GGCGCC 1 cut(s) 287
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 5 cut(s) 155, 692, 721, 722, 981
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 2 cut(s) 512, 1111
TaiI ACGT 3 cut(s) 33, 642, 954
TaqI TCGA 7 cut(s) 216, 405, 498, 504, 822, 888, 1106
TaqII GACCGA 1 cut(s) 785
TasI AATT 3 cut(s) 490, 1058, 1079
TatI WGTACW 1 cut(s) 96
TauI GCSGC 2 cut(s) 568, 865
TfiI GAWTC 7 cut(s) 407, 539, 545, 602, 633, 648, 777
Tru1I TTAA 3 cut(s) 482, 807, 1074
Tru9I TTAA 3 cut(s) 482, 807, 1074
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 2 cut(s) 31, 307
TseI GCWGC 2 cut(s) 15, 1174
Tsp45I GTSAC 2 cut(s) 31, 307
TspDTI ATGAA 1 cut(s) 537
TspGWI ACGGA 2 cut(s) 50, 789
TspMI CCCGGG 1 cut(s) 722
TspRI CASTG 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 4 cut(s) 475, 508, 797, 1022
VspI ATTAAT 1 cut(s) 482
XapI RAATTY 1 cut(s) 1079
XmaI CCCGGG 1 cut(s) 722
XmiI GTMKAC 2 cut(s) 498, 1106
XspI CTAG 1 cut(s) 453
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.