Rroxscaffold_7G00183630

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
22711260 .. 22712399
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183630.1

Sequence Viewer

Length: 1140 bp
ATGACGGAAATCAGCAACCTGAGCTCCGACGTGACGGAGCTGATCCTCTCCTACCTCCCCATCCCGACCCTCGTCCGAGCCTCCACCGTCTGCAAGCTCTGGCAATCCATCATCTCCTCCACCACCTTCTCCGCCACGCAAACCCAATCCCACCCCTGGTTCTTCCTCTACGGCATCCACAACACCTCCTCCAAGAACAACCAGTCCTTCGCCTTCGACCCTCTCTCCAACCGCTGGCTCCGCCTCCCCACCCCCACCTTCCCTCCCCACCACTACTCCCACTCCTGCTTCCTCGGCGCCGACGGCTTCTTCCTCATCACCGCCCCCAACTTCACCTACTCCAGAATCCTCAAGCGCTCTTGGCGCTCCACCTCGCCTCTCCACTTCTCCCGCATCAACCCTCTTCTCGGCGTTTTCGACTCCGGCTCTCTCCAACCCAACTTCATCGTCGTCGGCGGTGTCAGATTCATCGGCAACTTGGTCGACATCGAGGACCGCTTGGCCGTCGAGATCTACAGCCCCGACTCCGATTCGTGGCAGCTCGGTCCGCCTCTCCCTGCTGATTTCAGATCCGGCAATTCCTCCCAGTCCTTGTCATCCGCCCTCTTCAAAGGGAGGTTCTACGTCTTCGGCATCTATTCGTGCTTCATTTCATCTTTTGACCTACACACCAATGCTTGGAGCCAAGTCCAGACTCTCCGGCCGCCTGGAGTTGTCTTCTCTTTCTTGATTGGCTGCCGCGACAGGCTTGTTCTGGCCGGAATCTGCAACGGGCCTCTCGGATCCTCCTTTAATCTGTGGAGGATCGAGGAGGCCACCATGGAGTTCAGTGAGATTGCAATCATGCCTCAGGACTTGCTGTGTAGCTTGTTTGAGGGGGATGAGGAGGATAAGTTTGCGAGCTTGAAATGTGTGGGCTTGGGAAATCTTATATACGTGTTTAATGAAGAGTACCATAAGAAGTACCCGGCTTGTGTTTGCGAGATTAGCAGTGAGACTGGCCAGTGTAGCTGGAGGAGAGTGCCTCCGTTGCCTTCACCTGTGAATAAGTTTCACCAAGTTATAAGCTTTTGTTCCACGGTTTCGCTCAATAGTATTCTTCAGGCTGAGGAAGAGGGAGACGTTGCAGCCTATGGTTGA

Protein Analysis

379

Amino Acids

42.33

Weight (kDa)

5.72

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 7.8e-09 F-box domain
F-box-like PF12937 10 - 41 5.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1064
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 2 cut(s) 234, 678
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 741
AclWI GGATC 5 cut(s) 37, 564, 777, 790, 812
AcoI YGGCCR 4 cut(s) 501, 701, 756, 1000
AcuI CTGAAG 1 cut(s) 1085
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 953, 965
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 5 cut(s) 156, 234, 407, 534, 678
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 2 cut(s) 610, 907
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 2 cut(s) 155, 706
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 8 cut(s) 24, 40, 97, 541, 867, 903, 1011, 1068
AluI AGCT 8 cut(s) 24, 40, 97, 541, 867, 903, 1011, 1068
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 2 cut(s) 989, 1113
AlwI GGATC 5 cut(s) 37, 564, 777, 790, 812
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 6 cut(s) 501, 701, 756, 773, 813, 1000
ApeKI GCWGC 3 cut(s) 538, 735, 1127
AspLEI GCGC 3 cut(s) 299, 357, 366
AspS9I GGNCC 3 cut(s) 493, 545, 773
AsuC2I CCSGG 1 cut(s) 968
AsuHPI GGTGA 4 cut(s) 310, 325, 1029, 1046
AvaII GGWCC 2 cut(s) 493, 545
AxyI CCTNAGG 1 cut(s) 849
BalI TGGCCA 1 cut(s) 1002
BamHI GGATCC 1 cut(s) 782
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 619, 709
Bbv12I GWGCWC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 1107
BbvI GCAGC 2 cut(s) 550, 722
BccI CCATC 2 cut(s) 68, 116
BceAI ACGGC 3 cut(s) 187, 319, 488
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BciT130I CCWGG 2 cut(s) 157, 708
BcnI CCSGG 1 cut(s) 968
BcoDI GTCTC 2 cut(s) 989, 1113
BfmI CTRYAG 1 cut(s) 514
BfoI RGCGCY 3 cut(s) 300, 358, 367
BglII AGATCT 1 cut(s) 510
BisI GCNGC 5 cut(s) 539, 704, 736, 739, 1128
BlsI GCNGC 5 cut(s) 540, 705, 737, 740, 1129
Bme1390I CCNGG 3 cut(s) 157, 708, 968
Bme18I GGWCC 2 cut(s) 493, 545
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 493, 545, 773
BmiI GGNNCC 4 cut(s) 239, 298, 683, 784
BmrFI CCNGG 3 cut(s) 157, 708, 968
BmrI ACTGGG 1 cut(s) 580
BmsI GCATC 3 cut(s) 183, 402, 642
BmuI ACTGGG 1 cut(s) 580
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 2 cut(s) 619, 709
BplI GAGNNNNNCTC 2 cut(s) 1009, 1041
BpmI CTGGAG 3 cut(s) 325, 729, 1033
Bpu10I CCTNAGC 2 cut(s) 20, 1107
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 968
BsaAI YACGTR 1 cut(s) 937
BsaBI GATNNNNATC 1 cut(s) 839
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 155, 292, 819, 1077
Bsc4I CCNNNNNNNGG 5 cut(s) 156, 234, 407, 534, 678
Bse1I ACTGG 4 cut(s) 202, 586, 1003, 1003
Bse21I CCTNAGG 1 cut(s) 849
Bse8I GATNNNNATC 1 cut(s) 839
BseBI CCWGG 2 cut(s) 157, 708
BseDI CCNNGG 4 cut(s) 155, 292, 819, 1077
BseGI GGATG 4 cut(s) 60, 174, 596, 886
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 5 cut(s) 156, 234, 407, 534, 678
BseMII CTCAG 3 cut(s) 11, 863, 1098
BseNI ACTGG 4 cut(s) 202, 586, 1003, 1003
BseRI GAGGAG 5 cut(s) 106, 178, 824, 899, 1030
BseX3I CGGCCG 1 cut(s) 701
BseXI GCAGC 2 cut(s) 550, 722
Bsh1236I CGCG 1 cut(s) 741
Bsh1285I CGRYCG 1 cut(s) 704
BshFI GGCC 6 cut(s) 503, 703, 758, 775, 815, 1002
BshNI GGYRCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 5 cut(s) 423, 573, 700, 759, 968
BslI CCNNNNNNNGG 5 cut(s) 156, 234, 407, 534, 678
BsmAI GTCTC 2 cut(s) 989, 1113
BsmBI CGTCTC 1 cut(s) 1113
BsnI GGCC 6 cut(s) 503, 703, 758, 775, 815, 1002
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 5 cut(s) 42, 510, 569, 782, 804
Bsp19I CCATGG 1 cut(s) 819
BspANI GGCC 6 cut(s) 503, 703, 758, 775, 815, 1002
BspCNI CTCAG 3 cut(s) 12, 862, 1099
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 4 cut(s) 239, 298, 683, 784
BspPI GGATC 5 cut(s) 37, 564, 777, 790, 812
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 4 cut(s) 202, 586, 1003, 1003
BssECI CCNNGG 4 cut(s) 155, 292, 819, 1077
BssMI GATC 5 cut(s) 42, 510, 569, 782, 804
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 157, 708
Bst4CI ACNGT 2 cut(s) 88, 1081
Bst6I CTCTTC 4 cut(s) 408, 611, 942, 1107
BstACI GRCGYC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 937
BstC8I GCNNGC 3 cut(s) 95, 236, 901
BstDEI CTNAG 3 cut(s) 20, 849, 1107
BstDSI CCRYGG 2 cut(s) 819, 1077
BstF5I GGATG 4 cut(s) 60, 174, 596, 886
BstFNI CGCG 1 cut(s) 741
BstH2I RGCGCY 3 cut(s) 300, 358, 367
BstHHI GCGC 3 cut(s) 299, 357, 366
BstKTI GATC 5 cut(s) 45, 513, 572, 785, 807
BstMAI GTCTC 2 cut(s) 989, 1113
BstMBI GATC 5 cut(s) 42, 510, 569, 782, 804
BstMCI CGRYCG 1 cut(s) 704
BstNI CCWGG 2 cut(s) 157, 708
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 3 cut(s) 155, 706, 966
BstSFI CTRYAG 1 cut(s) 514
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 2 cut(s) 550, 722
BstV2I GAAGAC 2 cut(s) 619, 709
BstX2I RGATCY 3 cut(s) 510, 569, 782
BstYI RGATCY 3 cut(s) 510, 569, 782
BstZI CGGCCG 1 cut(s) 701
Bsu36I CCTNAGG 1 cut(s) 849
BsuRI GGCC 6 cut(s) 503, 703, 758, 775, 815, 1002
BtgI CCRYGG 2 cut(s) 819, 1077
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 4 cut(s) 60, 174, 596, 886
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 3 cut(s) 835, 997, 1010
Cac8I GCNNGC 3 cut(s) 95, 236, 901
CfoI GCGC 3 cut(s) 299, 357, 366
Cfr13I GGNCC 3 cut(s) 493, 545, 773
CpoI CGGWCCG 1 cut(s) 545
Csp6I GTAC 2 cut(s) 952, 964
CspI CGGWCCG 1 cut(s) 545
CviAII CATG 2 cut(s) 820, 844
CviQI GTAC 2 cut(s) 952, 964
DdeI CTNAG 3 cut(s) 20, 849, 1107
DinI GGCGCC 1 cut(s) 298
DpnI GATC 5 cut(s) 44, 512, 571, 784, 806
DpnII GATC 5 cut(s) 42, 510, 569, 782, 804
EaeI YGGCCR 4 cut(s) 501, 701, 756, 1000
EagI CGGCCG 1 cut(s) 701
Eam1104I CTCTTC 4 cut(s) 408, 611, 942, 1107
EarI CTCTTC 4 cut(s) 408, 611, 942, 1107
EciI GGCGGA 4 cut(s) 121, 230, 537, 589
Ecl136II GAGCTC 1 cut(s) 24
EclXI CGGCCG 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 819
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 2 cut(s) 493, 545
Eco47III AGCGCT 1 cut(s) 356
Eco52I CGGCCG 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 1085
Eco81I CCTNAGG 1 cut(s) 849
EcoICRI GAGCTC 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 155, 706
EcoT14I CCWWGG 1 cut(s) 819
EcoT38I GRGCYC 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 1 cut(s) 1113
FaeI CATG 2 cut(s) 823, 847
FaiI YATR 7 cut(s) 821, 845, 932, 934, 957, 1064, 1134
FatI CATG 2 cut(s) 819, 843
FauI CCCGC 1 cut(s) 398
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 5 cut(s) 539, 704, 736, 739, 1128
FokI GGATG 4 cut(s) 47, 161, 583, 893
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 539, 704, 736, 739, 1128
GlaI GCGC 3 cut(s) 298, 356, 365
GluI GCNGC 5 cut(s) 539, 704, 736, 739, 1128
GsuI CTGGAG 3 cut(s) 325, 729, 1033
HaeII RGCGCY 3 cut(s) 300, 358, 367
HaeIII GGCC 6 cut(s) 503, 703, 758, 775, 815, 1002
HapII CCGG 5 cut(s) 423, 573, 700, 759, 968
HhaI GCGC 3 cut(s) 299, 357, 366
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 823, 847
Hin6I GCGC 3 cut(s) 297, 355, 364
HinP1I GCGC 3 cut(s) 297, 355, 364
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 1066
HinfI GANTC 7 cut(s) 345, 419, 465, 524, 530, 694, 762
HpaII CCGG 5 cut(s) 423, 573, 700, 759, 968
HphI GGTGA 4 cut(s) 310, 325, 1029, 1046
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 6 cut(s) 28, 77, 464, 529, 569, 782
Hpy188III TCNNGA 6 cut(s) 64, 342, 508, 691, 727, 851
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 5 cut(s) 32, 305, 452, 455, 509
HpyAV CCTTC 5 cut(s) 136, 217, 223, 268, 1044
HpyCH4III ACNGT 2 cut(s) 88, 1081
HpyCH4IV ACGT 4 cut(s) 30, 624, 936, 1122
HpyCH4V TGCA 4 cut(s) 93, 768, 839, 1127
HpyF3I CTNAG 3 cut(s) 20, 849, 1107
HpySE526I ACGT 4 cut(s) 30, 624, 936, 1122
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 823, 847
HspAI GCGC 3 cut(s) 297, 355, 364
KasI GGCGCC 1 cut(s) 296
Kzo9I GATC 5 cut(s) 42, 510, 569, 782, 804
LmnI GCTCC 5 cut(s) 29, 37, 243, 371, 681
Lsp1109I GCAGC 2 cut(s) 550, 722
LweI GCATC 3 cut(s) 183, 402, 642
MaeII ACGT 4 cut(s) 30, 624, 936, 1122
MaeIII GTNAC 1 cut(s) 31
MalI GATC 5 cut(s) 44, 512, 571, 784, 806
MboI GATC 5 cut(s) 42, 510, 569, 782, 804
MboII GAAGA 9 cut(s) 154, 301, 395, 598, 619, 709, 959, 1091, 1124
MflI RGATCY 3 cut(s) 510, 569, 782
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 1002
MluCI AATT 1 cut(s) 577
MluNI TGGCCA 1 cut(s) 1002
Mly113I GGCGCC 1 cut(s) 297
MlyI GAGTC 3 cut(s) 413, 518, 688
MmeI TCCRAC 3 cut(s) 51, 252, 457
Mox20I TGGCCA 1 cut(s) 1002
MscI TGGCCA 1 cut(s) 1002
MseI TTAA 2 cut(s) 792, 942
MslI CAYNNNNRTG 1 cut(s) 672
Msp20I TGGCCA 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 5 cut(s) 423, 573, 700, 759, 968
MspR9I CCNGG 3 cut(s) 157, 708, 968
MvaI CCWGG 2 cut(s) 157, 708
MvnI CGCG 1 cut(s) 741
NarI GGCGCC 1 cut(s) 297
NciI CCSGG 1 cut(s) 968
NcoI CCATGG 1 cut(s) 819
NdeII GATC 5 cut(s) 42, 510, 569, 782, 804
NlaIII CATG 2 cut(s) 823, 847
NlaIV GGNNCC 4 cut(s) 239, 298, 683, 784
NmeAIII GCCGAG 2 cut(s) 273, 387
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PfeI GAWTC 4 cut(s) 345, 465, 530, 762
PflMI CCANNNNNTGG 2 cut(s) 234, 678
PkrI GCNGC 5 cut(s) 540, 705, 737, 740, 1129
PleI GAGTC 3 cut(s) 413, 518, 688
PluTI GGCGCC 1 cut(s) 300
PpsI GAGTC 3 cut(s) 413, 518, 688
Ppu21I YACGTR 1 cut(s) 937
PshAI GACNNNNGTC 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1064
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 2 cut(s) 155, 706
PspGI CCWGG 2 cut(s) 155, 706
PspN4I GGNNCC 4 cut(s) 239, 298, 683, 784
PspPI GGNCC 3 cut(s) 493, 545, 773
PsuI RGATCY 3 cut(s) 510, 569, 782
RsaI GTAC 2 cut(s) 953, 965
RsaNI GTAC 2 cut(s) 952, 964
RseI CAYNNNNRTG 1 cut(s) 672
Rsr2I CGGWCCG 1 cut(s) 545
RsrII CGGWCCG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 792, 942
SatI GCNGC 5 cut(s) 539, 704, 736, 739, 1128
Sau3AI GATC 5 cut(s) 42, 510, 569, 782, 804
Sau96I GGNCC 3 cut(s) 493, 545, 773
SchI GAGTC 3 cut(s) 413, 518, 688
ScrFI CCNGG 3 cut(s) 157, 708, 968
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 3 cut(s) 183, 402, 642
SfcI CTRYAG 1 cut(s) 514
SfoI GGCGCC 1 cut(s) 298
SinI GGWCC 2 cut(s) 493, 545
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 577
SspDI GGCGCC 1 cut(s) 296
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 155, 706, 966
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 2 cut(s) 88, 1081
TaiI ACGT 4 cut(s) 33, 627, 939, 1125
TaqI TCGA 6 cut(s) 216, 417, 483, 489, 507, 807
TaqII GACCGA 1 cut(s) 533
TasI AATT 1 cut(s) 577
TauI GCSGC 2 cut(s) 706, 741
TfiI GAWTC 4 cut(s) 345, 465, 530, 762
Tru1I TTAA 2 cut(s) 792, 942
Tru9I TTAA 2 cut(s) 792, 942
TscAI CASTG 3 cut(s) 835, 997, 1010
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 538, 735, 1127
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 5 cut(s) 433, 457, 637, 642, 960
TspGWI ACGGA 3 cut(s) 20, 50, 1017
TspRI CASTG 3 cut(s) 835, 997, 1010
Van91I CCANNNNNTGG 2 cut(s) 234, 678
VpaK11BI GGWCC 2 cut(s) 493, 545
XmiI GTMKAC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.