Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006858

Physical Location & Seq

Genomic Coordinates Reverse (-)

19196721 .. 19199537

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G204900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGACAGCCATGAGCAACCTCAGCTCAGACGTCACAGAGCTCATCTTCTCCTACCTCCCAATCCCAACCCTCATCCGCGCCTCCACCGTATGCAAGCTCTGGCACTCCATCATCTCCTCCTCCACCTTCTCCCAGCTCTCCACCCAATCCCAGAAATACCCCTGGTTCTTCCTCTACGGCATCCACAACACATCCTCCAACTTCAACCAGTCCTTCGCCTTCGACCCAGTCTCCAATCTCTGGTTCCGCCTTCCCTCCCCCACCTTCCCTTCCCAGTCCTCCTCCTTCCTCGGCGTCGATGGCTTCTTCCTCATCACCGCCCCATTCTTCACCTTCTCCCCAATCCTCAAGCGCCATTCGCACTCCACCTCCCCTCTCCGCTTCTCCCGCATCAACCCCCTTGTCGGCGTCTTCGACTCTGGCTCGTCGTCTCCGCCAAGCTTCATCGTCGTCGGCGGCGTCCGCTTCATCGGCAATTTGGTCGACATCGAGGACCGTTTGGCTGTGGAGATTTACAATCCCAATTCCGATTCTTGGCTCCTCTGCCCTCCTCTCCCCGCCGATTTCCGCTCCGGCAACTCGTCCCAGTCTCTCTCATCGGCCCTCTTCAAGCGCCGGTTCTACGTCTTCGGCATCTACTCCTGCTTCATTTCCTCATTTGATCTCCACACCCATCTCTGGAGCGAGGTCCAGACCCTCCGCCCACCCGGGGTCGTCTTCTCCTTCTTGATTTCCTGCATGGACCGGCTCGTTCTAGCTGGAATCTGCAACGGCCCCCTTGGGTCCTCCTTCAATTTGTGGAAGATCGAGGAGGCCACCATGGAGTTCAGCGAGATTGCGATCATGCCTCATGACTTGTTGTATGGGTTGTTCGATGGGGATGAAGAAGACAAGTTTGCAAGCTTGAAATGCGTGGGGTTGGGCAATCTGATATACGTGTTCAATGAGGAGTATCACAAAAAGTACCCAGCTTGTATCTGTGAGATTAGCAGTGAGGATGGGAAGTGTAGATGGAGGAAAGTGCCCCAATTGCCTTCCCCTGTTAATAAGTTCCATAAAGTTGTTAGCTTTTCGTCCACAGTTTCGCTTCATAGTATTCTTCAGAGTGAAGGAGGAGGAGATGTTGTTGTTCCTTTGCAGCCCATGTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

385

Amino Acids

42.93

Weight (kDa)

6.06

Isoelectric Point (pI)

72.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24760 AT3G24760
fragaria_vesca	FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330
malus_domestica	MD05G1178400.v1.1
prunus_persica	Prupe.8G204900_v2.0.a1 Prupe.8G204900_v2.0.a1
pyrus_communis	pycom10g14360
rosa_chinensis	RchiOBHm_Chr6g0285141
rosa_laevigata	RLG00000012669
rosa_multiflora	Rmu_co8327663.1_g000001 Rmu_sc0002535.1_g000018 Rmu_sc0012068.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183630 Rroxscaffold_7G00184000
rosa_rugosa	Rorug06G0172000 Rorug06G0172100 Rorug06G0172100
rosa_samantha	Rh6BG283400 Rh6CG285200 Rh6DG278300
rosa_wichuraiana	Rw6G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	570
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	1085
AcyI	GRCGYC	4 cut(s)	30, 294, 408, 459
AfaI	GTAC	1 cut(s)	965
AfiI	CCNNNNNNNGG	5 cut(s)	240, 404, 534, 678, 709
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	5 cut(s)	205, 610, 793, 907, 943
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	9 cut(s)	24, 40, 97, 136, 441, 758, 903, 971, 1068
AluI	AGCT	9 cut(s)	24, 40, 97, 136, 441, 758, 903, 971, 1068
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	235, 435, 594
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	3 cut(s)	600, 772, 813
ApeKI	GCWGC	1 cut(s)	1138
AspLEI	GCGC	3 cut(s)	80, 354, 615
AspS9I	GGNCC	6 cut(s)	493, 601, 688, 742, 773, 783
AsuC2I	CCSGG	2 cut(s)	708, 709
AsuHPI	GGTGA	2 cut(s)	307, 322
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	4 cut(s)	493, 688, 742, 783
BaeGI	GKGCMC	1 cut(s)	1026
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	4 cut(s)	403, 619, 709, 894
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	1150
BccI	CCATC	6 cut(s)	116, 293, 681, 869, 992, 1005
BceAI	ACGGC	2 cut(s)	193, 787
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	2 cut(s)	708, 709
BcoDI	GTCTC	3 cut(s)	235, 435, 594
BfaI	CTAG	1 cut(s)	755
BfoI	RGCGCY	2 cut(s)	355, 616
BisI	GCNGC	2 cut(s)	457, 1139
BlsI	GCNGC	2 cut(s)	458, 1140
Bme1390I	CCNGG	3 cut(s)	163, 708, 709
Bme18I	GGWCC	4 cut(s)	493, 688, 742, 783
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	6 cut(s)	493, 601, 688, 742, 773, 783
BmiI	GGNNCC	4 cut(s)	245, 539, 775, 784
BmrFI	CCNGG	3 cut(s)	163, 708, 709
BmrI	ACTGGG	3 cut(s)	221, 268, 580
BmsI	GCATC	3 cut(s)	189, 399, 642
BmuI	ACTGGG	3 cut(s)	221, 268, 580
BpiI	GAAGAC	4 cut(s)	403, 619, 709, 894
BpmI	CTGGAG	1 cut(s)	700
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	708, 709
BsaAI	YACGTR	1 cut(s)	937
BsaBI	GATNNNNATC	1 cut(s)	839
BsaHI	GRCGYC	4 cut(s)	30, 294, 408, 459
BsaJI	CCNNGG	6 cut(s)	161, 289, 707, 708, 778, 819
Bsc4I	CCNNNNNNNGG	5 cut(s)	240, 404, 534, 678, 709
Bse118I	RCCGGY	2 cut(s)	615, 744
Bse1I	ACTGG	4 cut(s)	208, 227, 274, 586
Bse8I	GATNNNNATC	1 cut(s)	839
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	6 cut(s)	161, 289, 707, 708, 778, 819
BseGI	GGATG	5 cut(s)	72, 180, 191, 886, 1003
BseJI	GATNNNNATC	1 cut(s)	839
BseLI	CCNNNNNNNGG	5 cut(s)	240, 404, 534, 678, 709
BseMII	CTCAG	2 cut(s)	34, 39
BseNI	ACTGG	4 cut(s)	208, 227, 274, 586
BseRI	GAGGAG	9 cut(s)	106, 109, 271, 530, 540, 824, 962, 1128, 1131
BseSI	GKGCMC	1 cut(s)	1026
BseXI	GCAGC	1 cut(s)	1150
BseYI	CCCAGC	2 cut(s)	132, 967
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	602, 774, 815
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	4 cut(s)	573, 616, 708, 745
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	5 cut(s)	240, 404, 534, 678, 709
BsmAI	GTCTC	3 cut(s)	235, 435, 594
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	3 cut(s)	602, 774, 815
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	42, 1026
Bsp143I	GATC	3 cut(s)	661, 804, 840
Bsp19I	CCATGG	1 cut(s)	819
BspANI	GGCC	3 cut(s)	602, 774, 815
BspCNI	CTCAG	2 cut(s)	33, 38
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	4 cut(s)	245, 539, 775, 784
BsrBI	CCGCTC	1 cut(s)	570
BsrFI	RCCGGY	2 cut(s)	615, 744
BsrI	ACTGG	4 cut(s)	208, 227, 274, 586
BssAI	RCCGGY	2 cut(s)	615, 744
BssECI	CCNNGG	6 cut(s)	161, 289, 707, 708, 778, 819
BssMI	GATC	3 cut(s)	661, 804, 840
BssNI	GRCGYC	4 cut(s)	30, 294, 408, 459
BssT1I	CCWWGG	2 cut(s)	778, 819
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	88, 497, 1081
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	4 cut(s)	30, 294, 408, 459
BstBAI	YACGTR	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	95, 901
BstDEI	CTNAG	2 cut(s)	20, 25
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	5 cut(s)	72, 180, 191, 886, 1003
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	2 cut(s)	355, 616
BstHHI	GCGC	3 cut(s)	80, 354, 615
BstKTI	GATC	3 cut(s)	664, 807, 843
BstMAI	GTCTC	3 cut(s)	235, 435, 594
BstMBI	GATC	3 cut(s)	661, 804, 840
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 300, 358, 387, 462, 471, 909, 1030
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	3 cut(s)	161, 706, 707
BstSLI	GKGCMC	1 cut(s)	1026
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	1150
BstV2I	GAAGAC	4 cut(s)	403, 619, 709, 894
BsuRI	GGCC	3 cut(s)	602, 774, 815
BtgI	CCRYGG	1 cut(s)	819
BtsCI	GGATG	5 cut(s)	72, 180, 191, 886, 1003
BtsI	GCAGTG	1 cut(s)	997
BtsIMutI	CAGTG	1 cut(s)	997
Cac8I	GCNNGC	2 cut(s)	95, 901
CciI	TCATGA	1 cut(s)	850
CfoI	GCGC	3 cut(s)	80, 354, 615
Cfr10I	RCCGGY	2 cut(s)	615, 744
Cfr13I	GGNCC	6 cut(s)	493, 601, 688, 742, 773, 783
Cfr9I	CCCGGG	1 cut(s)	707
CseI	GACGC	3 cut(s)	283, 397, 448
Csp6I	GTAC	1 cut(s)	964
CviAII	CATG	6 cut(s)	10, 739, 820, 844, 851, 1144
CviQI	GTAC	1 cut(s)	964
DdeI	CTNAG	2 cut(s)	20, 25
DpnI	GATC	3 cut(s)	663, 806, 842
DpnII	GATC	3 cut(s)	661, 804, 840
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	3 cut(s)	236, 423, 689
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	778, 819
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	4 cut(s)	493, 688, 742, 783
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	1085
Eco88I	CYCGRG	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	778, 819
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	2 cut(s)	778, 819
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	6 cut(s)	13, 742, 823, 847, 854, 1147
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	6 cut(s)	9, 738, 819, 843, 850, 1143
FauI	CCCGC	2 cut(s)	395, 565
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	457, 1139
FokI	GGATG	5 cut(s)	59, 167, 178, 893, 1010
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	457, 1139
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	3 cut(s)	79, 353, 614
GluI	GCNGC	2 cut(s)	457, 1139
GsaI	CCCAGC	2 cut(s)	136, 971
GsuI	CTGGAG	1 cut(s)	700
HaeII	RGCGCY	2 cut(s)	355, 616
HaeIII	GGCC	3 cut(s)	602, 774, 815
HapII	CCGG	4 cut(s)	573, 616, 708, 745
HgaI	GACGC	3 cut(s)	283, 397, 448
HhaI	GCGC	3 cut(s)	80, 354, 615
Hin1I	GRCGYC	4 cut(s)	30, 294, 408, 459
Hin1II	CATG	6 cut(s)	13, 742, 823, 847, 854, 1147
Hin6I	GCGC	3 cut(s)	78, 352, 613
HinP1I	GCGC	3 cut(s)	78, 352, 613
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	2 cut(s)	439, 901
HinfI	GANTC	3 cut(s)	416, 530, 762
HpaII	CCGG	4 cut(s)	573, 616, 708, 745
HphI	GGTGA	2 cut(s)	307, 322
Hpy166II	GTNNAC	2 cut(s)	484, 1077
Hpy188I	TCNGA	4 cut(s)	28, 529, 930, 1104
Hpy188III	TCNNGA	4 cut(s)	679, 691, 727, 851
Hpy8I	GTNNAC	2 cut(s)	484, 1077
Hpy99I	CGWCG	4 cut(s)	299, 430, 452, 455
HpyCH4III	ACNGT	3 cut(s)	88, 497, 1081
HpyCH4IV	ACGT	3 cut(s)	30, 624, 936
HpyCH4V	TGCA	5 cut(s)	93, 738, 768, 899, 1138
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 300, 358, 387, 462, 471, 909, 1030
HpyF3I	CTNAG	2 cut(s)	20, 25
HpySE526I	ACGT	3 cut(s)	30, 624, 936
Hsp92I	GRCGYC	4 cut(s)	30, 294, 408, 459
Hsp92II	CATG	6 cut(s)	13, 742, 823, 847, 854, 1147
HspAI	GCGC	3 cut(s)	78, 352, 613
Kzo9I	GATC	3 cut(s)	661, 804, 840
LmnI	GCTCC	3 cut(s)	543, 575, 681
Lsp1109I	GCAGC	1 cut(s)	1150
LweI	GCATC	3 cut(s)	189, 399, 642
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	3 cut(s)	30, 624, 936
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	663, 806, 842
MbiI	CCGCTC	1 cut(s)	570
MboI	GATC	3 cut(s)	661, 804, 840
MfeI	CAATTG	1 cut(s)	1028
MhlI	GDGCHC	2 cut(s)	42, 1026
MluCI	AATT	4 cut(s)	475, 523, 793, 1028
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	222
MseI	TTAA	1 cut(s)	1044
MspI	CCGG	4 cut(s)	573, 616, 708, 745
MspR9I	CCNGG	3 cut(s)	163, 708, 709
MunI	CAATTG	1 cut(s)	1028
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	8 cut(s)	21, 300, 358, 387, 462, 471, 909, 1030
NciI	CCSGG	2 cut(s)	708, 709
NcoI	CCATGG	1 cut(s)	819
NdeII	GATC	3 cut(s)	661, 804, 840
NlaIII	CATG	6 cut(s)	13, 742, 823, 847, 854, 1147
NlaIV	GGNNCC	4 cut(s)	245, 539, 775, 784
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 456
PfeI	GAWTC	2 cut(s)	530, 762
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	458, 1140
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	937
PpuMI	RGGWCCY	1 cut(s)	783
Psp124BI	GAGCTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	2 cut(s)	132, 967
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	4 cut(s)	245, 539, 775, 784
PspPI	GGNCC	6 cut(s)	493, 601, 688, 742, 773, 783
PspPPI	RGGWCCY	1 cut(s)	783
PsrI	GAACNNNNNNTAC	2 cut(s)	854, 886
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	965
RsaNI	GTAC	1 cut(s)	964
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	1044
SatI	GCNGC	2 cut(s)	457, 1139
Sau3AI	GATC	3 cut(s)	661, 804, 840
Sau96I	GGNCC	6 cut(s)	493, 601, 688, 742, 773, 783
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	163, 708, 709
SduI	GDGCHC	2 cut(s)	42, 1026
SfaNI	GCATC	3 cut(s)	189, 399, 642
SinI	GGWCC	4 cut(s)	493, 688, 742, 783
SmaI	CCCGGG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	475, 523, 793, 1028
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	161, 706, 707
StyI	CCWWGG	2 cut(s)	778, 819
TaaI	ACNGT	3 cut(s)	88, 497, 1081
TaiI	ACGT	3 cut(s)	33, 627, 939
TaqI	TCGA	7 cut(s)	222, 297, 414, 483, 489, 807, 873
TasI	AATT	4 cut(s)	475, 523, 793, 1028
TauI	GCSGC	1 cut(s)	459
TfiI	GAWTC	2 cut(s)	530, 762
Tru1I	TTAA	1 cut(s)	1044
Tru9I	TTAA	1 cut(s)	1044
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	1138
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	433, 457, 637, 897, 1079
TspMI	CCCGGG	1 cut(s)	707
TspRI	CASTG	1 cut(s)	997
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	240
VpaK11BI	GGWCC	4 cut(s)	493, 688, 742, 783
XmaI	CCCGGG	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	755
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.