Rh6DG278300

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
47248117 .. 47251094
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG278300.1

Sequence Viewer

Length: 1167 bp
ATGACGGAAATCACGAACCTGAGCTCCGACGTGACGGAGCTGATCCTCTCCTACCTCCCCATCCCGACCCTCGTCCGAGCCTCCACCGTCTGCAAGCTCTGGCAGTCCATCATCTCCTCCACCACCTTCTCCGCCACCCAAACCCAATCCCAATCCCAATCCCACCCCTGGTTCTTCCTCTACGGCATCCACAACACCTCCTCCAAGAACAACCAGTCCTTCGCCTTCGACCCTCTCTCCAACCGCTGGCTCCGCCTCCCCACCCCCACCTTCCCTCCCCACCACTACTCCCACTCCTGCTTCCTCGGCGCCGACGGCTTCTTCCTCATCACCGCCCCCAACTTCACCTACTCCAGAATCCTCAAGCGCTCTTGGCGCTCCACCTCGCCTCTCCACTTCTCCCGCATCAACCCTCTTCTCGGCGTCTTCGACTCCGGCTCTCTCCTCCCCAACTTCATCGTCGTCGGCGGTGTCAGATTCATCGGCAACTTGGTCGACATCGAGGACCGCTTGGCCGTCGAGATCTACACCCCCGACTCCGATTCCTGGCAGCTCGGTCCTCCTCTCCCTGCTGATTTCAGATCCGGCAATTCCTCCCAGTCCTTGTCATCCGCCCTCTTCAAAGGGAGGTTCTACGTCTTCGGCATCTATTCGTGCTTCATTTCATCTTTTGACCTACACACCAATGCCTGGAGCCAAGTCCAGACTCTCCGGCCGCCTGGAGTTGTCTTCTCTTTCTTGGTTGGCTGCCGGGACAGGCTTGTTCTGGCCGGAATCTGCAACGGGCCTCTCGGATCCTCCTTTAATCTGTGGAGGATCGAGGAGGCCACCATGGAGTTCAGTGAGATTGCAATCATGCCTCACGACTTGCTGTGTAGCTTGTTTGAGGGGGATGAGGAGGATAAGTTTGCGAGCTTGAAATGTGTGGGCTTGGGAAATCTTATATACGTCTTTAATGAAGAGTACCATAAGAAGTACCCGGCTTGTGTTTGCGAGATTAGCAGTGAGACTCGGCAGTGTAGCTGGAGGAGAGTGCCTCCCTTGCCTTCACCCGTGAATAAGTTTCACCAAGTTATAAGCTTTTGTTCCACGGTTTCGCTCAATAGTATTCTTCAGCCTGAGGAGGAAGAGGGACACGTTGGTCCCATGCAGCCTATGGTTGACTGA

Protein Analysis

388

Amino Acids

43.54

Weight (kDa)

5.88

Isoelectric Point (pI)

60.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 2.5e-08 F-box domain
F-box-like PF12937 10 - 41 6.1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AasI GACNNNNNNGTC 1 cut(s) 1140
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 2 cut(s) 246, 690
AccI GTMKAC 1 cut(s) 495
AciI CCGC 9 cut(s) 132, 244, 253, 333, 403, 468, 508, 612, 716
AclWI GGATC 5 cut(s) 37, 576, 789, 802, 824
AcoI YGGCCR 3 cut(s) 513, 713, 768
AcuI CTGAAG 1 cut(s) 1097
AcyI GRCGYC 2 cut(s) 309, 423
AfaI GTAC 2 cut(s) 965, 977
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 5 cut(s) 168, 246, 419, 546, 690
AflIII ACRYGT 1 cut(s) 1135
AgsI TTSAA 2 cut(s) 622, 919
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 4 cut(s) 167, 545, 689, 718
AloI GAACNNNNNNTCC 4 cut(s) 8, 40, 200, 232
AluBI AGCT 8 cut(s) 24, 40, 97, 553, 879, 915, 1023, 1080
AluI AGCT 8 cut(s) 24, 40, 97, 553, 879, 915, 1023, 1080
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 1001
AlwI GGATC 5 cut(s) 37, 576, 789, 802, 824
Aor51HI AGCGCT 1 cut(s) 368
AoxI GGCC 5 cut(s) 513, 713, 768, 785, 825
ApeKI GCWGC 3 cut(s) 550, 747, 1150
AspLEI GCGC 3 cut(s) 311, 369, 378
AspS9I GGNCC 4 cut(s) 505, 557, 785, 1142
AsuC2I CCSGG 2 cut(s) 752, 980
AsuHPI GGTGA 4 cut(s) 322, 337, 1041, 1058
AvaII GGWCC 3 cut(s) 505, 557, 1142
AxyI CCTNAGG 1 cut(s) 1119
BamHI GGATCC 1 cut(s) 794
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 26
BbsI GAAGAC 3 cut(s) 418, 631, 721
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 562, 734, 1162
BccI CCATC 2 cut(s) 68, 116
BceAI ACGGC 3 cut(s) 199, 331, 500
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 4 cut(s) 169, 547, 691, 720
BcnI CCSGG 2 cut(s) 752, 980
BcoDI GTCTC 1 cut(s) 1001
BfoI RGCGCY 3 cut(s) 312, 370, 379
BglII AGATCT 1 cut(s) 522
BisI GCNGC 4 cut(s) 551, 716, 748, 1151
BlsI GCNGC 4 cut(s) 552, 717, 749, 1152
Bme1390I CCNGG 6 cut(s) 169, 547, 691, 720, 752, 980
Bme18I GGWCC 3 cut(s) 505, 557, 1142
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 505, 557, 785, 1142
BmiI GGNNCC 5 cut(s) 251, 310, 695, 796, 1144
BmrFI CCNGG 6 cut(s) 169, 547, 691, 720, 752, 980
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 3 cut(s) 195, 414, 654
BmuI ACTGGG 1 cut(s) 592
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 3 cut(s) 418, 631, 721
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
BpmI CTGGAG 4 cut(s) 337, 712, 741, 1045
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 752, 980
BsaBI GATNNNNATC 1 cut(s) 851
BsaHI GRCGYC 2 cut(s) 309, 423
BsaJI CCNNGG 4 cut(s) 167, 304, 831, 1089
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 246, 419, 546, 690
Bse1I ACTGG 2 cut(s) 214, 598
Bse21I CCTNAGG 1 cut(s) 1119
Bse8I GATNNNNATC 1 cut(s) 851
BseBI CCWGG 4 cut(s) 169, 547, 691, 720
BseDI CCNNGG 4 cut(s) 167, 304, 831, 1089
BseGI GGATG 4 cut(s) 60, 186, 608, 898
BseJI GATNNNNATC 1 cut(s) 851
BseLI CCNNNNNNNGG 5 cut(s) 168, 246, 419, 546, 690
BseMII CTCAG 2 cut(s) 11, 1110
BseNI ACTGG 2 cut(s) 214, 598
BseRI GAGGAG 8 cut(s) 106, 190, 434, 552, 836, 911, 1042, 1136
BseX3I CGGCCG 1 cut(s) 713
BseXI GCAGC 3 cut(s) 562, 734, 1162
Bsh1285I CGRYCG 1 cut(s) 716
BshFI GGCC 5 cut(s) 515, 715, 770, 787, 827
BshNI GGYRCC 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 6 cut(s) 435, 585, 712, 751, 771, 980
BslFI GGGAC 3 cut(s) 767, 1128, 1146
BslI CCNNNNNNNGG 5 cut(s) 168, 246, 419, 546, 690
BsmAI GTCTC 1 cut(s) 1001
BsmFI GGGAC 3 cut(s) 767, 1128, 1146
BsnI GGCC 5 cut(s) 515, 715, 770, 787, 827
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 5 cut(s) 42, 522, 581, 794, 816
Bsp19I CCATGG 1 cut(s) 831
BspACI CCGC 9 cut(s) 132, 244, 253, 333, 403, 468, 508, 612, 716
BspANI GGCC 5 cut(s) 515, 715, 770, 787, 827
BspCNI CTCAG 2 cut(s) 12, 1111
BspLI GGNNCC 5 cut(s) 251, 310, 695, 796, 1144
BspPI GGATC 5 cut(s) 37, 576, 789, 802, 824
BspT107I GGYRCC 1 cut(s) 308
BsrI ACTGG 2 cut(s) 214, 598
BssECI CCNNGG 4 cut(s) 167, 304, 831, 1089
BssMI GATC 5 cut(s) 42, 522, 581, 794, 816
BssNI GRCGYC 2 cut(s) 309, 423
BssT1I CCWWGG 1 cut(s) 831
Bst2UI CCWGG 4 cut(s) 169, 547, 691, 720
Bst4CI ACNGT 2 cut(s) 88, 1093
Bst6I CTCTTC 4 cut(s) 420, 623, 954, 1122
BstACI GRCGYC 2 cut(s) 309, 423
BstC8I GCNNGC 3 cut(s) 95, 248, 913
BstDEI CTNAG 2 cut(s) 20, 1119
BstDSI CCRYGG 2 cut(s) 831, 1089
BstF5I GGATG 4 cut(s) 60, 186, 608, 898
BstH2I RGCGCY 3 cut(s) 312, 370, 379
BstHHI GCGC 3 cut(s) 311, 369, 378
BstKTI GATC 5 cut(s) 45, 525, 584, 797, 819
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 5 cut(s) 42, 522, 581, 794, 816
BstMCI CGRYCG 1 cut(s) 716
BstMWI GCNNNNNNNGC 7 cut(s) 252, 306, 315, 373, 375, 999, 1042
BstNI CCWGG 4 cut(s) 169, 547, 691, 720
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 6 cut(s) 167, 545, 689, 718, 750, 978
BstV1I GCAGC 3 cut(s) 562, 734, 1162
BstV2I GAAGAC 3 cut(s) 418, 631, 721
BstX2I RGATCY 3 cut(s) 522, 581, 794
BstYI RGATCY 3 cut(s) 522, 581, 794
BstZI CGGCCG 1 cut(s) 713
Bsu36I CCTNAGG 1 cut(s) 1119
BsuRI GGCC 5 cut(s) 515, 715, 770, 787, 827
BtgI CCRYGG 2 cut(s) 831, 1089
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 4 cut(s) 60, 186, 608, 898
BtsI GCAGTG 2 cut(s) 1009, 1022
BtsIMutI CAGTG 3 cut(s) 847, 1009, 1022
Cac8I GCNNGC 3 cut(s) 95, 248, 913
CfoI GCGC 3 cut(s) 311, 369, 378
Cfr13I GGNCC 4 cut(s) 505, 557, 785, 1142
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 964, 976
CviAII CATG 3 cut(s) 832, 856, 1147
CviQI GTAC 2 cut(s) 964, 976
DdeI CTNAG 2 cut(s) 20, 1119
DinI GGCGCC 1 cut(s) 310
DpnI GATC 5 cut(s) 44, 524, 583, 796, 818
DpnII GATC 5 cut(s) 42, 522, 581, 794, 816
DrdI GACNNNNNNGTC 1 cut(s) 1140
DseDI GACNNNNNNGTC 1 cut(s) 1140
EaeI YGGCCR 3 cut(s) 513, 713, 768
EagI CGGCCG 1 cut(s) 713
Eam1104I CTCTTC 4 cut(s) 420, 623, 954, 1122
EarI CTCTTC 4 cut(s) 420, 623, 954, 1122
EciI GGCGGA 3 cut(s) 121, 242, 601
Ecl136II GAGCTC 1 cut(s) 24
EclXI CGGCCG 1 cut(s) 713
Eco130I CCWWGG 1 cut(s) 831
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 3 cut(s) 505, 557, 1142
Eco47III AGCGCT 1 cut(s) 368
Eco52I CGGCCG 1 cut(s) 713
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 1097
Eco81I CCTNAGG 1 cut(s) 1119
EcoICRI GAGCTC 1 cut(s) 24
EcoRII CCWGG 4 cut(s) 167, 545, 689, 718
EcoT14I CCWWGG 1 cut(s) 831
EcoT38I GRGCYC 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 831
FaeI CATG 3 cut(s) 835, 859, 1150
FaiI YATR 8 cut(s) 833, 857, 944, 946, 969, 1076, 1148, 1157
FaqI GGGAC 3 cut(s) 767, 1128, 1146
FatI CATG 3 cut(s) 831, 855, 1146
FauI CCCGC 1 cut(s) 410
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 4 cut(s) 551, 716, 748, 1151
FokI GGATG 4 cut(s) 47, 173, 595, 905
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 4 cut(s) 551, 716, 748, 1151
GlaI GCGC 3 cut(s) 310, 368, 377
GluI GCNGC 4 cut(s) 551, 716, 748, 1151
GsuI CTGGAG 4 cut(s) 337, 712, 741, 1045
HaeII RGCGCY 3 cut(s) 312, 370, 379
HaeIII GGCC 5 cut(s) 515, 715, 770, 787, 827
HapII CCGG 6 cut(s) 435, 585, 712, 751, 771, 980
HgaI GACGC 1 cut(s) 412
HhaI GCGC 3 cut(s) 311, 369, 378
Hin1I GRCGYC 2 cut(s) 309, 423
Hin1II CATG 3 cut(s) 835, 859, 1150
Hin6I GCGC 3 cut(s) 309, 367, 376
HinP1I GCGC 3 cut(s) 309, 367, 376
HincII GTYRAC 2 cut(s) 496, 1162
HindII GTYRAC 2 cut(s) 496, 1162
HindIII AAGCTT 1 cut(s) 1078
HinfI GANTC 8 cut(s) 357, 431, 477, 536, 542, 706, 774, 1009
HpaII CCGG 6 cut(s) 435, 585, 712, 751, 771, 980
HphI GGTGA 4 cut(s) 322, 337, 1041, 1058
Hpy166II GTNNAC 2 cut(s) 496, 1162
Hpy188I TCNGA 6 cut(s) 28, 77, 476, 541, 581, 794
Hpy188III TCNNGA 6 cut(s) 13, 64, 354, 520, 703, 863
Hpy8I GTNNAC 2 cut(s) 496, 1162
Hpy99I CGWCG 5 cut(s) 32, 317, 464, 467, 521
HpyAV CCTTC 5 cut(s) 136, 229, 235, 280, 1056
HpyCH4III ACNGT 2 cut(s) 88, 1093
HpyCH4IV ACGT 4 cut(s) 30, 636, 948, 1137
HpyCH4V TGCA 4 cut(s) 93, 780, 851, 1150
HpyF10VI GCNNNNNNNGC 7 cut(s) 252, 306, 315, 373, 375, 999, 1042
HpyF3I CTNAG 2 cut(s) 20, 1119
HpySE526I ACGT 4 cut(s) 30, 636, 948, 1137
Hsp92I GRCGYC 2 cut(s) 309, 423
Hsp92II CATG 3 cut(s) 835, 859, 1150
HspAI GCGC 3 cut(s) 309, 367, 376
KasI GGCGCC 1 cut(s) 308
Kzo9I GATC 5 cut(s) 42, 522, 581, 794, 816
LmnI GCTCC 5 cut(s) 29, 37, 255, 383, 693
Lsp1109I GCAGC 3 cut(s) 562, 734, 1162
LweI GCATC 3 cut(s) 195, 414, 654
MaeII ACGT 4 cut(s) 30, 636, 948, 1137
MaeIII GTNAC 1 cut(s) 31
MalI GATC 5 cut(s) 44, 524, 583, 796, 818
MboI GATC 5 cut(s) 42, 522, 581, 794, 816
MflI RGATCY 3 cut(s) 522, 581, 794
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 1 cut(s) 589
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 4 cut(s) 425, 530, 700, 1003
MmeI TCCRAC 2 cut(s) 51, 264
MseI TTAA 2 cut(s) 804, 954
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 6 cut(s) 435, 585, 712, 751, 771, 980
MspR9I CCNGG 6 cut(s) 169, 547, 691, 720, 752, 980
MvaI CCWGG 4 cut(s) 169, 547, 691, 720
MwoI GCNNNNNNNGC 7 cut(s) 252, 306, 315, 373, 375, 999, 1042
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 2 cut(s) 752, 980
NcoI CCATGG 1 cut(s) 831
NdeII GATC 5 cut(s) 42, 522, 581, 794, 816
NlaIII CATG 3 cut(s) 835, 859, 1150
NlaIV GGNNCC 5 cut(s) 251, 310, 695, 796, 1144
NmeAIII GCCGAG 3 cut(s) 285, 399, 991
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 426
PfeI GAWTC 4 cut(s) 357, 477, 542, 774
PflMI CCANNNNNTGG 2 cut(s) 246, 690
PkrI GCNGC 4 cut(s) 552, 717, 749, 1152
PleI GAGTC 4 cut(s) 425, 530, 700, 1003
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 4 cut(s) 425, 530, 700, 1003
PshAI GACNNNNGTC 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 4 cut(s) 167, 545, 689, 718
PspGI CCWGG 4 cut(s) 167, 545, 689, 718
PspN4I GGNNCC 5 cut(s) 251, 310, 695, 796, 1144
PspPI GGNCC 4 cut(s) 505, 557, 785, 1142
PsuI RGATCY 3 cut(s) 522, 581, 794
RsaI GTAC 2 cut(s) 965, 977
RsaNI GTAC 2 cut(s) 964, 976
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 494
SaqAI TTAA 2 cut(s) 804, 954
SatI GCNGC 4 cut(s) 551, 716, 748, 1151
Sau3AI GATC 5 cut(s) 42, 522, 581, 794, 816
Sau96I GGNCC 4 cut(s) 505, 557, 785, 1142
SchI GAGTC 4 cut(s) 425, 530, 700, 1003
ScrFI CCNGG 6 cut(s) 169, 547, 691, 720, 752, 980
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 3 cut(s) 195, 414, 654
SfoI GGCGCC 1 cut(s) 310
SinI GGWCC 3 cut(s) 505, 557, 1142
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 589
SsiI CCGC 9 cut(s) 132, 244, 253, 333, 403, 468, 508, 612, 716
SspDI GGCGCC 1 cut(s) 308
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 6 cut(s) 167, 545, 689, 718, 750, 978
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 2 cut(s) 88, 1093
TaiI ACGT 4 cut(s) 33, 639, 951, 1140
TaqI TCGA 6 cut(s) 228, 429, 495, 501, 519, 819
TaqII GACCGA 1 cut(s) 545
TasI AATT 1 cut(s) 589
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 4 cut(s) 357, 477, 542, 774
Tru1I TTAA 2 cut(s) 804, 954
Tru9I TTAA 2 cut(s) 804, 954
TscAI CASTG 3 cut(s) 847, 1009, 1022
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 550, 747, 1150
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 5 cut(s) 445, 469, 649, 654, 972
TspGWI ACGGA 2 cut(s) 20, 50
TspRI CASTG 3 cut(s) 847, 1009, 1022
Van91I CCANNNNNTGG 2 cut(s) 246, 690
VpaK11BI GGWCC 3 cut(s) 505, 557, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XmiI GTMKAC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.