Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Forward (+)

9182616 .. 9184679

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATGAGCTCTGCATCCGCCATGAAAGCTGTTGGATTTTTGCTTCTGCTTACCATTCTAACATTAGCTTATGCGAAGAAGTCAGGTGATGTGACAGAGTTGCAGATTGGTGTTAAGTACAAGCCTCAGAAATGTGATCTCCAGGCTCACAAAGGGGATAAGATCAAGGTTCACTATCGGGGAAAGTTAACTGATGGAACTGTCTTTGATTCAAGTTTTGAGAGAGGTGACCCTATTGAGTTTGAGCTTGGAACTGGTCAAGTCATCCCAGGATGGGACCAGGGTTTATTGGGAGCTTGTGTAGGTGAGAAGAGAAAGTTGAAAATCCCATCCAAGCTTGGTTATGGTGATAACGGCTCACCACCAAAAATCCCGGGTGGGGCGACACTGATATTCGACACCGAGCTTGTTGCTGTGAACGGAGAACCATCCAGCGAAGCGAAATCAAAGAATGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

153

Amino Acids

16.35

Weight (kDa)

8.46

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	46 - 137	4.9e-37	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	274, 379
AgsI	TTSAA	2 cut(s)	213, 322
AjnI	CCWGG	3 cut(s)	141, 268, 279
AluBI	AGCT	8 cut(s)	9, 29, 68, 247, 296, 337, 406, 457
AluI	AGCT	8 cut(s)	9, 29, 68, 247, 296, 337, 406, 457
Alw21I	GWGCWC	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	2 cut(s)	374, 375
AsuHPI	GGTGA	5 cut(s)	98, 239, 317, 351, 359
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	4 cut(s)	188, 267, 337, 436
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	3 cut(s)	143, 270, 281
BcnI	CCSGG	2 cut(s)	374, 375
Bme1390I	CCNGG	5 cut(s)	143, 270, 281, 374, 375
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	5 cut(s)	143, 270, 281, 374, 375
BmsI	GCATC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	374, 375
BsaJI	CCNNGG	3 cut(s)	268, 280, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 379
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	3 cut(s)	143, 270, 281
BseDI	CCNNGG	3 cut(s)	268, 280, 373
BseGI	GGATG	5 cut(s)	14, 264, 278, 329, 428
BseLI	CCNNNNNNNGG	2 cut(s)	274, 379
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	274, 379
BsmFI	GGGAC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	136, 162
BspACI	CCGC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	268, 280, 373
BssMI	GATC	2 cut(s)	136, 162
Bst2UI	CCWGG	3 cut(s)	143, 270, 281
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	5 cut(s)	14, 264, 278, 329, 428
BstKTI	GATC	2 cut(s)	139, 165
BstMBI	GATC	2 cut(s)	136, 162
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	3 cut(s)	143, 270, 281
BstPI	GGTNACC	1 cut(s)	227
BstSCI	CCNGG	5 cut(s)	141, 268, 279, 372, 373
BtsCI	GGATG	5 cut(s)	14, 264, 278, 329, 428
BtsIMutI	CAGTG	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	277
Cfr9I	CCCGGG	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	22
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	138, 164
DpnII	GATC	2 cut(s)	136, 162
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	9
EcoO65I	GGTNACC	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	141, 268, 279
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	1 cut(s)	25
FaiI	YATR	3 cut(s)	23, 72, 345
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	21
FokI	GGATG	4 cut(s)	251, 285, 316, 415
FriOI	GRGCYC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	125
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	209
HpaI	GTTAAC	1 cut(s)	189
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	5 cut(s)	98, 239, 317, 351, 359
Hpy166II	GTNNAC	3 cut(s)	172, 189, 418
Hpy188I	TCNGA	1 cut(s)	129
Hpy8I	GTNNAC	3 cut(s)	172, 189, 418
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	14, 103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	136, 162
LmnI	GCTCC	1 cut(s)	293
LweI	GCATC	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	91, 227
MalI	GATC	2 cut(s)	138, 164
MboI	GATC	2 cut(s)	136, 162
MboII	GAAGA	2 cut(s)	88, 322
MhlI	GDGCHC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	135, 218
MseI	TTAA	2 cut(s)	114, 188
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	5 cut(s)	143, 270, 281, 374, 375
MvaI	CCWGG	3 cut(s)	143, 270, 281
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	2 cut(s)	374, 375
NdeII	GATC	2 cut(s)	136, 162
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	91, 227
PfeI	GAWTC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	3 cut(s)	141, 268, 279
PspEI	GGTNACC	1 cut(s)	227
PspGI	CCWGG	3 cut(s)	141, 268, 279
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	114, 188
Sau3AI	GATC	2 cut(s)	136, 162
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	5 cut(s)	143, 270, 281, 374, 375
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	277
SmaI	CCCGGG	1 cut(s)	375
SsiI	CCGC	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	5 cut(s)	141, 268, 279, 372, 373
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	396
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	114, 188
Tru9I	TTAA	2 cut(s)	114, 188
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	2 cut(s)	91, 227
Tsp45I	GTSAC	2 cut(s)	91, 227
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	435
TspMI	CCCGGG	1 cut(s)	373
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	277
XmaI	CCCGGG	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.